Wall clock time and date at job start Tue Mar 31 2020 15:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.43630 * 2 1 4 4 C 1.54893 * 110.48337 * 122.53601 * 2 1 3 5 5 C 1.54893 * 102.74882 * 156.61758 * 4 2 1 6 6 C 1.54260 * 104.19663 * 322.05982 * 5 4 2 7 7 C 1.53006 * 110.03468 * 142.93853 * 6 5 4 8 8 C 1.50699 * 110.03458 * 264.32064 * 6 5 4 9 9 O 1.21281 * 120.00015 * 128.64291 * 8 6 5 10 10 N 1.34774 * 119.99783 * 308.64910 * 8 6 5 11 11 C 1.46927 * 120.62703 * 173.68571 * 10 8 6 12 12 C 1.53188 * 108.77575 * 233.58390 * 11 10 8 13 13 C 1.53042 * 109.31713 * 305.36761 * 12 11 10 14 14 N 1.46499 * 109.46534 * 181.38085 * 13 12 11 15 15 C 1.36936 * 119.99556 * 154.99460 * 14 13 12 16 16 H 1.07993 * 120.00589 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99191 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00657 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99657 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47242 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47283 * 240.00532 * 19 17 15 22 22 H 1.48502 * 109.47214 * 120.00113 * 19 17 15 23 23 C 1.53041 * 109.53536 * 61.35938 * 13 12 11 24 24 C 1.46926 * 120.63173 * 353.66271 * 10 8 6 25 25 C 1.53883 * 106.59874 * 23.60748 * 6 5 4 26 26 C 1.53000 * 110.03222 * 119.28327 * 25 6 5 27 27 C 1.53000 * 110.03121 * 240.71510 * 25 6 5 28 28 H 1.09002 * 109.46712 * 298.91592 * 1 2 3 29 29 H 1.08997 * 109.46648 * 58.91442 * 1 2 3 30 30 H 1.08995 * 109.46808 * 178.91725 * 1 2 3 31 31 H 1.09004 * 110.75872 * 38.30633 * 4 2 1 32 32 H 1.09000 * 110.75855 * 274.93361 * 4 2 1 33 33 H 1.09000 * 110.48806 * 203.37559 * 5 4 2 34 34 H 1.09001 * 110.48081 * 80.73825 * 5 4 2 35 35 H 1.08999 * 109.47419 * 187.05363 * 7 6 5 36 36 H 1.09000 * 109.46749 * 307.05709 * 7 6 5 37 37 H 1.09000 * 109.46703 * 67.04866 * 7 6 5 38 38 H 1.09006 * 109.58598 * 113.79987 * 11 10 8 39 39 H 1.08997 * 109.70814 * 353.43976 * 11 10 8 40 40 H 1.08997 * 109.50141 * 185.41523 * 12 11 10 41 41 H 1.09003 * 109.49889 * 65.31814 * 12 11 10 42 42 H 1.09000 * 109.45662 * 301.36035 * 13 12 11 43 43 H 0.96992 * 119.99978 * 335.00982 * 14 13 12 44 44 H 0.97004 * 119.99243 * 359.97438 * 18 17 15 45 45 H 1.09008 * 109.49656 * 58.59600 * 23 13 12 46 46 H 1.09001 * 109.50134 * 178.68495 * 23 13 12 47 47 H 1.08994 * 109.58488 * 246.19961 * 24 10 8 48 48 H 1.08996 * 109.58584 * 6.62549 * 24 10 8 49 49 H 1.09010 * 109.46924 * 60.00021 * 26 25 6 50 50 H 1.08992 * 109.47314 * 179.97438 * 26 25 6 51 51 H 1.09002 * 109.47226 * 300.00348 * 26 25 6 52 52 H 1.08993 * 109.47091 * 55.56871 * 27 25 6 53 53 H 1.08998 * 109.47019 * 175.57230 * 27 25 6 54 54 H 1.09006 * 109.46924 * 295.56938 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 1.2233 5 6 3.4907 -1.1971 0.7617 6 6 3.3166 -1.5416 -0.7319 7 6 4.5471 -1.0897 -1.5209 8 6 3.1129 -3.0254 -0.8991 9 8 2.1737 -3.4395 -1.5451 10 7 3.9743 -3.8921 -0.3306 11 6 3.7148 -5.3378 -0.3669 12 6 3.7729 -5.8852 1.0626 13 6 5.1120 -5.5027 1.6972 14 7 5.1845 -6.0528 3.0530 15 6 6.4028 -6.3020 3.6265 16 1 7.3101 -6.0927 3.0794 17 6 6.4715 -6.8237 4.9110 18 7 5.3658 -7.0793 5.5776 19 14 8.1334 -7.1631 5.6936 20 1 9.2129 -6.7916 4.7439 21 1 8.2394 -8.6069 6.0240 22 1 8.2691 -6.3598 6.9353 23 6 5.2325 -3.9783 1.7583 24 6 5.1910 -3.4092 0.3366 25 6 2.0699 -0.7805 -1.2161 26 6 2.4508 0.1909 -2.3352 27 6 1.0139 -1.7685 -1.7157 28 1 -0.3633 0.4969 0.8996 29 1 -0.3632 0.5306 -0.8801 30 1 -0.3633 -1.0274 -0.0194 31 1 1.4580 -1.6582 1.4245 32 1 2.1252 -0.1354 2.1004 33 1 3.8315 -2.0706 1.3175 34 1 4.1898 -0.3697 0.8834 35 1 4.3639 -1.2223 -2.5872 36 1 4.7451 -0.0380 -1.3142 37 1 5.4090 -1.6870 -1.2233 38 1 4.4720 -5.8297 -0.9776 39 1 2.7274 -5.5235 -0.7894 40 1 3.6776 -6.9708 1.0407 41 1 2.9580 -5.4598 1.6485 42 1 5.9269 -5.9074 1.0970 43 1 4.3697 -6.2407 3.5444 44 1 4.5028 -6.9028 5.1712 45 1 4.4039 -3.5708 2.3377 46 1 6.1761 -3.7066 2.2315 47 1 6.0685 -3.7439 -0.2166 48 1 5.1767 -2.3202 0.3792 49 1 2.8776 -0.3656 -3.1698 50 1 1.5618 0.7244 -2.6714 51 1 3.1844 0.9055 -1.9620 52 1 0.7889 -2.4884 -0.9290 53 1 0.1067 -1.2265 -1.9826 54 1 1.3939 -2.2943 -2.5917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997056984.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:19 Heat of formation + Delta-G solvation = -8.878158 kcal Electronic energy + Delta-G solvation = -30335.955478 eV Core-core repulsion = 26694.434999 eV Total energy + Delta-G solvation = -3641.520479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.65208 -39.90871 -38.53086 -36.65576 -34.73534 -33.61336 -33.07236 -31.88908 -30.77902 -28.97994 -28.32627 -26.68566 -25.36270 -24.79209 -24.22922 -24.09684 -22.35966 -21.49793 -20.20226 -19.33037 -19.09462 -17.66469 -17.02987 -16.91751 -16.62841 -16.04048 -15.89676 -15.69584 -15.40935 -15.18413 -15.12568 -14.83677 -14.49671 -14.25988 -14.17085 -14.01704 -13.88579 -13.38797 -13.36317 -13.18828 -12.81048 -12.75410 -12.70708 -12.49849 -12.27969 -12.23803 -12.13104 -12.01845 -11.85114 -11.74574 -11.69556 -11.58588 -11.42441 -11.30276 -11.18977 -11.14572 -11.00957 -10.88904 -9.71477 -9.51270 -9.11902 -8.37858 -5.32180 1.58932 1.61930 1.70224 1.81397 2.01674 2.71660 3.33527 3.41494 3.43476 3.57721 3.63573 3.80453 3.95045 3.98453 4.09901 4.16445 4.24084 4.24916 4.30398 4.36049 4.44736 4.48845 4.50061 4.54199 4.61995 4.69479 4.73851 4.74450 4.77201 4.81390 4.87615 4.91385 4.93761 4.96634 5.00069 5.04621 5.12648 5.15593 5.18044 5.21214 5.23324 5.26949 5.32940 5.39350 5.44927 5.49181 5.57318 5.61880 5.64165 5.78150 6.47134 6.49774 7.09415 7.23183 7.99340 8.12442 9.13996 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.003204 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.821508 B = 8738.253993 C = 8935.691357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.094 0.906 4 C -0.122 4.122 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.145 4.145 8 C 0.512 3.488 9 O -0.557 6.557 10 N -0.607 5.607 11 C 0.124 3.876 12 C -0.127 4.127 13 C 0.179 3.821 14 N -0.750 5.750 15 C -0.323 4.323 16 H 0.070 0.930 17 C -0.107 4.107 18 N -0.979 5.979 19 Si 1.131 2.869 20 H -0.268 1.268 21 H -0.294 1.294 22 H -0.292 1.292 23 C -0.139 4.139 24 C 0.100 3.900 25 C -0.048 4.048 26 C -0.134 4.134 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.356 0.644 44 H 0.243 0.757 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.121 0.879 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.036 0.964 53 H 0.026 0.974 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 18.280 -16.843 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.112 0.888 4 C -0.160 4.160 5 C -0.169 4.169 6 C -0.073 4.073 7 C -0.202 4.202 8 C 0.303 3.697 9 O -0.437 6.437 10 N -0.340 5.340 11 C 0.001 3.999 12 C -0.166 4.166 13 C 0.071 3.929 14 N -0.392 5.392 15 C -0.455 4.455 16 H 0.088 0.912 17 C -0.298 4.298 18 N -0.628 5.628 19 Si 0.956 3.044 20 H -0.193 1.193 21 H -0.222 1.222 22 H -0.219 1.219 23 C -0.179 4.179 24 C -0.022 4.022 25 C -0.048 4.048 26 C -0.191 4.191 27 C -0.157 4.157 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.188 0.812 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.139 0.861 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.094 0.906 52 H 0.055 0.945 53 H 0.045 0.955 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.197 17.526 -15.981 23.932 hybrid contribution -1.416 -0.321 -0.674 1.601 sum -4.612 17.205 -16.655 24.386 Atomic orbital electron populations 1.21861 0.95143 1.01283 1.01776 1.22057 0.95629 0.99277 0.92992 0.88800 1.22559 0.95633 0.99330 0.98477 1.22945 0.98511 1.02806 0.92656 1.21386 0.98625 0.89422 0.97881 1.22218 0.94631 1.03394 0.99988 1.21344 0.80540 0.89975 0.77813 1.90872 1.30537 1.80715 1.41607 1.48352 1.23433 1.06456 1.55710 1.21414 1.02589 0.80377 0.95528 1.22057 0.97522 1.00808 0.96218 1.20330 0.95360 0.92216 0.84974 1.42694 1.04491 1.77438 1.14536 1.20416 0.86577 1.38356 1.00128 0.91235 1.27157 1.07426 0.99984 0.95226 1.70938 0.97636 1.53942 1.40241 0.82571 0.70663 0.76070 0.75082 1.19306 1.22165 1.21950 1.22450 1.01492 0.97628 0.96358 1.22292 0.86510 1.01621 0.91784 1.21137 0.92791 0.94924 0.95962 1.21985 1.01753 0.98304 0.97096 1.22193 0.96431 0.95592 1.01533 0.92381 0.91949 0.93838 0.94113 0.90252 0.91032 0.87937 0.91712 0.88737 0.91542 0.90375 0.89961 0.91347 0.93366 0.93739 0.81246 0.94675 0.93369 0.91764 0.90281 0.86143 0.92684 0.92379 0.90564 0.94506 0.95515 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.98 71.98 0.57 -1.94 16 2 C -0.08 -1.39 2.91 -9.72 -0.03 -1.42 16 3 H 0.09 1.28 7.84 -2.39 -0.02 1.26 16 4 C -0.12 -2.45 6.33 31.89 0.20 -2.25 16 5 C -0.13 -2.52 4.41 31.67 0.14 -2.38 16 6 C -0.07 -1.39 0.61 -52.20 -0.03 -1.42 16 7 C -0.15 -2.13 6.92 71.98 0.50 -1.64 16 8 C 0.51 13.72 6.21 87.66 0.54 14.26 16 9 O -0.56 -17.91 10.11 -3.03 -0.03 -17.94 16 10 N -0.61 -16.06 2.87 -818.92 -2.35 -18.41 16 11 C 0.12 3.53 6.41 86.36 0.55 4.08 16 12 C -0.13 -4.25 5.55 30.67 0.17 -4.08 16 13 C 0.18 6.84 2.73 45.02 0.12 6.97 16 14 N -0.75 -37.22 5.12 -322.81 -1.65 -38.87 16 15 C -0.32 -17.74 9.93 84.03 0.83 -16.91 16 16 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 17 C -0.11 -6.16 5.50 84.86 0.47 -5.69 16 18 N -0.98 -61.40 13.70 21.65 0.30 -61.10 16 19 Si 1.13 51.51 29.92 68.60 2.05 53.56 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 23 C -0.14 -4.47 5.34 30.67 0.16 -4.31 16 24 C 0.10 2.39 4.18 86.36 0.36 2.75 16 25 C -0.05 -0.91 0.86 -51.46 -0.04 -0.95 16 26 C -0.13 -1.94 7.20 71.98 0.52 -1.42 16 27 C -0.10 -2.52 5.41 71.98 0.39 -2.13 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.97 7.84 -2.39 -0.02 0.95 16 30 H 0.04 0.92 6.41 -2.39 -0.02 0.90 16 31 H 0.04 1.02 8.06 -2.38 -0.02 1.00 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.66 3.83 -2.39 -0.01 1.65 16 34 H 0.10 1.46 7.77 -2.39 -0.02 1.44 16 35 H 0.06 0.99 6.48 -2.39 -0.02 0.97 16 36 H 0.09 0.96 6.88 -2.39 -0.02 0.94 16 37 H 0.07 0.95 5.61 -2.39 -0.01 0.94 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.08 2.45 7.06 -2.39 -0.02 2.43 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 43 H 0.36 18.88 6.63 -92.71 -0.61 18.27 16 44 H 0.24 15.26 6.77 -92.71 -0.63 14.63 16 45 H 0.05 1.67 6.97 -2.38 -0.02 1.65 16 46 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.12 2.32 3.17 -2.39 -0.01 2.31 16 49 H 0.05 0.84 6.64 -2.38 -0.02 0.82 16 50 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.08 0.82 6.84 -2.39 -0.02 0.80 16 52 H 0.04 1.12 5.93 -3.85 -0.02 1.09 16 53 H 0.03 0.60 6.59 -2.39 -0.02 0.59 16 54 H 0.06 1.62 6.27 -19.52 -0.12 1.50 16 Total: -1.00 -68.16 376.18 4.05 -64.11 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.30 Total: 37.13 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 5.43 Total: -18.46 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -3.71 Total: -118.39 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.03 Total: -17.94 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -68.16 4.05 -64.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997056984.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.233 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds