Wall clock time and date at job start Tue Mar 31 2020 15:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47337 * 2 1 4 4 C 1.52998 * 109.47248 * 120.00376 * 2 1 3 5 5 C 1.53001 * 109.47242 * 59.99554 * 4 2 1 6 6 C 1.50703 * 109.47059 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99875 * 352.88414 * 6 5 4 8 8 N 1.34775 * 119.99700 * 172.88646 * 6 5 4 9 9 C 1.46923 * 120.63251 * 5.42264 * 8 6 5 10 10 C 1.53187 * 108.77764 * 233.59028 * 9 8 6 11 11 C 1.53045 * 109.31276 * 305.36333 * 10 9 8 12 12 N 1.46504 * 109.46128 * 181.38403 * 11 10 9 13 13 C 1.46504 * 119.99848 * 299.97916 * 12 11 10 14 14 C 1.36934 * 119.99915 * 119.97135 * 12 11 10 15 15 H 1.08003 * 120.00145 * 338.45413 * 14 12 11 16 16 C 1.38810 * 119.99689 * 158.44690 * 14 12 11 17 17 N 1.31615 * 120.00258 * 343.98032 * 16 14 12 18 18 Si 1.86796 * 119.99821 * 163.71329 * 16 14 12 19 19 H 1.48503 * 109.47086 * 265.29381 * 18 16 14 20 20 H 1.48501 * 109.47485 * 25.28877 * 18 16 14 21 21 H 1.48500 * 109.47677 * 145.29545 * 18 16 14 22 22 C 1.53044 * 109.52495 * 61.37554 * 11 10 9 23 23 C 1.46926 * 120.62679 * 185.40749 * 8 6 5 24 24 C 1.52996 * 109.46909 * 60.00045 * 5 4 2 25 25 C 1.53005 * 109.47536 * 300.00253 * 24 5 4 26 26 H 1.08997 * 109.46359 * 299.99842 * 25 24 5 27 27 C 1.53000 * 109.47245 * 180.02562 * 25 24 5 28 28 C 1.53001 * 109.47159 * 240.00367 * 2 1 3 29 29 H 1.09004 * 109.46651 * 300.00254 * 1 2 3 30 30 H 1.09000 * 109.46812 * 59.99730 * 1 2 3 31 31 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47188 * 299.99557 * 4 2 1 33 33 H 1.09001 * 109.47464 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47084 * 300.00469 * 5 4 2 35 35 H 1.09003 * 109.58659 * 113.80233 * 9 8 6 36 36 H 1.09001 * 109.70487 * 353.44957 * 9 8 6 37 37 H 1.09003 * 109.50087 * 185.41614 * 10 9 8 38 38 H 1.09002 * 109.49947 * 65.31965 * 10 9 8 39 39 H 1.08994 * 109.46439 * 301.35679 * 11 10 9 40 40 H 1.09005 * 109.46650 * 264.75612 * 13 12 11 41 41 H 1.08999 * 109.47196 * 24.76277 * 13 12 11 42 42 H 1.09001 * 109.46535 * 144.76397 * 13 12 11 43 43 H 0.97005 * 120.00336 * 179.72573 * 17 16 14 44 44 H 1.09002 * 109.49786 * 58.57707 * 22 11 10 45 45 H 1.08991 * 109.49846 * 178.67760 * 22 11 10 46 46 H 1.08999 * 109.58471 * 246.19271 * 23 8 6 47 47 H 1.08993 * 109.58634 * 6.47903 * 23 8 6 48 48 H 1.09008 * 109.47460 * 60.00002 * 24 5 4 49 49 H 1.09005 * 109.46983 * 179.97438 * 24 5 4 50 50 H 1.09001 * 109.46891 * 299.99875 * 27 25 24 51 51 H 1.08996 * 109.47219 * 59.99715 * 27 25 24 52 52 H 1.09001 * 109.46864 * 179.97438 * 27 25 24 53 53 H 1.08995 * 109.47396 * 59.99491 * 28 2 1 54 54 H 1.08998 * 109.47698 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0319 -2.8741 2.4799 7 8 2.8313 -2.3289 3.2111 8 7 1.5923 -4.1151 2.7680 9 6 0.7171 -4.8352 1.8330 10 6 -0.5363 -5.2940 2.5848 11 6 -0.1207 -6.1094 3.8114 12 7 -1.3176 -6.5778 4.5145 13 6 -2.2822 -5.6102 5.0433 14 6 -1.5347 -7.9200 4.6774 15 1 -1.0509 -8.6288 4.0217 16 6 -2.3767 -8.3696 5.6853 17 7 -2.7144 -7.5633 6.6692 18 14 -3.0364 -10.1166 5.6412 19 1 -4.3748 -10.1242 4.9977 20 1 -2.1086 -10.9767 4.8637 21 1 -3.1506 -10.6378 7.0270 22 6 0.7118 -5.2331 4.7501 23 6 1.9796 -4.7738 4.0230 24 6 2.0399 -2.8850 -0.0001 25 6 1.5300 -2.1637 -1.2494 26 1 0.4400 -2.1637 -1.2493 27 6 2.0394 -2.8853 -2.4986 28 6 2.0400 -0.7212 -1.2493 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6768 -0.2075 2.1392 33 1 3.1301 -0.7217 1.2490 34 1 0.4400 -2.1637 1.2492 35 1 1.2428 -5.7032 1.4352 36 1 0.4310 -4.1745 1.0146 37 1 -1.1489 -5.9116 1.9279 38 1 -1.1085 -4.4228 2.9038 39 1 0.4725 -6.9668 3.4936 40 1 -2.0633 -5.4158 6.0933 41 1 -2.2108 -4.6805 4.4789 42 1 -3.2902 -6.0147 4.9511 43 1 -3.3059 -7.8762 7.3714 44 1 0.1277 -4.3625 5.0486 45 1 0.9877 -5.8073 5.6345 46 1 2.6082 -5.6369 3.8037 47 1 2.5288 -4.0715 4.6499 48 1 3.1300 -2.8850 -0.0002 49 1 1.6769 -3.9128 0.0001 50 1 3.1294 -2.8857 -2.4988 51 1 1.6757 -3.9128 -2.4984 52 1 1.6757 -2.3716 -3.3886 53 1 1.6767 -0.2074 -2.1392 54 1 3.1300 -0.7216 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985811399.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:11 Heat of formation + Delta-G solvation = -53.949538 kcal Electronic energy + Delta-G solvation = -29425.016254 eV Core-core repulsion = 25781.541333 eV Total energy + Delta-G solvation = -3643.474921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.78186 -39.81720 -38.73596 -36.72491 -34.18793 -33.91536 -33.14871 -31.66296 -31.30532 -28.03351 -27.65728 -27.26138 -26.66130 -24.75372 -24.13947 -23.14936 -22.18616 -21.01519 -19.70735 -19.55606 -18.75859 -18.07925 -17.12731 -16.86386 -16.59037 -16.04528 -15.70328 -15.41004 -15.25389 -15.15269 -14.88825 -14.77940 -14.67334 -14.25508 -14.11237 -13.91270 -13.67014 -13.44673 -13.17923 -13.09302 -13.04596 -12.81027 -12.67397 -12.60167 -12.38003 -12.33737 -12.16114 -12.11298 -12.05258 -11.96123 -11.80293 -11.72971 -11.58169 -11.42273 -11.22544 -11.12065 -10.76350 -10.63730 -10.47470 -9.64681 -8.77735 -7.80718 -5.27512 1.47547 1.48684 1.57608 1.61901 2.03078 2.52197 3.31727 3.41507 3.60673 3.70222 3.76385 3.86551 4.05539 4.13799 4.16706 4.19920 4.21725 4.34491 4.36646 4.38747 4.42814 4.46734 4.54147 4.62351 4.70163 4.78329 4.81784 4.83528 4.85021 4.88563 4.91020 4.99696 5.02736 5.06639 5.08620 5.12341 5.18701 5.23229 5.24486 5.30609 5.32822 5.38172 5.43612 5.49611 5.51999 5.53747 5.61425 5.67949 5.68346 5.71188 6.33946 6.46063 7.16332 7.17469 7.90029 8.34410 9.22288 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.002912 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.677405 B = 9614.493530 C = 9931.854726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.090 4.090 5 C -0.099 4.099 6 C 0.513 3.487 7 O -0.590 6.590 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.136 4.136 11 C 0.173 3.827 12 N -0.610 5.610 13 C 0.182 3.818 14 C -0.260 4.260 15 H 0.075 0.925 16 C -0.056 4.056 17 N -0.940 5.940 18 Si 0.966 3.034 19 H -0.288 1.288 20 H -0.265 1.265 21 H -0.300 1.300 22 C -0.131 4.131 23 C 0.123 3.877 24 C -0.109 4.109 25 C -0.088 4.088 26 H 0.084 0.916 27 C -0.146 4.146 28 C -0.107 4.107 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.063 0.937 40 H -0.004 1.004 41 H 0.028 0.972 42 H 0.012 0.988 43 H 0.246 0.754 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.059 0.941 52 H 0.063 0.937 53 H 0.075 0.925 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 12.759 -20.479 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.119 4.119 6 C 0.303 3.697 7 O -0.470 6.470 8 N -0.338 5.338 9 C -0.013 4.013 10 C -0.176 4.176 11 C 0.067 3.933 12 N -0.332 5.332 13 C 0.037 3.963 14 C -0.390 4.390 15 H 0.093 0.907 16 C -0.251 4.251 17 N -0.587 5.587 18 Si 0.795 3.205 19 H -0.215 1.215 20 H -0.189 1.189 21 H -0.227 1.227 22 C -0.171 4.171 23 C 0.000 4.000 24 C -0.147 4.147 25 C -0.106 4.106 26 H 0.102 0.898 27 C -0.203 4.203 28 C -0.145 4.145 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.015 0.985 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.070 0.930 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.094 0.906 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.811 12.981 -19.972 25.397 hybrid contribution -0.565 -0.953 1.290 1.700 sum 8.246 12.028 -18.682 23.700 Atomic orbital electron populations 1.21963 0.94703 1.02373 1.01895 1.21097 0.96356 0.99179 0.93913 0.90668 1.21323 1.00361 0.92988 0.98150 1.21372 1.02527 0.95995 0.92050 1.21356 0.80202 0.80657 0.87504 1.90638 1.36148 1.66910 1.53338 1.48238 1.49227 1.15808 1.20518 1.22151 0.89778 0.97714 0.91622 1.22316 0.97699 0.99989 0.97619 1.20531 0.86884 0.94813 0.91118 1.44218 1.21085 1.02443 1.65445 1.20394 0.91581 0.89604 0.94724 1.19621 1.25387 0.84012 1.09955 0.90688 1.25746 1.02721 1.01342 0.95280 1.70266 1.39236 1.37141 1.12048 0.85253 0.78519 0.80430 0.76284 1.21528 1.18939 1.22706 1.22288 0.96457 0.99266 0.99138 1.21455 0.95969 0.97241 0.85383 1.21830 1.01025 0.99736 0.92108 1.21154 1.01174 0.94600 0.93699 0.89808 1.21810 1.01058 1.00544 0.96924 1.21632 1.00422 0.95112 0.97302 0.93420 0.91537 0.91860 0.93279 0.92672 0.87348 0.89445 0.86512 0.90222 0.92810 0.91908 0.98542 0.95349 0.96934 0.94504 0.94025 0.93104 0.90339 0.90933 0.92273 0.89582 0.93015 0.92162 0.91843 0.90621 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.50 71.98 0.61 -1.37 16 2 C -0.09 -1.24 3.19 -10.79 -0.03 -1.27 16 3 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.09 -1.81 4.05 30.59 0.12 -1.69 16 5 C -0.10 -1.94 1.42 -11.54 -0.02 -1.95 16 6 C 0.51 14.35 7.03 87.66 0.62 14.97 16 7 O -0.59 -21.26 15.42 -3.04 -0.05 -21.31 16 8 N -0.61 -16.24 2.97 -818.91 -2.43 -18.68 16 9 C 0.11 2.35 5.14 86.36 0.44 2.80 16 10 C -0.14 -3.96 5.32 30.67 0.16 -3.80 16 11 C 0.17 6.54 2.55 45.02 0.11 6.66 16 12 N -0.61 -29.64 2.81 -702.60 -1.97 -31.61 16 13 C 0.18 9.03 8.05 127.77 1.03 10.06 16 14 C -0.26 -13.92 9.59 84.03 0.81 -13.12 16 15 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 16 C -0.06 -3.12 5.04 84.86 0.43 -2.69 16 17 N -0.94 -56.10 10.80 21.65 0.23 -55.87 16 18 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 22 C -0.13 -4.83 5.34 30.68 0.16 -4.66 16 23 C 0.12 3.76 6.42 86.36 0.55 4.32 16 24 C -0.11 -1.65 4.04 30.59 0.12 -1.52 16 25 C -0.09 -1.01 2.44 -10.79 -0.03 -1.03 16 26 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 27 C -0.15 -1.45 9.20 71.98 0.66 -0.79 16 28 C -0.11 -1.27 4.73 30.60 0.14 -1.13 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.80 4.81 -2.39 -0.01 0.79 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 34 H 0.11 1.92 5.87 -2.39 -0.01 1.91 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.12 1.85 4.42 -2.39 -0.01 1.84 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 1.66 6.72 -2.39 -0.02 1.65 16 39 H 0.06 2.36 7.85 -2.39 -0.02 2.34 16 40 H 0.00 -0.21 7.36 -2.38 -0.02 -0.22 16 41 H 0.03 1.21 6.47 -2.39 -0.02 1.19 16 42 H 0.01 0.65 7.33 -2.39 -0.02 0.63 16 43 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 44 H 0.04 1.65 7.72 -2.39 -0.02 1.63 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.07 2.42 7.04 -2.39 -0.02 2.40 16 48 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.09 1.14 5.26 -2.38 -0.01 1.13 16 50 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -67.86 390.37 4.57 -63.30 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.85 Total: 13.63 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.91 Total: 3.76 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.17 Total: -106.16 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.86 4.57 -63.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985811399.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.346 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds