Wall clock time and date at job start Tue Mar 31 2020 15:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.44024 * 2 1 4 4 C 1.54892 * 110.59578 * 122.62070 * 2 1 3 5 5 C 1.55016 * 102.75102 * 156.68817 * 4 2 1 6 6 C 1.54264 * 104.13672 * 322.04097 * 5 4 2 7 7 C 1.53002 * 110.03021 * 142.93345 * 6 5 4 8 8 C 1.50698 * 110.03661 * 264.31905 * 6 5 4 9 9 O 1.21281 * 120.00233 * 105.26706 * 8 6 5 10 10 N 1.34779 * 120.00114 * 285.26734 * 8 6 5 11 11 C 1.48205 * 119.97181 * 173.47474 * 10 8 6 12 12 C 1.47148 * 110.34273 * 102.48876 * 11 10 8 13 13 C 1.53796 * 111.83942 * 58.29382 * 12 11 10 14 14 N 1.43459 * 107.96674 * 281.67522 * 13 12 11 15 15 C 1.36937 * 118.94172 * 273.63471 * 14 13 12 16 16 H 1.08006 * 120.00287 * 33.52715 * 15 14 13 17 17 C 1.38809 * 120.00148 * 213.53407 * 15 14 13 18 18 N 1.31623 * 119.99853 * 6.09558 * 17 15 14 19 19 Si 1.86806 * 120.00104 * 186.09239 * 17 15 14 20 20 H 1.48500 * 109.46773 * 90.00117 * 19 17 15 21 21 H 1.48503 * 109.47193 * 209.99943 * 19 17 15 22 22 H 1.48495 * 109.47125 * 329.99991 * 19 17 15 23 23 C 1.48701 * 122.18127 * 93.53414 * 14 13 12 24 24 C 1.43622 * 119.96759 * 353.45640 * 10 8 6 25 25 C 1.53876 * 106.64006 * 23.62886 * 6 5 4 26 26 C 1.52997 * 110.03200 * 119.25503 * 25 6 5 27 27 C 1.52991 * 110.03503 * 240.68739 * 25 6 5 28 28 H 1.08991 * 109.47344 * 182.54163 * 1 2 3 29 29 H 1.09007 * 109.46942 * 302.54208 * 1 2 3 30 30 H 1.08998 * 109.46806 * 62.53685 * 1 2 3 31 31 H 1.08997 * 110.75381 * 274.98514 * 4 2 1 32 32 H 1.08992 * 110.75833 * 38.17267 * 4 2 1 33 33 H 1.09012 * 110.51812 * 203.38259 * 5 4 2 34 34 H 1.09000 * 110.50821 * 80.70504 * 5 4 2 35 35 H 1.09000 * 109.47141 * 165.59026 * 7 6 5 36 36 H 1.09000 * 109.47324 * 285.59384 * 7 6 5 37 37 H 1.09004 * 109.46942 * 45.59794 * 7 6 5 38 38 H 1.09003 * 109.32859 * 222.75299 * 11 10 8 39 39 H 1.08994 * 109.32852 * 342.39631 * 11 10 8 40 40 H 1.09000 * 109.00470 * 178.90248 * 12 11 10 41 41 H 1.08995 * 109.00523 * 297.76825 * 12 11 10 42 42 H 1.09007 * 109.76276 * 41.29451 * 13 12 11 43 43 H 1.08998 * 109.76256 * 162.00647 * 13 12 11 44 44 H 0.96998 * 119.99424 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.53447 * 200.75087 * 23 14 13 46 46 H 1.08997 * 109.36977 * 80.75261 * 23 14 13 47 47 H 1.08998 * 108.87984 * 31.45068 * 24 10 8 48 48 H 1.09001 * 108.87265 * 149.98880 * 24 10 8 49 49 H 1.09001 * 109.47168 * 60.00344 * 26 25 6 50 50 H 1.09001 * 109.47506 * 180.02562 * 26 25 6 51 51 H 1.09008 * 109.47386 * 299.99960 * 26 25 6 52 52 H 1.09008 * 109.47130 * 63.45229 * 27 25 6 53 53 H 1.09000 * 109.47704 * 183.44842 * 27 25 6 54 54 H 1.09002 * 109.47129 * 303.45422 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0749 -0.7816 1.2212 5 6 3.4950 -1.1949 0.7570 6 6 3.3184 -1.5371 -0.7368 7 6 4.5464 -1.0813 -1.5275 8 6 3.1172 -3.0209 -0.9063 9 8 2.0145 -3.4584 -1.1587 10 7 4.1625 -3.8618 -0.7775 11 6 3.9412 -5.3271 -0.8002 12 6 4.3194 -5.8814 -2.1097 13 6 5.7897 -5.5878 -2.4523 14 7 5.8767 -4.2276 -2.8998 15 6 5.6514 -3.9492 -4.2215 16 1 4.9347 -4.5316 -4.7816 17 6 6.3441 -2.9184 -4.8416 18 7 7.3020 -2.2875 -4.1959 19 14 5.9170 -2.4268 -6.5925 20 1 4.8688 -1.3751 -6.5695 21 1 7.1302 -1.9017 -7.2691 22 1 5.4127 -3.6125 -7.3305 23 6 6.2014 -3.1089 -1.9755 24 6 5.4900 -3.3371 -0.6189 25 6 2.0699 -0.7774 -1.2182 26 6 2.4476 0.1966 -2.3360 27 6 1.0150 -1.7663 -1.7183 28 1 -0.3633 -1.0266 0.0456 29 1 -0.3633 0.5528 0.8664 30 1 -0.3633 0.4739 -0.9119 31 1 2.1278 -0.1381 2.0993 32 1 1.4608 -1.6590 1.4236 33 1 3.8386 -2.0689 1.3106 34 1 4.1928 -0.3664 0.8789 35 1 4.5353 -1.5438 -2.5145 36 1 4.5279 0.0033 -1.6343 37 1 5.4511 -1.3789 -0.9971 38 1 4.5448 -5.7952 -0.0225 39 1 2.8878 -5.5357 -0.6136 40 1 4.1667 -6.9605 -2.0959 41 1 3.6827 -5.4428 -2.8780 42 1 6.4090 -5.7245 -1.5658 43 1 6.1250 -6.2589 -3.2430 44 1 7.7858 -1.5670 -4.6291 45 1 5.8634 -2.1678 -2.4094 46 1 7.2794 -3.0708 -1.8188 47 1 5.4327 -2.3876 -0.0867 48 1 6.0777 -4.0381 -0.0261 49 1 2.8743 -0.3576 -3.1720 50 1 1.5573 0.7297 -2.6697 51 1 3.1803 0.9120 -1.9624 52 1 0.6899 -2.3993 -0.8925 53 1 0.1604 -1.2172 -2.1133 54 1 1.4432 -2.3873 -2.5052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982088772.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:47 Heat of formation + Delta-G solvation = 39.866442 kcal Electronic energy + Delta-G solvation = -31974.937215 eV Core-core repulsion = 28335.530460 eV Total energy + Delta-G solvation = -3639.406755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.59849 -39.77988 -38.31672 -36.16780 -35.24583 -33.36691 -32.98885 -32.49896 -29.62666 -28.77306 -28.36884 -27.24394 -25.47345 -24.79334 -24.53135 -23.72471 -21.71639 -21.48578 -20.05156 -19.15530 -18.27479 -17.51102 -17.32705 -16.85703 -16.72681 -16.07114 -15.82067 -15.48379 -15.30663 -14.95989 -14.71452 -14.54719 -14.45361 -14.21014 -14.08905 -13.96823 -13.86251 -13.40353 -13.20564 -13.13689 -12.88622 -12.71854 -12.61692 -12.52099 -12.34676 -12.24540 -12.06004 -11.92965 -11.83212 -11.62376 -11.59039 -11.44522 -11.34010 -11.27239 -11.10007 -11.05957 -10.85757 -10.44967 -9.49939 -9.30752 -8.47767 -7.83268 -5.35814 1.38744 1.41674 1.48228 1.79843 2.29671 2.48722 3.29419 3.44751 3.59367 3.65824 3.78588 4.00021 4.17551 4.23477 4.26821 4.32022 4.36614 4.42391 4.45165 4.51639 4.53695 4.58221 4.64104 4.70611 4.73818 4.77978 4.83500 4.87909 4.91153 4.94532 4.98024 5.03306 5.06711 5.10849 5.16494 5.17807 5.25232 5.28313 5.30355 5.33324 5.39937 5.44070 5.46159 5.51994 5.56461 5.62613 5.65474 5.78999 5.87204 5.97400 6.47287 6.72011 7.23691 7.44747 7.99718 8.39564 9.18914 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.005949 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.452673 B = 4705.461769 C = 5597.699285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.089 0.911 4 C -0.112 4.112 5 C -0.106 4.106 6 C -0.069 4.069 7 C -0.161 4.161 8 C 0.514 3.486 9 O -0.566 6.566 10 N -0.586 5.586 11 C 0.128 3.872 12 C -0.153 4.153 13 C 0.160 3.840 14 N -0.600 5.600 15 C -0.260 4.260 16 H 0.038 0.962 17 C -0.026 4.026 18 N -0.921 5.921 19 Si 0.943 3.057 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.280 1.280 23 C 0.135 3.865 24 C 0.076 3.924 25 C -0.049 4.049 26 C -0.137 4.137 27 C -0.095 4.095 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.022 0.978 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.251 0.749 45 H 0.091 0.909 46 H 0.012 0.988 47 H 0.107 0.893 48 H 0.074 0.926 49 H 0.026 0.974 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.074 0.926 53 H 0.021 0.979 54 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.322 4.439 14.233 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.072 4.072 7 C -0.217 4.217 8 C 0.305 3.695 9 O -0.447 6.447 10 N -0.316 5.316 11 C 0.006 3.994 12 C -0.194 4.194 13 C 0.032 3.968 14 N -0.323 5.323 15 C -0.391 4.391 16 H 0.056 0.944 17 C -0.223 4.223 18 N -0.566 5.566 19 Si 0.773 3.227 20 H -0.217 1.217 21 H -0.213 1.213 22 H -0.206 1.206 23 C 0.011 3.989 24 C -0.049 4.049 25 C -0.049 4.049 26 C -0.194 4.194 27 C -0.152 4.152 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.030 0.970 47 H 0.125 0.875 48 H 0.092 0.908 49 H 0.045 0.955 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.093 0.907 53 H 0.039 0.961 54 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.742 4.296 14.068 16.623 hybrid contribution 0.114 -0.234 -2.032 2.049 sum -7.628 4.062 12.036 14.817 Atomic orbital electron populations 1.21819 0.94648 1.01569 1.01696 1.22016 0.95940 0.98984 0.92807 0.89259 1.22536 0.94810 0.99717 0.97882 1.22494 0.98933 1.02196 0.90740 1.21356 0.97119 0.90060 0.98704 1.23131 0.96790 1.02304 0.99443 1.21170 0.83510 0.89969 0.74900 1.90791 1.24703 1.79467 1.49728 1.47605 1.06909 1.06368 1.70712 1.20584 1.01592 0.79673 0.97508 1.21665 0.99949 1.00240 0.97500 1.20406 0.93229 0.86016 0.97139 1.43693 1.82065 1.01664 1.04847 1.19134 1.16088 1.15872 0.87976 0.94399 1.25618 0.96163 1.00555 0.99950 1.70057 1.23915 1.25278 1.37383 0.85649 0.76903 0.77938 0.82249 1.21651 1.21262 1.20593 1.22743 0.95209 0.93105 0.87867 1.22460 0.83122 1.00744 0.98576 1.21140 0.93106 0.94714 0.95970 1.22026 1.01315 0.98648 0.97428 1.22147 0.96459 0.95593 1.00970 0.93380 0.91359 0.93016 0.88953 0.92734 0.91267 0.88397 0.94288 0.90459 0.89236 0.89054 0.91200 0.90238 0.95882 0.92891 0.95159 0.93987 0.89098 0.96963 0.87537 0.90759 0.95499 0.92160 0.90662 0.90747 0.96084 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.04 71.98 0.58 -2.28 16 2 C -0.08 -1.71 2.90 -9.72 -0.03 -1.74 16 3 H 0.09 1.67 7.84 -2.39 -0.02 1.65 16 4 C -0.11 -2.25 6.34 31.93 0.20 -2.05 16 5 C -0.11 -2.36 4.87 31.71 0.15 -2.20 16 6 C -0.07 -2.08 0.61 -52.20 -0.03 -2.11 16 7 C -0.16 -5.32 4.84 71.98 0.35 -4.98 16 8 C 0.51 18.72 6.05 87.66 0.53 19.25 16 9 O -0.57 -23.39 10.17 -3.03 -0.03 -23.42 16 10 N -0.59 -20.33 2.46 -831.22 -2.04 -22.37 16 11 C 0.13 4.16 5.66 84.23 0.48 4.63 16 12 C -0.15 -5.61 5.64 29.04 0.16 -5.45 16 13 C 0.16 6.55 5.63 87.21 0.49 7.04 16 14 N -0.60 -29.16 2.51 -698.48 -1.75 -30.91 16 15 C -0.26 -14.41 9.19 84.03 0.77 -13.64 16 16 H 0.04 2.22 7.84 -2.91 -0.02 2.19 16 17 C -0.03 -1.44 5.11 84.86 0.43 -1.01 16 18 N -0.92 -51.60 11.01 21.65 0.24 -51.36 16 19 Si 0.94 45.66 29.56 68.60 2.03 47.69 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 23 C 0.14 5.93 4.06 86.59 0.35 6.28 16 24 C 0.08 2.50 4.59 87.55 0.40 2.90 16 25 C -0.05 -1.41 0.86 -51.46 -0.04 -1.46 16 26 C -0.14 -3.99 7.12 71.98 0.51 -3.48 16 27 C -0.10 -3.29 5.40 71.98 0.39 -2.90 16 28 H 0.05 1.11 6.49 -2.39 -0.02 1.10 16 29 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.06 7.73 -2.39 -0.02 1.04 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.25 8.04 -2.39 -0.02 1.23 16 33 H 0.07 1.53 7.40 -2.38 -0.02 1.51 16 34 H 0.10 1.79 7.86 -2.39 -0.02 1.77 16 35 H 0.04 1.70 5.78 -2.39 -0.01 1.69 16 36 H 0.08 2.26 5.63 -2.39 -0.01 2.25 16 37 H 0.09 2.84 3.67 -2.38 -0.01 2.83 16 38 H 0.09 2.38 8.06 -2.39 -0.02 2.36 16 39 H 0.07 2.34 7.20 -2.39 -0.02 2.32 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.02 1.03 7.90 -2.39 -0.02 1.01 16 42 H 0.05 1.93 7.58 -2.38 -0.02 1.92 16 43 H 0.03 1.30 8.02 -2.39 -0.02 1.28 16 44 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.09 4.28 2.65 -2.38 -0.01 4.27 16 46 H 0.01 0.59 7.90 -2.39 -0.02 0.57 16 47 H 0.11 3.00 3.58 -2.39 -0.01 2.99 16 48 H 0.07 2.17 7.72 -2.39 -0.02 2.15 16 49 H 0.03 0.95 7.24 -2.39 -0.02 0.93 16 50 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.07 1.89 6.42 -2.38 -0.02 1.88 16 52 H 0.07 2.69 5.34 -28.03 -0.15 2.54 16 53 H 0.02 0.66 7.06 -2.39 -0.02 0.64 16 54 H 0.02 0.72 6.45 -2.44 -0.02 0.71 16 Total: -1.00 -65.29 366.22 4.89 -60.40 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.75 Total: 23.16 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.70 Total: -3.19 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -3.56 Total: -104.64 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.03 Total: -23.42 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -65.29 4.89 -60.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982088772.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.265 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds