Wall clock time and date at job start Tue Mar 31 2020 15:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46758 * 2 1 4 4 C 1.52993 * 109.47208 * 239.99921 * 2 1 3 5 5 C 1.53006 * 109.46918 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46835 * 59.99933 * 5 4 2 7 7 C 1.52993 * 109.47422 * 299.99758 * 6 5 4 8 8 C 1.52999 * 109.46865 * 119.99658 * 2 1 3 9 9 H 1.09003 * 109.47154 * 60.00584 * 8 2 1 10 10 C 1.53001 * 109.47347 * 300.00389 * 8 2 1 11 11 C 1.50700 * 109.47010 * 175.00286 * 10 8 2 12 12 O 1.21280 * 120.00019 * 359.97438 * 11 10 8 13 13 N 1.34780 * 120.00140 * 180.02562 * 11 10 8 14 14 C 1.46933 * 120.62574 * 359.71453 * 13 11 10 15 15 C 1.52758 * 109.00583 * 233.58492 * 14 13 11 16 16 C 1.53042 * 109.38825 * 305.58847 * 15 14 13 17 17 N 1.46498 * 109.46317 * 181.26346 * 16 15 14 18 18 C 1.46499 * 119.99775 * 299.93084 * 17 16 15 19 19 C 1.36934 * 120.00072 * 119.93605 * 17 16 15 20 20 H 1.08000 * 120.00208 * 22.99054 * 19 17 16 21 21 C 1.38814 * 119.99799 * 202.99295 * 19 17 16 22 22 N 1.31624 * 120.00090 * 11.63633 * 21 19 17 23 23 Si 1.86797 * 119.99921 * 191.63408 * 21 19 17 24 24 H 1.48492 * 109.47272 * 90.00180 * 23 21 19 25 25 H 1.48500 * 109.47088 * 210.00059 * 23 21 19 26 26 H 1.48501 * 109.47197 * 330.00298 * 23 21 19 27 27 C 1.53043 * 109.53526 * 61.24132 * 16 15 14 28 28 C 1.46917 * 120.63514 * 179.97438 * 13 11 10 29 29 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47304 * 300.00139 * 1 2 3 31 31 H 1.08994 * 109.47143 * 60.00315 * 1 2 3 32 32 H 1.08994 * 109.46922 * 60.00261 * 4 2 1 33 33 H 1.08993 * 109.47150 * 299.99607 * 4 2 1 34 34 H 1.08998 * 109.47014 * 179.97438 * 5 4 2 35 35 H 1.09003 * 109.47078 * 300.00097 * 5 4 2 36 36 H 1.09003 * 109.47154 * 60.00211 * 6 5 4 37 37 H 1.09004 * 109.46987 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47628 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47543 * 299.99880 * 7 6 5 40 40 H 1.09008 * 109.47034 * 294.99730 * 10 8 2 41 41 H 1.08996 * 109.47518 * 55.00046 * 10 8 2 42 42 H 1.08998 * 109.59057 * 353.42341 * 14 13 11 43 43 H 1.09004 * 109.58356 * 113.85006 * 14 13 11 44 44 H 1.09004 * 109.56245 * 185.55193 * 15 14 13 45 45 H 1.08998 * 109.36353 * 65.50612 * 15 14 13 46 46 H 1.09002 * 109.46094 * 301.22346 * 16 15 14 47 47 H 1.09009 * 109.46837 * 93.85073 * 18 17 16 48 48 H 1.09002 * 109.47348 * 213.84890 * 18 17 16 49 49 H 1.09004 * 109.47480 * 333.85254 * 18 17 16 50 50 H 0.96992 * 119.99832 * 179.97438 * 22 21 19 51 51 H 1.08995 * 109.49619 * 178.68652 * 27 16 15 52 52 H 1.09006 * 109.49586 * 58.58814 * 27 16 15 53 53 H 1.08998 * 109.58655 * 246.15592 * 28 13 11 54 54 H 1.09002 * 109.58471 * 6.57492 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2494 6 6 4.0805 -1.4415 -0.0001 7 6 3.5705 -0.7202 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6767 -1.7489 1.2493 10 6 1.5299 0.0001 2.4985 11 6 1.9286 -0.7782 3.7259 12 8 2.5583 -1.8085 3.6126 13 7 1.5845 -0.3298 4.9494 14 6 0.8262 0.9193 5.1030 15 6 1.5726 1.8390 6.0676 16 6 1.8323 1.0956 7.3799 17 7 2.5213 1.9860 8.3172 18 6 3.8273 2.5496 7.9666 19 6 1.9447 2.2915 9.5211 20 1 1.2056 1.6304 9.9491 21 6 2.3102 3.4508 10.1915 22 7 3.0297 4.3666 9.5782 23 14 1.7809 3.7111 11.9639 24 1 2.8128 3.1551 12.8754 25 1 1.6215 5.1643 12.2245 26 1 0.4875 3.0209 12.2007 27 6 2.7043 -0.1324 7.1085 28 6 1.9655 -1.0777 6.1553 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2074 -2.1391 33 1 1.6768 -1.7489 -1.2491 34 1 3.9334 -1.2349 -2.1391 35 1 3.9330 0.3072 -1.2496 36 1 3.7176 -2.4693 0.0001 37 1 5.1705 -1.4415 -0.0005 38 1 3.9338 -1.2341 2.1391 39 1 3.9335 0.3075 1.2489 40 1 1.9645 0.9987 2.5445 41 1 0.4436 0.0783 2.4549 42 1 0.7293 1.4094 4.1342 43 1 -0.1631 0.6992 5.5041 44 1 0.9710 2.7263 6.2651 45 1 2.5227 2.1348 5.6229 46 1 0.8829 0.7786 7.8117 47 1 3.6895 3.5311 7.5128 48 1 4.4344 2.6475 8.8666 49 1 4.3298 1.8897 7.2593 50 1 3.2847 5.1768 10.0465 51 1 2.9082 -0.6483 8.0468 52 1 3.6439 0.1819 6.6539 53 1 1.0708 -1.4637 6.6437 54 1 2.6200 -1.9049 5.8806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985812582.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:24 Heat of formation + Delta-G solvation = -60.382431 kcal Electronic energy + Delta-G solvation = -28891.818659 eV Core-core repulsion = 25248.064787 eV Total energy + Delta-G solvation = -3643.753872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.44597 -39.84572 -38.68313 -36.66363 -34.22541 -33.77747 -32.98074 -31.96147 -31.47636 -28.69938 -28.03757 -26.91279 -26.08509 -24.15252 -23.83908 -22.83961 -21.89711 -21.02838 -20.52390 -19.62354 -18.75319 -18.09128 -16.96736 -16.85620 -16.47122 -15.92895 -15.73002 -15.42445 -15.26055 -15.09528 -14.98461 -14.86239 -14.81955 -14.38209 -14.13316 -13.78168 -13.57987 -13.31161 -13.15250 -13.13686 -12.89812 -12.76709 -12.67671 -12.60386 -12.44160 -12.34762 -12.28227 -12.17369 -12.04007 -11.82696 -11.81818 -11.68925 -11.58677 -11.26304 -11.24124 -11.03556 -10.77890 -10.62054 -10.44343 -9.59160 -8.75599 -7.80750 -5.28895 1.46937 1.48534 1.56673 1.69763 2.08900 2.51483 3.32647 3.53268 3.64608 3.72961 3.82177 3.90825 3.98353 4.14550 4.18590 4.21647 4.28987 4.33996 4.40288 4.43935 4.51354 4.58950 4.60217 4.64749 4.69035 4.75987 4.78950 4.82458 4.84483 4.87597 4.91776 4.93364 5.02367 5.02895 5.11188 5.11436 5.24751 5.25081 5.26757 5.33057 5.35506 5.40472 5.43657 5.50510 5.53500 5.58015 5.62499 5.68244 5.70019 5.72822 6.34996 6.50865 7.17039 7.25299 7.89806 8.34690 9.22497 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025384 B = 0.002521 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.793376 B =11106.205899 C =11153.217822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.058 4.058 9 H 0.059 0.941 10 C -0.135 4.135 11 C 0.510 3.490 12 O -0.580 6.580 13 N -0.610 5.610 14 C 0.117 3.883 15 C -0.136 4.136 16 C 0.174 3.826 17 N -0.612 5.612 18 C 0.184 3.816 19 C -0.259 4.259 20 H 0.072 0.928 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.267 1.267 27 C -0.133 4.133 28 C 0.122 3.878 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.003 0.997 48 H 0.011 0.989 49 H 0.020 0.980 50 H 0.246 0.754 51 H 0.064 0.936 52 H 0.045 0.955 53 H 0.079 0.921 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -9.079 -21.761 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.077 4.077 9 H 0.078 0.922 10 C -0.174 4.174 11 C 0.300 3.700 12 O -0.460 6.460 13 N -0.343 5.343 14 C -0.005 4.005 15 C -0.176 4.176 16 C 0.067 3.933 17 N -0.334 5.334 18 C 0.039 3.961 19 C -0.389 4.389 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.586 5.586 23 Si 0.796 3.204 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.191 1.191 27 C -0.173 4.173 28 C -0.001 4.001 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.021 0.979 48 H 0.030 0.970 49 H 0.038 0.962 50 H 0.056 0.944 51 H 0.082 0.918 52 H 0.064 0.936 53 H 0.098 0.902 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.187 -9.464 -21.738 24.270 hybrid contribution 0.372 0.527 1.566 1.694 sum -4.815 -8.938 -20.172 22.583 Atomic orbital electron populations 1.21918 0.94403 1.01939 1.02510 1.21148 0.96078 0.99490 0.93494 0.90689 1.21570 0.95149 1.00581 0.97584 1.21540 0.96054 1.00681 0.97206 1.21481 0.99936 0.99130 0.94821 1.21668 0.95660 1.00195 0.98233 1.20872 0.95046 0.98959 0.92784 0.92213 1.21929 1.04409 1.00138 0.90939 1.21301 0.78104 0.85379 0.85207 1.90622 1.41899 1.26760 1.86732 1.48304 1.55336 1.24881 1.05790 1.21787 0.94596 0.83025 1.01125 1.22226 1.00195 0.98819 0.96377 1.20504 0.94305 0.89232 0.89226 1.44176 1.17948 1.54637 1.16661 1.20388 0.85771 0.93975 0.95934 1.19572 1.20703 1.02434 0.96207 0.91045 1.25773 1.01152 0.95464 1.02546 1.70229 1.43165 1.08700 1.36549 0.85260 0.78244 0.76387 0.80517 1.21743 1.22278 1.19122 1.22278 0.99064 0.97155 0.98769 1.21474 0.99786 0.94146 0.84699 0.93010 0.91711 0.91788 0.90824 0.92438 0.91465 0.91840 0.92913 0.92451 0.93025 0.92515 0.87790 0.86365 0.87192 0.89658 0.91862 0.93556 0.91940 0.97903 0.96971 0.96205 0.94431 0.91751 0.93637 0.90248 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.85 71.98 0.64 -1.09 16 2 C -0.08 -1.16 2.25 -10.80 -0.02 -1.18 16 3 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.48 5.20 30.59 0.16 -1.32 16 5 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 6 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 7 C -0.12 -2.61 4.95 30.61 0.15 -2.46 16 8 C -0.06 -1.08 1.37 -10.78 -0.01 -1.10 16 9 H 0.06 1.33 7.95 -2.39 -0.02 1.32 16 10 C -0.13 -2.46 3.31 29.85 0.10 -2.36 16 11 C 0.51 13.40 7.41 87.66 0.65 14.05 16 12 O -0.58 -19.25 13.38 -3.03 -0.04 -19.29 16 13 N -0.61 -15.85 2.98 -819.65 -2.44 -18.29 16 14 C 0.12 2.65 6.31 86.22 0.54 3.20 16 15 C -0.14 -4.38 5.32 30.53 0.16 -4.22 16 16 C 0.17 6.61 2.55 45.02 0.11 6.72 16 17 N -0.61 -29.98 2.81 -702.61 -1.97 -31.95 16 18 C 0.18 9.24 8.04 127.77 1.03 10.27 16 19 C -0.26 -13.95 9.59 84.03 0.81 -13.15 16 20 H 0.07 3.71 7.82 -2.91 -0.02 3.69 16 21 C -0.05 -3.03 5.12 84.86 0.43 -2.59 16 22 N -0.94 -55.39 10.64 21.65 0.23 -55.16 16 23 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.13 -4.49 5.32 30.69 0.16 -4.33 16 28 C 0.12 3.47 6.44 86.38 0.56 4.02 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.66 6.32 -2.39 -0.02 0.65 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.05 1.46 5.95 -2.38 -0.01 1.44 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.71 7.68 -2.38 -0.02 1.69 16 41 H 0.12 1.61 5.98 -2.39 -0.01 1.60 16 42 H 0.11 1.83 5.93 -2.39 -0.01 1.82 16 43 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.05 1.61 7.72 -2.39 -0.02 1.59 16 46 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 47 H 0.00 0.15 7.42 -2.38 -0.02 0.13 16 48 H 0.01 0.64 7.22 -2.39 -0.02 0.62 16 49 H 0.02 0.87 6.46 -2.39 -0.02 0.86 16 50 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.04 1.67 6.72 -2.38 -0.02 1.65 16 53 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 54 H 0.08 2.37 7.01 -2.39 -0.02 2.35 16 Total: -1.00 -66.16 394.92 4.47 -61.69 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.84 Total: 15.23 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.83 Total: 0.96 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.19 Total: -105.40 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.04 Total: -19.29 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.16 4.47 -61.69 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985812582.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds