Wall clock time and date at job start Tue Mar 31 2020 15:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47148 * 119.99864 * 2 1 3 5 5 C 1.52996 * 109.47103 * 59.99720 * 4 2 1 6 6 C 1.53004 * 109.46824 * 60.00468 * 5 4 2 7 7 C 1.53003 * 109.46898 * 299.99657 * 6 5 4 8 8 C 1.52996 * 109.47103 * 60.00514 * 7 6 5 9 9 H 1.08996 * 109.47422 * 59.99522 * 8 7 6 10 10 C 1.53003 * 109.47103 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.46784 * 294.99333 * 10 8 7 12 12 O 1.21284 * 120.00539 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00067 * 179.97438 * 11 10 8 14 14 C 1.46923 * 120.63567 * 180.02562 * 13 11 10 15 15 C 1.53188 * 108.89554 * 126.30212 * 14 13 11 16 16 C 1.53351 * 109.15017 * 54.57606 * 15 14 13 17 17 N 1.46502 * 109.41859 * 178.67361 * 16 15 14 18 18 C 1.46504 * 119.99620 * 60.13278 * 17 16 15 19 19 C 1.36930 * 120.00271 * 240.12997 * 17 16 15 20 20 H 1.08001 * 120.00256 * 22.99971 * 19 17 16 21 21 C 1.38811 * 120.00346 * 202.99658 * 19 17 16 22 22 N 1.31621 * 119.99572 * 11.65239 * 21 19 17 23 23 Si 1.86796 * 120.00291 * 191.64783 * 21 19 17 24 24 H 1.48489 * 109.47160 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47060 * 120.00509 * 23 21 19 26 26 H 1.48504 * 109.47044 * 240.00135 * 23 21 19 27 27 C 1.53039 * 109.60889 * 298.71611 * 16 15 14 28 28 C 1.46935 * 120.62842 * 359.97438 * 13 11 10 29 29 H 1.09001 * 109.47527 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47645 * 300.00340 * 1 2 3 31 31 H 1.09005 * 109.47117 * 60.00157 * 1 2 3 32 32 H 1.08996 * 109.47372 * 180.02562 * 4 2 1 33 33 H 1.09007 * 109.46878 * 300.00186 * 4 2 1 34 34 H 1.08999 * 109.47444 * 179.97438 * 5 4 2 35 35 H 1.08996 * 109.47422 * 300.00478 * 5 4 2 36 36 H 1.08996 * 109.47113 * 59.99820 * 6 5 4 37 37 H 1.09006 * 109.47177 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47372 * 300.00005 * 7 6 5 39 39 H 1.09007 * 109.46878 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.46577 * 174.99616 * 10 8 7 41 41 H 1.08995 * 109.47450 * 54.99879 * 10 8 7 42 42 H 1.09006 * 109.58520 * 246.16203 * 14 13 11 43 43 H 1.08998 * 109.58410 * 6.44249 * 14 13 11 44 44 H 1.09000 * 109.49891 * 174.66087 * 15 14 13 45 45 H 1.09008 * 109.49820 * 294.75931 * 15 14 13 46 46 H 1.08999 * 109.41794 * 58.75781 * 16 15 14 47 47 H 1.08998 * 109.47247 * 93.84434 * 18 17 16 48 48 H 1.09002 * 109.46901 * 213.84311 * 18 17 16 49 49 H 1.08996 * 109.47468 * 333.84267 * 18 17 16 50 50 H 0.97005 * 119.99700 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.49461 * 301.41608 * 27 16 15 52 52 H 1.09000 * 109.52298 * 181.34099 * 27 16 15 53 53 H 1.08999 * 109.58234 * 353.41813 * 28 13 11 54 54 H 1.09001 * 109.58215 * 113.69808 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 -1.2492 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7213 -1.2492 10 6 1.5305 -0.0003 -2.4988 11 6 2.1320 -0.6357 -3.7257 12 8 2.8929 -1.5734 -3.6120 13 7 1.8237 -0.1629 -4.9495 14 6 2.4016 -0.7722 -6.1551 15 6 1.2667 -1.1570 -7.1093 16 6 0.3971 0.0768 -7.3801 17 7 -0.6720 -0.2771 -8.3172 18 6 -1.6392 -1.3196 -7.9652 19 6 -0.7672 0.3666 -9.5221 20 1 0.1027 0.8421 -9.9506 21 6 -1.9818 0.4080 -10.1928 22 7 -3.0854 0.0367 -9.5792 23 14 -2.0500 0.9909 -11.9662 24 1 -0.6831 1.3488 -12.4226 25 1 -2.5893 -0.0949 -12.8238 26 1 -2.9321 2.1818 -12.0622 27 6 -0.2174 0.5700 -6.0682 28 6 0.9023 0.9712 -5.1036 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 3.1299 -0.7209 1.2495 33 1 1.6766 -0.2073 2.1393 34 1 1.8936 -2.6777 2.1391 35 1 0.4400 -2.1637 1.2493 36 1 3.1300 -2.8850 0.0002 37 1 1.6770 -3.9128 0.0003 38 1 0.4400 -2.1638 -1.2492 39 1 1.8930 -2.6779 -2.1392 40 1 1.8189 1.0500 -2.4551 41 1 0.4443 -0.0771 -2.5452 42 1 3.0638 -0.0577 -6.6442 43 1 2.9654 -1.6635 -5.8796 44 1 1.6872 -1.5227 -8.0461 45 1 0.6575 -1.9380 -6.6539 46 1 1.0123 0.8659 -7.8123 47 1 -2.5185 -0.8614 -7.5123 48 1 -1.9338 -1.8605 -8.8645 49 1 -1.1851 -2.0124 -7.2569 50 1 -3.9342 0.0660 -10.0478 51 1 -0.8126 -0.2271 -5.6229 52 1 -0.8540 1.4325 -6.2657 53 1 0.4748 1.2288 -4.1346 54 1 1.4424 1.8290 -5.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985812583.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:28 Heat of formation + Delta-G solvation = -56.892062 kcal Electronic energy + Delta-G solvation = -29009.206389 eV Core-core repulsion = 25365.603871 eV Total energy + Delta-G solvation = -3643.602518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.48359 -40.02017 -38.73283 -36.66167 -34.12123 -33.64385 -32.59634 -31.94466 -31.46301 -28.81575 -28.03764 -27.16016 -26.09531 -24.14116 -23.83300 -23.13569 -22.41144 -21.01069 -19.63409 -19.28212 -18.75257 -18.07416 -16.97693 -16.88899 -16.55577 -16.42247 -15.72341 -15.49911 -15.18758 -15.15362 -14.96665 -14.88437 -14.52049 -14.27310 -13.98677 -13.76891 -13.71362 -13.43208 -13.22592 -13.13772 -13.03385 -12.80847 -12.69996 -12.56110 -12.39634 -12.35064 -12.18747 -12.13323 -12.02388 -11.87691 -11.82509 -11.62596 -11.57351 -11.23773 -11.07589 -10.97895 -10.76359 -10.62638 -10.44640 -9.58921 -8.75311 -7.80867 -5.28790 1.46120 1.48170 1.57801 1.70177 2.09250 2.51391 3.32752 3.54025 3.64642 3.74263 3.83001 3.90748 3.98805 4.14762 4.21243 4.26759 4.31553 4.34903 4.40390 4.43990 4.53043 4.54238 4.59784 4.60373 4.70161 4.77316 4.80709 4.81933 4.84867 4.87412 4.91622 4.95148 5.02454 5.06649 5.10539 5.15043 5.24491 5.24838 5.25348 5.31803 5.36966 5.40721 5.46433 5.50646 5.52822 5.61558 5.63587 5.68574 5.72479 5.74346 6.35064 6.51236 7.17080 7.25702 7.89872 8.34739 9.22524 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.002575 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.163768 B =10869.718574 C =11146.059213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.059 4.059 9 H 0.059 0.941 10 C -0.133 4.133 11 C 0.509 3.491 12 O -0.580 6.580 13 N -0.610 5.610 14 C 0.122 3.878 15 C -0.132 4.132 16 C 0.174 3.826 17 N -0.612 5.612 18 C 0.185 3.815 19 C -0.258 4.258 20 H 0.072 0.928 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.295 1.295 26 H -0.292 1.292 27 C -0.135 4.135 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.003 0.997 48 H 0.011 0.989 49 H 0.020 0.980 50 H 0.246 0.754 51 H 0.046 0.954 52 H 0.062 0.938 53 H 0.110 0.890 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 1.809 21.772 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.078 4.078 9 H 0.078 0.922 10 C -0.172 4.172 11 C 0.300 3.700 12 O -0.460 6.460 13 N -0.343 5.343 14 C -0.001 4.001 15 C -0.172 4.172 16 C 0.067 3.933 17 N -0.334 5.334 18 C 0.039 3.961 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.586 5.586 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.219 1.219 27 C -0.175 4.175 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.021 0.979 48 H 0.030 0.970 49 H 0.038 0.962 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.081 0.919 53 H 0.128 0.872 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.115 1.319 21.747 24.021 hybrid contribution -0.606 -0.145 -1.564 1.684 sum 9.508 1.173 20.183 22.342 Atomic orbital electron populations 1.22009 0.94865 1.02049 1.02202 1.21115 0.96269 0.99220 0.93444 0.90126 1.21546 1.00365 0.95439 0.97624 1.21568 1.01067 0.95872 0.97083 1.21477 1.00210 0.98749 0.94900 1.21672 1.00131 0.95854 0.98068 1.20843 0.99675 0.94438 0.92813 0.92229 1.21897 1.02518 1.01910 0.90913 1.21319 0.80687 0.82806 0.85217 1.90624 1.38496 1.30179 1.86731 1.48303 1.46273 1.33959 1.05779 1.21456 0.94989 0.98939 0.84747 1.22321 0.97099 0.99082 0.98744 1.20565 0.88885 0.94597 0.89234 1.44184 1.31835 1.40819 1.16592 1.20384 0.90721 0.89029 0.95925 1.19593 0.93798 1.29293 0.96107 0.91072 1.25769 0.95063 1.01591 1.02546 1.70238 0.97776 1.54126 1.36490 0.85205 0.77753 0.77002 0.80495 1.19038 1.22242 1.21892 1.22280 0.98002 1.00914 0.96345 1.21863 0.89752 0.87785 1.01138 0.92637 0.91960 0.92192 0.92395 0.90838 0.91689 0.91498 0.92984 0.92560 0.92171 0.93227 0.86538 0.87648 0.90296 0.90419 0.91727 0.93644 0.91964 0.97901 0.96970 0.96198 0.94444 0.93510 0.91900 0.87187 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.15 71.98 0.59 -1.39 16 2 C -0.08 -1.12 2.72 -10.79 -0.03 -1.15 16 3 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 4 C -0.11 -1.47 5.45 30.59 0.17 -1.31 16 5 C -0.12 -1.71 5.65 30.59 0.17 -1.54 16 6 C -0.12 -2.16 5.92 30.60 0.18 -1.98 16 7 C -0.12 -2.58 4.67 30.59 0.14 -2.44 16 8 C -0.06 -1.09 1.61 -10.79 -0.02 -1.11 16 9 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16 10 C -0.13 -2.41 3.02 29.85 0.09 -2.32 16 11 C 0.51 13.35 7.42 87.66 0.65 14.00 16 12 O -0.58 -19.23 13.38 -3.04 -0.04 -19.27 16 13 N -0.61 -15.83 2.97 -819.01 -2.44 -18.26 16 14 C 0.12 3.46 6.42 86.36 0.55 4.02 16 15 C -0.13 -4.48 5.35 30.77 0.16 -4.32 16 16 C 0.17 6.60 2.55 45.12 0.12 6.71 16 17 N -0.61 -29.95 2.81 -702.04 -1.97 -31.93 16 18 C 0.18 9.23 8.03 127.77 1.03 10.26 16 19 C -0.26 -13.88 9.59 84.03 0.81 -13.07 16 20 H 0.07 3.71 7.82 -2.91 -0.02 3.68 16 21 C -0.05 -3.05 5.12 84.86 0.43 -2.62 16 22 N -0.94 -55.32 10.64 21.65 0.23 -55.09 16 23 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 C -0.14 -4.35 5.34 30.65 0.16 -4.18 16 28 C 0.12 2.65 6.34 86.34 0.55 3.19 16 29 H 0.05 0.80 4.81 -2.39 -0.01 0.79 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.74 6.55 -2.38 -0.02 0.72 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.24 6.43 -2.39 -0.02 1.23 16 39 H 0.05 1.40 5.95 -2.38 -0.01 1.38 16 40 H 0.12 1.53 7.94 -2.39 -0.02 1.51 16 41 H 0.11 1.74 6.26 -2.39 -0.01 1.72 16 42 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.04 1.66 6.73 -2.38 -0.02 1.65 16 46 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 47 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 48 H 0.01 0.64 7.22 -2.39 -0.02 0.62 16 49 H 0.02 0.88 6.47 -2.39 -0.02 0.86 16 50 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 51 H 0.05 1.62 7.72 -2.39 -0.02 1.60 16 52 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 53 H 0.11 1.82 5.93 -2.39 -0.01 1.81 16 54 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.19 388.41 4.42 -61.77 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.85 Total: 15.20 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.76 Total: 0.77 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.18 Total: -105.28 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.19 4.42 -61.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985812583.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.876 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds