Wall clock time and date at job start Tue Mar 31 2020 15:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47122 * 2 1 4 4 C 1.53003 * 109.46879 * 240.00565 * 2 1 3 5 5 C 1.53006 * 109.46866 * 179.97438 * 4 2 1 6 6 C 1.50704 * 109.46761 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00222 * 335.52221 * 6 5 4 8 8 N 1.34776 * 119.99892 * 155.53021 * 6 5 4 9 9 C 1.46925 * 120.63241 * 175.48318 * 8 6 5 10 10 C 1.53191 * 108.77646 * 233.63128 * 9 8 6 11 11 C 1.53037 * 109.30771 * 305.35840 * 10 9 8 12 12 N 1.46505 * 109.45736 * 181.38453 * 11 10 9 13 13 C 1.46494 * 120.00127 * 299.97835 * 12 11 10 14 14 C 1.36937 * 119.99704 * 119.97456 * 12 11 10 15 15 H 1.08008 * 120.00151 * 334.74295 * 14 12 11 16 16 C 1.38815 * 120.00265 * 154.73823 * 14 12 11 17 17 N 1.31621 * 119.99353 * 4.27778 * 16 14 12 18 18 Si 1.86797 * 120.00379 * 184.28149 * 16 14 12 19 19 H 1.48497 * 109.47175 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47233 * 120.00200 * 18 16 14 21 21 H 1.48500 * 109.46957 * 240.00065 * 18 16 14 22 22 C 1.53041 * 109.52690 * 61.37952 * 11 10 9 23 23 C 1.46926 * 120.62917 * 355.50192 * 8 6 5 24 24 C 1.52999 * 109.47009 * 60.00183 * 5 4 2 25 25 C 1.52993 * 109.47091 * 299.99742 * 24 5 4 26 26 H 1.08998 * 109.47460 * 180.02562 * 25 24 5 27 27 C 1.52999 * 109.47137 * 300.00256 * 25 24 5 28 28 C 1.52994 * 109.47392 * 120.00487 * 2 1 3 29 29 H 1.09003 * 109.47628 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46979 * 299.99444 * 1 2 3 31 31 H 1.09001 * 109.47840 * 59.99330 * 1 2 3 32 32 H 1.08999 * 109.47065 * 60.00199 * 4 2 1 33 33 H 1.09000 * 109.47469 * 299.99815 * 4 2 1 34 34 H 1.08995 * 109.47142 * 299.99734 * 5 4 2 35 35 H 1.08998 * 109.58588 * 113.83564 * 9 8 6 36 36 H 1.09005 * 109.58205 * 353.41783 * 9 8 6 37 37 H 1.09006 * 109.49453 * 185.41557 * 10 9 8 38 38 H 1.08993 * 109.50181 * 65.31578 * 10 9 8 39 39 H 1.09004 * 109.46486 * 301.35986 * 11 10 9 40 40 H 1.09004 * 109.47352 * 264.61618 * 13 12 11 41 41 H 1.09003 * 109.46947 * 144.61971 * 13 12 11 42 42 H 1.08991 * 109.47398 * 24.62051 * 13 12 11 43 43 H 0.97005 * 119.99447 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.50263 * 58.57267 * 22 11 10 45 45 H 1.08994 * 109.49942 * 178.67547 * 22 11 10 46 46 H 1.08997 * 109.58741 * 246.15662 * 23 8 6 47 47 H 1.08994 * 109.58647 * 6.58489 * 23 8 6 48 48 H 1.09000 * 109.47183 * 60.00122 * 24 5 4 49 49 H 1.08998 * 109.46760 * 179.97438 * 24 5 4 50 50 H 1.09001 * 109.47147 * 180.02562 * 27 25 24 51 51 H 1.09007 * 109.47060 * 299.99968 * 27 25 24 52 52 H 1.08999 * 109.47447 * 59.99943 * 27 25 24 53 53 H 1.08998 * 109.47555 * 299.99725 * 28 2 1 54 54 H 1.09008 * 109.47033 * 60.00004 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0722 -1.4304 -2.4806 7 8 3.3732 -2.2525 -3.0342 8 7 5.2982 -1.1517 -2.9660 9 6 5.8412 -1.9043 -4.1050 10 6 7.2125 -2.4657 -3.7163 11 6 8.1087 -1.3231 -3.2334 12 7 9.4318 -1.8515 -2.8920 13 6 9.5664 -2.8716 -1.8492 14 6 10.5427 -1.3920 -3.5477 15 1 10.4512 -0.9810 -4.5424 16 6 11.7863 -1.4543 -2.9342 17 7 11.9115 -2.0311 -1.7578 18 14 13.2820 -0.7194 -3.7781 19 1 12.8775 -0.1347 -5.0817 20 1 13.8639 0.3421 -2.9180 21 1 14.2940 -1.7822 -4.0055 22 6 7.4854 -0.6717 -1.9968 23 6 6.1173 -0.0896 -2.3660 24 6 4.0804 -1.4416 -0.0005 25 6 3.5705 -0.7205 1.2487 26 1 3.9345 -1.2339 2.1387 27 6 4.0800 0.7221 1.2486 28 6 2.0400 -0.7213 1.2491 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.6765 -0.2072 -2.1393 33 1 1.6766 -1.7488 -1.2495 34 1 3.9329 0.3072 -1.2498 35 1 5.9477 -1.2413 -4.9637 36 1 5.1682 -2.7244 -4.3553 37 1 7.6686 -2.9444 -4.5830 38 1 7.0930 -3.1971 -2.9171 39 1 8.2076 -0.5798 -4.0246 40 1 9.8069 -2.3918 -0.9004 41 1 10.3642 -3.5637 -2.1188 42 1 8.6285 -3.4183 -1.7524 43 1 12.7806 -2.0750 -1.3292 44 1 7.3632 -1.4201 -1.2138 45 1 8.1356 0.1266 -1.6393 46 1 6.2464 0.7213 -3.0828 47 1 5.6264 0.2876 -1.4690 48 1 3.7175 -2.4694 -0.0004 49 1 5.1704 -1.4416 -0.0010 50 1 3.7170 1.2358 2.1388 51 1 5.1700 0.7225 1.2483 52 1 3.7163 1.2358 0.3587 53 1 1.6767 -0.2076 2.1392 54 1 1.6766 -1.7491 1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985811398.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:08 Heat of formation + Delta-G solvation = -55.202475 kcal Electronic energy + Delta-G solvation = -29504.770040 eV Core-core repulsion = 25861.240788 eV Total energy + Delta-G solvation = -3643.529252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74423 -39.84389 -38.72279 -36.70342 -34.26120 -33.84777 -33.02394 -31.74950 -31.31306 -28.04661 -27.65923 -27.32327 -26.57717 -24.89114 -24.00060 -23.15161 -22.19413 -21.06457 -19.77629 -19.41704 -18.77884 -18.16845 -17.09961 -16.98379 -16.24863 -15.99087 -15.75587 -15.64990 -15.32015 -15.04294 -14.91564 -14.78018 -14.49362 -14.34271 -14.21813 -13.90306 -13.72160 -13.39684 -13.18492 -13.09124 -13.02380 -12.76363 -12.68543 -12.63115 -12.45604 -12.32845 -12.18967 -12.08252 -12.03574 -11.93950 -11.83418 -11.80472 -11.59311 -11.42239 -11.24531 -11.10372 -10.80367 -10.60055 -10.50408 -9.65437 -8.72643 -7.81284 -5.29358 1.46863 1.48334 1.58029 1.59675 2.03142 2.50943 3.32720 3.42781 3.62906 3.68249 3.75739 3.85752 4.05122 4.09836 4.15788 4.18966 4.19899 4.31472 4.36406 4.38515 4.40827 4.46675 4.57602 4.60604 4.73174 4.78928 4.81517 4.82339 4.84319 4.85673 4.92844 4.98833 5.01131 5.04743 5.05182 5.09210 5.18535 5.21120 5.27710 5.30612 5.32937 5.41421 5.42762 5.49019 5.51242 5.52673 5.60668 5.66985 5.69471 5.78108 6.36826 6.44577 7.16893 7.19222 7.90646 8.36051 9.22091 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.003004 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.004180 B = 9319.618961 C = 9956.257466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.085 0.915 4 C -0.091 4.091 5 C -0.099 4.099 6 C 0.514 3.486 7 O -0.587 6.587 8 N -0.607 5.607 9 C 0.121 3.879 10 C -0.133 4.133 11 C 0.175 3.825 12 N -0.615 5.615 13 C 0.189 3.811 14 C -0.259 4.259 15 H 0.072 0.928 16 C -0.052 4.052 17 N -0.940 5.940 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.291 1.291 21 H -0.296 1.296 22 C -0.133 4.133 23 C 0.114 3.886 24 C -0.101 4.101 25 C -0.085 4.085 26 H 0.075 0.925 27 C -0.153 4.153 28 C -0.107 4.107 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.063 0.937 40 H -0.001 1.001 41 H 0.019 0.981 42 H 0.012 0.988 43 H 0.246 0.754 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.051 0.949 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.052 0.948 52 H 0.066 0.934 53 H 0.077 0.923 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.120 7.709 5.341 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.129 4.129 5 C -0.120 4.120 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.338 5.338 9 C -0.002 4.002 10 C -0.173 4.173 11 C 0.068 3.932 12 N -0.338 5.338 13 C 0.044 3.956 14 C -0.389 4.389 15 H 0.090 0.910 16 C -0.246 4.246 17 N -0.587 5.587 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.223 1.223 22 C -0.173 4.173 23 C -0.008 4.008 24 C -0.139 4.139 25 C -0.104 4.104 26 H 0.093 0.907 27 C -0.210 4.210 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.017 0.983 41 H 0.037 0.963 42 H 0.031 0.969 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.125 0.875 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.084 0.916 53 H 0.096 0.904 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.318 7.254 5.121 23.093 hybrid contribution 1.529 -0.358 -0.394 1.619 sum -19.789 6.895 4.726 21.482 Atomic orbital electron populations 1.21806 0.94564 1.01721 1.02211 1.21160 0.95917 0.99995 0.93517 0.89654 1.21399 0.91940 1.00982 0.98541 1.21411 0.97949 1.01163 0.91438 1.21292 0.80532 0.82130 0.85659 1.90631 1.57128 1.37047 1.61968 1.48275 1.16123 1.36445 1.33004 1.21499 0.93750 0.96425 0.88498 1.22283 0.95028 0.99165 1.00833 1.20489 0.83741 0.93531 0.95405 1.44165 1.02394 1.44316 1.42886 1.20428 0.94455 0.90087 0.90626 1.19600 0.86890 1.35065 0.97348 0.91009 1.25880 1.01125 1.00752 0.96856 1.70283 1.23017 1.47997 1.17392 0.85194 0.79531 0.77632 0.78064 1.18976 1.21799 1.22311 1.22279 0.95798 1.00309 0.98905 1.21953 0.90138 0.89009 0.99745 1.21487 1.00355 0.98792 0.93252 1.21070 0.95884 0.96935 0.96487 0.90660 1.21976 1.01009 0.95284 1.02736 1.21642 0.94320 1.00540 0.97987 0.93303 0.91467 0.92602 0.92239 0.92927 0.86781 0.90095 0.90501 0.91730 0.93630 0.91844 0.98253 0.96251 0.96928 0.94447 0.93393 0.91666 0.89524 0.87458 0.93023 0.91986 0.91552 0.92852 0.91557 0.90420 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 71.98 0.66 -1.16 16 2 C -0.09 -1.22 2.45 -10.80 -0.03 -1.25 16 3 H 0.09 1.02 6.43 -2.38 -0.02 1.01 16 4 C -0.09 -1.76 4.01 30.60 0.12 -1.64 16 5 C -0.10 -2.02 1.41 -11.54 -0.02 -2.03 16 6 C 0.51 14.44 6.81 87.66 0.60 15.04 16 7 O -0.59 -20.83 15.52 -3.04 -0.05 -20.88 16 8 N -0.61 -16.41 2.97 -818.90 -2.43 -18.84 16 9 C 0.12 3.53 6.42 86.36 0.55 4.09 16 10 C -0.13 -4.55 5.32 30.67 0.16 -4.39 16 11 C 0.18 6.65 2.55 45.02 0.11 6.76 16 12 N -0.61 -30.08 2.82 -702.63 -1.98 -32.06 16 13 C 0.19 9.52 8.00 127.77 1.02 10.54 16 14 C -0.26 -13.91 9.59 84.03 0.81 -13.10 16 15 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 16 C -0.05 -2.85 5.38 84.86 0.46 -2.40 16 17 N -0.94 -55.10 10.12 21.65 0.22 -54.88 16 18 Si 0.97 44.48 29.56 68.60 2.03 46.51 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 22 C -0.13 -4.26 5.34 30.67 0.16 -4.09 16 23 C 0.11 2.67 6.20 86.36 0.54 3.21 16 24 C -0.10 -2.04 4.59 30.59 0.14 -1.90 16 25 C -0.09 -1.30 3.20 -10.78 -0.03 -1.34 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 C -0.15 -1.99 8.50 71.98 0.61 -1.38 16 28 C -0.11 -1.48 4.74 30.61 0.14 -1.33 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.25 7.87 -2.39 -0.02 1.23 16 34 H 0.11 1.87 4.60 -2.39 -0.01 1.85 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.39 7.03 -2.38 -0.02 2.38 16 37 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.04 1.69 6.72 -2.39 -0.02 1.67 16 39 H 0.06 2.39 7.88 -2.38 -0.02 2.37 16 40 H 0.00 -0.05 7.45 -2.39 -0.02 -0.06 16 41 H 0.02 1.06 7.01 -2.39 -0.02 1.04 16 42 H 0.01 0.56 6.47 -2.39 -0.02 0.54 16 43 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 44 H 0.05 1.65 7.72 -2.39 -0.02 1.64 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.11 1.97 5.17 -2.39 -0.01 1.96 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.06 1.37 7.84 -2.39 -0.02 1.35 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.07 0.77 4.81 -2.39 -0.01 0.76 16 53 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 54 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -66.02 393.10 4.65 -61.37 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.85 Total: 15.15 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 6.02 Total: 3.62 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.20 Total: -105.78 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -66.02 4.65 -61.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985811398.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.170 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds