Wall clock time and date at job start Tue Mar 31 2020 15:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46943 * 2 1 4 4 C 1.52999 * 109.47823 * 120.00922 * 2 1 3 5 5 C 1.53001 * 109.47295 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46841 * 299.99685 * 5 4 2 7 7 C 1.53003 * 109.47322 * 60.00419 * 6 5 4 8 8 C 1.53001 * 109.46820 * 299.99594 * 7 6 5 9 9 H 1.09002 * 109.47210 * 299.99874 * 8 7 6 10 10 C 1.52998 * 109.47122 * 180.02562 * 8 7 6 11 11 C 1.50693 * 109.47308 * 64.99715 * 10 8 7 12 12 O 1.21289 * 119.99807 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00165 * 179.97438 * 11 10 8 14 14 C 1.46924 * 120.62908 * 180.02562 * 13 11 10 15 15 C 1.53194 * 108.77860 * 233.58940 * 14 13 11 16 16 C 1.53040 * 109.31053 * 305.36641 * 15 14 13 17 17 N 1.46503 * 109.45983 * 181.38167 * 16 15 14 18 18 C 1.46504 * 119.99921 * 299.99905 * 17 16 15 19 19 C 1.36938 * 119.99762 * 120.00224 * 17 16 15 20 20 H 1.07995 * 120.00045 * 41.31385 * 19 17 16 21 21 C 1.38810 * 119.99906 * 221.31078 * 19 17 16 22 22 N 1.31616 * 120.00177 * 202.84415 * 21 19 17 23 23 Si 1.86802 * 119.99761 * 22.84608 * 21 19 17 24 24 H 1.48498 * 109.47409 * 264.38982 * 23 21 19 25 25 H 1.48501 * 109.47310 * 24.38789 * 23 21 19 26 26 H 1.48503 * 109.47017 * 144.38863 * 23 21 19 27 27 C 1.53049 * 109.53774 * 61.36493 * 16 15 14 28 28 C 1.46920 * 120.63022 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.46583 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46708 * 299.98880 * 1 2 3 31 31 H 1.08994 * 109.47186 * 59.99447 * 1 2 3 32 32 H 1.09007 * 109.46492 * 300.00169 * 4 2 1 33 33 H 1.08996 * 109.47100 * 59.99391 * 4 2 1 34 34 H 1.09000 * 109.46873 * 59.99500 * 5 4 2 35 35 H 1.08994 * 109.46657 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.46868 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47236 * 299.99593 * 6 5 4 38 38 H 1.08995 * 109.46905 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47126 * 59.99519 * 7 6 5 40 40 H 1.09007 * 109.46974 * 305.00188 * 10 8 7 41 41 H 1.08999 * 109.47333 * 185.00412 * 10 8 7 42 42 H 1.09000 * 109.58547 * 113.80414 * 14 13 11 43 43 H 1.09000 * 109.59136 * 353.37798 * 14 13 11 44 44 H 1.08997 * 109.49980 * 185.41878 * 15 14 13 45 45 H 1.08998 * 109.49611 * 65.31524 * 15 14 13 46 46 H 1.08997 * 109.46677 * 301.35675 * 16 15 14 47 47 H 1.08997 * 109.47334 * 274.45432 * 18 17 16 48 48 H 1.09000 * 109.46742 * 34.46385 * 18 17 16 49 49 H 1.09003 * 109.46490 * 154.45482 * 18 17 16 50 50 H 0.96998 * 119.99976 * 180.02562 * 22 21 19 51 51 H 1.08998 * 109.49654 * 58.58560 * 27 16 15 52 52 H 1.08998 * 109.49584 * 178.68435 * 27 16 15 53 53 H 1.09006 * 109.58283 * 246.19556 * 28 13 11 54 54 H 1.08998 * 109.59013 * 6.61836 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0402 -0.7214 1.2491 5 6 3.5702 -0.7208 1.2493 6 6 4.0806 -1.4415 -0.0001 7 6 3.5705 -0.7201 -1.2493 8 6 2.0405 -0.7207 -1.2495 9 1 1.6776 -1.7486 -1.2498 10 6 1.5304 0.0001 -2.4989 11 6 1.9296 -0.7782 -3.7260 12 8 2.5597 -1.8083 -3.6124 13 7 1.5855 -0.3301 -4.9497 14 6 1.9670 -1.0781 -6.1553 15 6 2.7045 -0.1331 -7.1092 16 6 1.8316 1.0942 -7.3810 17 7 2.5198 1.9846 -8.3189 18 6 3.8255 2.5492 -7.9689 19 6 1.9425 2.2891 -9.5228 20 1 0.8834 2.4932 -9.5775 21 6 2.7186 2.3355 -10.6727 22 7 2.3154 3.0365 -11.7111 23 14 4.3355 1.4028 -10.7464 24 1 5.4515 2.3184 -10.3981 25 1 4.3009 0.2750 -9.7809 26 1 4.5394 0.8735 -12.1188 27 6 1.5719 1.8382 -6.0689 28 6 0.8210 0.9151 -5.1032 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6768 -0.2077 2.1392 33 1 1.6768 -1.7490 1.2490 34 1 3.9331 0.3070 1.2495 35 1 3.9335 -1.2343 2.1393 36 1 5.1706 -1.4415 0.0003 37 1 3.7177 -2.4693 -0.0004 38 1 3.9345 -1.2333 -2.1393 39 1 3.9334 0.3077 -1.2489 40 1 1.9647 0.9989 -2.5449 41 1 0.4440 0.0779 -2.4554 42 1 1.0726 -1.4652 -6.6434 43 1 2.6225 -1.9045 -5.8805 44 1 2.9083 -0.6494 -8.0473 45 1 3.6439 0.1819 -6.6551 46 1 0.8822 0.7765 -7.8120 47 1 3.6835 3.4589 -7.3855 48 1 4.3889 1.8246 -7.3810 49 1 4.3757 2.7842 -8.8801 50 1 2.8575 3.0686 -12.5147 51 1 2.5220 2.1347 -5.6247 52 1 0.9697 2.7249 -6.2666 53 1 -0.1667 0.6900 -5.5058 54 1 0.7201 1.4039 -4.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985812586.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:36 Heat of formation + Delta-G solvation = -61.096417 kcal Electronic energy + Delta-G solvation = -28998.385269 eV Core-core repulsion = 25354.600436 eV Total energy + Delta-G solvation = -3643.784833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.45479 -39.87149 -38.74726 -36.72440 -34.25889 -33.93164 -33.01657 -32.14088 -31.88618 -28.74047 -28.04086 -26.96488 -26.23172 -24.20905 -23.78968 -22.84269 -21.90038 -21.04694 -20.52586 -19.65278 -18.90918 -18.09514 -17.28362 -16.86098 -16.47801 -16.08669 -15.83551 -15.43229 -15.26337 -15.18588 -14.98019 -14.88898 -14.79470 -14.43927 -14.24852 -14.20659 -13.80682 -13.55054 -13.33993 -13.25044 -13.13928 -12.87222 -12.66346 -12.57691 -12.49987 -12.35660 -12.26822 -12.12640 -12.10066 -11.90921 -11.81591 -11.67829 -11.51311 -11.29792 -11.25961 -11.06383 -10.78211 -10.63448 -10.44509 -9.60370 -8.68017 -8.23061 -5.63065 1.28835 1.39169 1.50340 1.69926 2.07386 2.40346 3.03802 3.32361 3.55979 3.72666 3.81908 3.88759 3.97388 4.11669 4.17736 4.20068 4.27800 4.32848 4.36402 4.42920 4.51421 4.54782 4.58871 4.60055 4.64816 4.68659 4.76339 4.79659 4.81901 4.83381 4.84526 4.88621 4.93168 4.99119 5.01323 5.02825 5.09754 5.11424 5.24885 5.26521 5.31655 5.34938 5.36860 5.42885 5.45413 5.53629 5.58156 5.65305 5.70179 5.94618 6.19662 6.50946 7.00104 7.25304 7.61836 8.07782 8.96382 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.002732 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.773096 B =10247.685375 C =10589.315100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.059 4.059 9 H 0.056 0.944 10 C -0.134 4.134 11 C 0.509 3.491 12 O -0.581 6.581 13 N -0.610 5.610 14 C 0.122 3.878 15 C -0.139 4.139 16 C 0.171 3.829 17 N -0.616 5.616 18 C 0.113 3.887 19 C -0.257 4.257 20 H 0.044 0.956 21 C -0.015 4.015 22 N -0.945 5.945 23 Si 0.937 3.063 24 H -0.279 1.279 25 H -0.258 1.258 26 H -0.309 1.309 27 C -0.135 4.135 28 C 0.114 3.886 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.047 0.953 49 H 0.026 0.974 50 H 0.263 0.737 51 H 0.059 0.941 52 H 0.075 0.925 53 H 0.082 0.918 54 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -5.858 27.906 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.078 4.078 9 H 0.075 0.925 10 C -0.173 4.173 11 C 0.300 3.700 12 O -0.462 6.462 13 N -0.343 5.343 14 C -0.001 4.001 15 C -0.180 4.180 16 C 0.065 3.935 17 N -0.340 5.340 18 C -0.032 4.032 19 C -0.387 4.387 20 H 0.062 0.938 21 C -0.212 4.212 22 N -0.589 5.589 23 Si 0.766 3.234 24 H -0.206 1.206 25 H -0.182 1.182 26 H -0.237 1.237 27 C -0.175 4.175 28 C -0.008 4.008 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.044 0.956 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.093 0.907 53 H 0.101 0.899 54 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.266 -6.332 27.804 28.605 hybrid contribution 1.050 -0.388 -1.274 1.696 sum -1.216 -6.720 26.529 27.394 Atomic orbital electron populations 1.21922 0.94450 1.01861 1.02578 1.21141 0.96015 0.99568 0.93367 0.90409 1.21578 0.95169 1.00524 0.97702 1.21533 0.96029 1.00742 0.97138 1.21486 0.99928 0.99082 0.94954 1.21653 0.95622 1.00301 0.98099 1.20869 0.95079 0.98908 0.92921 0.92506 1.21926 1.04436 1.00263 0.90656 1.21353 0.78101 0.85365 0.85211 1.90633 1.41999 1.26836 1.86731 1.48301 1.55166 1.25254 1.05582 1.21423 0.99671 0.94207 0.84844 1.22342 0.99520 0.97633 0.98458 1.20628 0.94596 0.88500 0.89728 1.44213 1.20248 1.53012 1.16546 1.21276 0.87113 0.96803 0.97969 1.18656 0.94177 1.41472 0.84421 0.93798 1.26154 1.01547 0.98411 0.95108 1.69995 1.41483 1.41060 1.06340 0.85929 0.81023 0.80610 0.75849 1.20623 1.18203 1.23719 1.22271 1.00942 0.98872 0.95379 1.21932 0.94444 0.83013 1.01426 0.93213 0.91795 0.91543 0.90823 0.92638 0.91666 0.91608 0.92466 0.93133 0.93086 0.92214 0.87276 0.86347 0.90644 0.90563 0.92768 0.92914 0.92072 0.95463 0.93430 0.95575 0.92815 0.92205 0.90686 0.89931 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.85 71.98 0.64 -0.91 16 2 C -0.08 -1.02 2.25 -10.79 -0.02 -1.04 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.38 5.20 30.59 0.16 -1.22 16 5 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 6 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 7 C -0.12 -2.40 4.94 30.60 0.15 -2.25 16 8 C -0.06 -1.02 1.36 -10.79 -0.01 -1.03 16 9 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 10 C -0.13 -2.15 3.31 29.85 0.10 -2.05 16 11 C 0.51 12.56 7.41 87.66 0.65 13.21 16 12 O -0.58 -18.76 13.38 -3.06 -0.04 -18.81 16 13 N -0.61 -14.82 2.97 -818.80 -2.43 -17.26 16 14 C 0.12 3.45 6.43 86.36 0.56 4.00 16 15 C -0.14 -4.67 5.30 30.67 0.16 -4.51 16 16 C 0.17 6.13 2.56 45.02 0.12 6.25 16 17 N -0.62 -27.83 2.29 -702.61 -1.61 -29.44 16 18 C 0.11 4.69 8.50 127.77 1.09 5.78 16 19 C -0.26 -14.21 9.78 84.03 0.82 -13.39 16 20 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 21 C -0.02 -0.87 5.23 84.86 0.44 -0.43 16 22 N -0.95 -58.47 13.97 21.65 0.30 -58.17 16 23 Si 0.94 46.17 25.29 68.60 1.73 47.90 16 24 H -0.28 -13.26 6.73 99.48 0.67 -12.59 16 25 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 27 C -0.13 -3.66 5.34 30.69 0.16 -3.50 16 28 C 0.11 2.24 6.34 86.38 0.55 2.79 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.57 6.32 -2.39 -0.02 0.56 16 32 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.37 5.95 -2.39 -0.01 1.35 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 1.45 7.69 -2.38 -0.02 1.43 16 41 H 0.12 1.38 5.98 -2.39 -0.01 1.36 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 2.33 7.01 -2.39 -0.02 2.31 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.05 1.81 6.75 -2.39 -0.02 1.80 16 46 H 0.06 2.31 7.89 -2.39 -0.02 2.29 16 47 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 1.76 6.47 -2.39 -0.02 1.75 16 49 H 0.03 1.19 4.06 -2.39 -0.01 1.18 16 50 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 51 H 0.06 1.64 7.72 -2.39 -0.02 1.63 16 52 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 54 H 0.12 1.50 5.93 -2.39 -0.01 1.48 16 Total: -1.00 -68.65 391.73 4.68 -63.97 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.81 Total: 13.36 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.92 Total: -1.56 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -3.74 Total: -104.87 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.04 Total: -18.81 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.73 Total: 47.90 kcal Total: -68.65 4.68 -63.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985812586.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.876 kcal (2) G-P(sol) polarization free energy of solvation -68.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds