Wall clock time and date at job start Tue Mar 31 2020 15:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47063 * 2 1 4 4 C 1.53001 * 109.47048 * 239.99989 * 2 1 3 5 5 C 1.53004 * 109.47299 * 299.99763 * 4 2 1 6 6 C 1.52999 * 109.47006 * 300.00532 * 5 4 2 7 7 C 1.52993 * 109.47526 * 59.99833 * 6 5 4 8 8 C 1.52999 * 109.47215 * 299.99782 * 7 6 5 9 9 H 1.08998 * 109.47063 * 300.00347 * 8 7 6 10 10 C 1.53000 * 109.47621 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.46697 * 65.00026 * 10 8 7 12 12 O 1.21280 * 120.00152 * 0.02562 * 11 10 8 13 13 N 1.34771 * 119.99679 * 180.02562 * 11 10 8 14 14 C 1.46936 * 120.63019 * 180.02562 * 13 11 10 15 15 C 1.53197 * 108.77360 * 233.58852 * 14 13 11 16 16 C 1.53045 * 109.31050 * 305.36083 * 15 14 13 17 17 N 1.46498 * 109.45809 * 181.39078 * 16 15 14 18 18 C 1.46500 * 119.99702 * 299.97018 * 17 16 15 19 19 C 1.36934 * 120.00274 * 119.69895 * 17 16 15 20 20 H 1.08001 * 119.99487 * 23.16005 * 19 17 16 21 21 C 1.38811 * 120.00202 * 203.15774 * 19 17 16 22 22 N 1.31622 * 119.99541 * 13.03878 * 21 19 17 23 23 Si 1.86794 * 120.00144 * 193.03052 * 21 19 17 24 24 H 1.48503 * 109.46962 * 60.00374 * 23 21 19 25 25 H 1.48498 * 109.47166 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47481 * 300.00406 * 23 21 19 27 27 C 1.53044 * 109.52719 * 61.37615 * 16 15 14 28 28 C 1.46927 * 120.63258 * 359.97438 * 13 11 10 29 29 H 1.08996 * 109.47308 * 299.99772 * 1 2 3 30 30 H 1.09001 * 109.47003 * 59.99925 * 1 2 3 31 31 H 1.09003 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47285 * 60.00113 * 4 2 1 33 33 H 1.09002 * 109.47096 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46491 * 60.00310 * 5 4 2 35 35 H 1.08996 * 109.46974 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.46922 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.46844 * 299.99430 * 6 5 4 38 38 H 1.09001 * 109.47148 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47281 * 59.99420 * 7 6 5 40 40 H 1.09001 * 109.47044 * 305.00501 * 10 8 7 41 41 H 1.08995 * 109.47219 * 184.99835 * 10 8 7 42 42 H 1.08991 * 109.58462 * 113.79574 * 14 13 11 43 43 H 1.09002 * 109.70107 * 353.43809 * 14 13 11 44 44 H 1.08993 * 109.49372 * 185.41296 * 15 14 13 45 45 H 1.08999 * 109.50037 * 65.31067 * 15 14 13 46 46 H 1.08997 * 109.46066 * 301.36280 * 16 15 14 47 47 H 1.08994 * 109.47274 * 95.13260 * 18 17 16 48 48 H 1.09003 * 109.46997 * 215.13072 * 18 17 16 49 49 H 1.09002 * 109.47749 * 335.13087 * 18 17 16 50 50 H 0.97003 * 119.99643 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.49806 * 58.57529 * 27 16 15 52 52 H 1.08994 * 109.49661 * 178.67681 * 27 16 15 53 53 H 1.09000 * 109.58567 * 246.19971 * 28 13 11 54 54 H 1.08995 * 109.58610 * 6.48708 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2493 9 1 3.1300 -0.7213 1.2493 10 6 1.5295 0.0002 2.4982 11 6 2.1299 -0.6350 3.7259 12 8 2.8915 -1.5721 3.6130 13 7 1.8205 -0.1616 4.9492 14 6 2.3983 -0.7700 6.1555 15 6 1.2610 -1.1515 7.1083 16 6 0.3933 0.0797 7.3793 17 7 -0.6760 -0.2735 8.3164 18 6 -1.6425 -1.3169 7.9653 19 6 -0.7687 0.3678 9.5227 20 1 -0.3316 1.3474 9.6485 21 6 -1.4245 -0.2411 10.5839 22 7 -1.7305 -1.5197 10.5219 23 14 -1.8726 0.7542 12.0998 24 1 -2.7752 1.8678 11.7118 25 1 -2.5607 -0.1220 13.0816 26 1 -0.6379 1.3079 12.7113 27 6 -0.2210 0.5716 6.0667 28 6 0.9000 0.9732 5.1020 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.4400 -2.1637 -1.2493 35 1 1.8938 -2.6777 -2.1390 36 1 1.6763 -3.9126 0.0003 37 1 3.1300 -2.8850 0.0000 38 1 1.8930 -2.6779 2.1392 39 1 0.4400 -2.1637 1.2492 40 1 0.4431 -0.0768 2.5437 41 1 1.8179 1.0504 2.4545 42 1 3.0602 -0.0551 6.6440 43 1 2.9616 -1.6626 5.8831 44 1 1.6794 -1.5154 8.0467 45 1 0.6520 -1.9328 6.6537 46 1 1.0082 0.8695 7.8109 47 1 -1.3180 -2.2689 8.3853 48 1 -2.6210 -1.0565 8.3689 49 1 -1.7078 -1.4018 6.8806 50 1 -2.1891 -1.9451 11.2633 51 1 -0.8158 -0.2262 5.6219 52 1 -0.8575 1.4342 6.2636 53 1 1.4400 1.8300 5.5050 54 1 0.4751 1.2322 4.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985812584.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:32 Heat of formation + Delta-G solvation = -57.187159 kcal Electronic energy + Delta-G solvation = -28997.272354 eV Core-core repulsion = 25353.657039 eV Total energy + Delta-G solvation = -3643.615315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.48145 -40.02056 -38.73841 -36.65747 -34.11665 -33.65184 -32.59508 -31.95913 -31.44316 -28.81280 -28.03270 -27.15616 -26.09040 -24.13970 -23.84097 -23.13195 -22.40740 -21.00687 -19.63286 -19.27656 -18.75171 -18.06580 -17.02614 -16.82646 -16.55575 -16.41600 -15.74012 -15.50000 -15.19486 -15.13938 -14.99387 -14.86041 -14.50356 -14.30875 -13.89287 -13.81393 -13.73608 -13.41873 -13.18548 -13.11817 -13.09384 -12.78358 -12.65371 -12.55551 -12.38970 -12.33347 -12.22276 -12.15346 -12.07782 -11.87445 -11.80889 -11.61422 -11.56599 -11.23139 -11.07642 -10.98143 -10.75913 -10.60946 -10.44438 -9.58643 -8.75781 -7.80165 -5.29153 1.47360 1.49383 1.55928 1.71129 2.09339 2.52017 3.32402 3.54332 3.65081 3.74761 3.83459 3.91214 3.99238 4.15038 4.21476 4.27231 4.32016 4.35156 4.40722 4.44742 4.53626 4.54902 4.58764 4.60817 4.70489 4.77663 4.81508 4.82693 4.84457 4.87779 4.92241 4.95723 5.02076 5.07586 5.11350 5.15523 5.24483 5.25056 5.25376 5.32235 5.36933 5.39177 5.46757 5.51585 5.53982 5.62363 5.64008 5.68448 5.72603 5.75035 6.34874 6.52882 7.16779 7.26713 7.90076 8.34921 9.22372 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.002527 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.697540 B =11078.071572 C =11160.265641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.059 4.059 9 H 0.057 0.943 10 C -0.131 4.131 11 C 0.507 3.493 12 O -0.582 6.582 13 N -0.610 5.610 14 C 0.124 3.876 15 C -0.131 4.131 16 C 0.173 3.827 17 N -0.611 5.611 18 C 0.183 3.817 19 C -0.260 4.260 20 H 0.074 0.926 21 C -0.057 4.057 22 N -0.942 5.942 23 Si 0.969 3.031 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.275 1.275 27 C -0.136 4.136 28 C 0.116 3.884 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.039 0.961 46 H 0.062 0.938 47 H -0.004 1.004 48 H 0.012 0.988 49 H 0.026 0.974 50 H 0.246 0.754 51 H 0.052 0.948 52 H 0.078 0.922 53 H 0.086 0.914 54 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 6.328 -24.437 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.078 4.078 9 H 0.076 0.924 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.463 6.463 13 N -0.343 5.343 14 C 0.000 4.000 15 C -0.172 4.172 16 C 0.067 3.933 17 N -0.333 5.333 18 C 0.038 3.962 19 C -0.390 4.390 20 H 0.092 0.908 21 C -0.252 4.252 22 N -0.589 5.589 23 Si 0.797 3.203 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.201 1.201 27 C -0.176 4.176 28 C -0.007 4.007 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.015 0.985 48 H 0.031 0.969 49 H 0.045 0.955 50 H 0.055 0.945 51 H 0.071 0.929 52 H 0.096 0.904 53 H 0.104 0.896 54 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.218 5.758 -24.366 25.797 hybrid contribution -0.347 -0.423 1.703 1.788 sum 5.871 5.336 -22.663 24.011 Atomic orbital electron populations 1.22009 0.94720 1.02058 1.02312 1.21114 0.96387 0.99205 0.93294 0.90030 1.21551 1.00317 0.95422 0.97731 1.21567 1.01109 0.95894 0.96984 1.21478 1.00149 0.98761 0.95009 1.21671 1.00205 0.95915 0.97951 1.20849 0.99614 0.94410 0.92970 0.92412 1.21900 1.02639 1.01915 0.90594 1.21400 0.80704 0.82805 0.85288 1.90629 1.38549 1.30354 1.86769 1.48311 1.46425 1.34022 1.05558 1.21413 0.94938 0.98772 0.84870 1.22284 0.97356 0.99544 0.97977 1.20533 0.88484 0.94463 0.89852 1.44209 1.29652 1.43249 1.16199 1.20390 0.91569 0.90804 0.93433 1.19562 1.32676 0.98217 0.88559 0.90780 1.25821 1.02653 0.96208 1.00507 1.70250 1.45851 1.10350 1.32400 0.85316 0.78131 0.77670 0.79173 1.20268 1.22532 1.20105 1.22302 0.98226 1.01415 0.95659 1.21934 0.89745 0.87631 1.01373 0.91943 0.91944 0.92688 0.90771 0.92519 0.91395 0.91763 0.92640 0.93117 0.93425 0.92003 0.87322 0.86323 0.90436 0.90913 0.93343 0.94194 0.91977 0.98541 0.96911 0.95517 0.94493 0.92940 0.90387 0.89576 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.15 71.98 0.59 -1.21 16 2 C -0.08 -1.05 2.72 -10.79 -0.03 -1.08 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.44 5.45 30.60 0.17 -1.27 16 5 C -0.12 -1.68 5.65 30.60 0.17 -1.51 16 6 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 7 C -0.12 -2.58 4.67 30.59 0.14 -2.43 16 8 C -0.06 -1.08 1.61 -10.79 -0.02 -1.10 16 9 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 10 C -0.13 -2.25 3.02 29.85 0.09 -2.16 16 11 C 0.51 13.31 7.41 87.66 0.65 13.96 16 12 O -0.58 -19.79 13.38 -3.03 -0.04 -19.83 16 13 N -0.61 -15.82 2.97 -818.79 -2.43 -18.25 16 14 C 0.12 3.74 6.43 86.36 0.56 4.30 16 15 C -0.13 -4.86 5.34 30.68 0.16 -4.69 16 16 C 0.17 6.58 2.55 45.02 0.11 6.69 16 17 N -0.61 -29.91 2.81 -702.62 -1.97 -31.88 16 18 C 0.18 9.16 8.03 127.77 1.03 10.19 16 19 C -0.26 -14.01 9.59 84.03 0.81 -13.20 16 20 H 0.07 3.81 7.82 -2.91 -0.02 3.78 16 21 C -0.06 -3.20 5.10 84.86 0.43 -2.77 16 22 N -0.94 -56.42 10.70 21.65 0.23 -56.19 16 23 Si 0.97 44.88 29.57 68.60 2.03 46.91 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 C -0.14 -3.95 5.32 30.69 0.16 -3.79 16 28 C 0.12 2.39 6.35 86.38 0.55 2.94 16 29 H 0.06 0.66 6.54 -2.39 -0.02 0.64 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.74 4.81 -2.39 -0.01 0.72 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.36 5.96 -2.39 -0.01 1.35 16 39 H 0.06 1.25 6.43 -2.39 -0.02 1.23 16 40 H 0.11 1.61 6.26 -2.39 -0.01 1.60 16 41 H 0.12 1.41 7.94 -2.39 -0.02 1.39 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.40 7.01 -2.39 -0.02 2.38 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 46 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 47 H 0.00 -0.21 7.32 -2.39 -0.02 -0.23 16 48 H 0.01 0.67 7.35 -2.39 -0.02 0.65 16 49 H 0.03 1.15 6.47 -2.39 -0.02 1.13 16 50 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 51 H 0.05 1.63 6.72 -2.39 -0.02 1.61 16 52 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 54 H 0.12 1.60 5.93 -2.39 -0.01 1.58 16 Total: -1.00 -68.21 388.47 4.42 -63.79 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.85 Total: 14.60 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.75 Total: 0.86 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.18 Total: -106.32 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.04 Total: -19.83 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.21 4.42 -63.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985812584.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.599 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds