Wall clock time and date at job start Tue Mar 31 2020 15:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47017 * 2 1 4 4 N 1.46502 * 109.47204 * 119.99410 * 2 1 3 5 5 C 1.34773 * 120.00322 * 275.00190 * 4 2 1 6 6 O 1.21279 * 119.99979 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00072 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.46611 * 299.99671 * 7 5 4 9 9 C 1.52993 * 109.47480 * 59.99752 * 7 5 4 10 10 C 1.52994 * 109.47479 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47238 * 300.00530 * 10 9 7 12 12 H 1.08997 * 109.46916 * 299.99465 * 11 10 9 13 13 C 1.52995 * 109.47171 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.47170 * 59.99613 * 11 10 9 15 15 C 1.52997 * 109.46876 * 180.02562 * 7 5 4 16 16 C 1.52994 * 109.47345 * 239.99760 * 2 1 3 17 17 C 1.53033 * 109.45105 * 304.93840 * 16 2 1 18 18 C 1.53195 * 109.31716 * 181.37842 * 17 16 2 19 19 N 1.46926 * 108.77175 * 305.36497 * 18 17 16 20 20 C 1.36940 * 120.62718 * 233.58352 * 19 18 17 21 21 H 1.07997 * 119.99655 * 151.83465 * 20 19 18 22 22 C 1.38813 * 120.00064 * 331.83312 * 20 19 18 23 23 N 1.31615 * 119.99942 * 343.07905 * 22 20 19 24 24 Si 1.86799 * 119.99873 * 163.08163 * 22 20 19 25 25 H 1.48499 * 109.47424 * 89.99675 * 24 22 20 26 26 H 1.48505 * 109.46962 * 210.00053 * 24 22 20 27 27 H 1.48506 * 109.47070 * 329.99895 * 24 22 20 28 28 C 1.46928 * 118.74134 * 53.60495 * 19 18 17 29 29 C 1.53041 * 109.46022 * 64.99787 * 16 2 1 30 30 H 1.08991 * 109.47569 * 60.00562 * 1 2 3 31 31 H 1.09007 * 109.46723 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47195 * 299.99628 * 1 2 3 33 33 H 0.97002 * 119.99463 * 95.00664 * 4 2 1 34 34 H 1.09000 * 109.47295 * 300.00832 * 9 7 5 35 35 H 1.09008 * 109.46975 * 59.99880 * 9 7 5 36 36 H 1.08993 * 109.47468 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.46607 * 59.99923 * 10 9 7 38 38 H 1.08999 * 109.47585 * 299.99798 * 13 11 10 39 39 H 1.09004 * 109.47486 * 59.99995 * 13 11 10 40 40 H 1.09001 * 109.47401 * 179.97438 * 13 11 10 41 41 H 1.08998 * 109.47029 * 180.02562 * 14 11 10 42 42 H 1.08997 * 109.47322 * 60.00100 * 14 11 10 43 43 H 1.08997 * 109.47065 * 299.99340 * 15 7 5 44 44 H 1.09000 * 109.47370 * 59.99786 * 15 7 5 45 45 H 1.09004 * 109.46280 * 184.96781 * 16 2 1 46 46 H 1.09001 * 109.49794 * 61.42441 * 17 16 2 47 47 H 1.09001 * 109.49574 * 301.32750 * 17 16 2 48 48 H 1.08998 * 109.58873 * 185.57563 * 18 17 16 49 49 H 1.08998 * 109.58578 * 65.14486 * 18 17 16 50 50 H 0.96999 * 119.99981 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.58603 * 66.17772 * 28 19 18 52 52 H 1.09004 * 109.58531 * 186.45839 * 28 19 18 53 53 H 1.09004 * 109.49778 * 58.67837 * 29 16 2 54 54 H 1.09004 * 109.52579 * 298.59686 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6500 -0.7283 3.5875 8 1 1.9777 -1.5506 3.8326 9 6 4.0526 -1.2783 3.3215 10 6 4.5634 -1.9987 4.5708 11 6 4.6148 -1.0151 5.7416 12 1 5.2869 -0.1929 5.4961 13 6 5.1250 -1.7358 6.9911 14 6 3.2121 -0.4652 6.0077 15 6 2.7007 0.2547 4.7588 16 6 2.0400 -0.7213 -1.2491 17 6 1.4308 -2.1237 -1.3123 18 6 1.9701 -2.8554 -2.5454 19 7 1.7125 -2.0315 -3.7344 20 6 1.0528 -2.5532 -4.8151 21 1 0.4747 -1.9066 -5.4585 22 6 1.1272 -3.9131 -5.0835 23 7 2.0708 -4.6430 -4.5275 24 14 -0.1118 -4.7071 -6.2341 25 1 0.4024 -4.6567 -7.6263 26 1 -0.3221 -6.1219 -5.8349 27 1 -1.4008 -3.9738 -6.1557 28 6 2.1766 -0.6375 -3.7420 29 6 1.6350 0.0692 -2.4954 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 2.2491 -1.6317 1.1527 34 1 4.0161 -1.9786 2.4871 35 1 4.7249 -0.4559 3.0763 36 1 5.5625 -2.3909 4.3811 37 1 3.8912 -2.8210 4.8163 38 1 4.4527 -2.5578 7.2365 39 1 6.1244 -2.1279 6.8018 40 1 5.1621 -1.0349 7.8251 41 1 3.2488 0.2358 6.8415 42 1 2.5400 -1.2874 6.2532 43 1 3.3726 1.0772 4.5140 44 1 1.7012 0.6461 4.9482 45 1 3.1264 -0.7989 -1.2056 46 1 0.3457 -2.0462 -1.3809 47 1 1.7003 -2.6782 -0.4134 48 1 1.4655 -3.8159 -2.6501 49 1 3.0429 -3.0138 -2.4361 50 1 2.1225 -5.5933 -4.7148 51 1 3.2663 -0.6151 -3.7302 52 1 1.8104 -0.1354 -4.6375 53 1 2.0499 1.0756 -2.4387 54 1 0.5480 0.1266 -2.5532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997399767.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:33 Heat of formation + Delta-G solvation = -76.942897 kcal Electronic energy + Delta-G solvation = -28608.292965 eV Core-core repulsion = 24963.820977 eV Total energy + Delta-G solvation = -3644.471988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.41135 -39.85957 -38.76232 -36.76698 -34.57969 -33.75415 -32.49297 -31.61714 -31.55997 -30.22802 -27.76159 -27.11112 -25.01712 -23.97671 -23.54231 -23.24332 -21.95383 -21.03908 -20.59604 -20.16874 -18.63587 -18.12661 -17.06602 -16.80674 -16.48116 -15.72955 -15.71805 -15.41267 -15.24237 -15.13259 -15.07835 -14.98533 -14.68003 -14.21261 -14.06774 -14.05368 -13.54885 -13.47222 -13.17579 -13.08304 -13.04947 -12.93706 -12.89721 -12.54949 -12.44712 -12.34872 -12.14865 -11.99720 -11.93465 -11.87773 -11.69507 -11.56780 -11.51786 -11.24765 -11.17148 -10.98876 -10.89819 -10.58050 -10.50635 -10.03055 -8.64588 -7.85937 -5.30519 1.46582 1.48270 1.57703 1.68031 2.25021 2.52333 3.28445 3.62504 3.70921 3.72325 3.77816 3.84341 3.91208 4.06083 4.16214 4.18522 4.26890 4.40950 4.44896 4.45777 4.52443 4.58324 4.59849 4.64742 4.65932 4.73141 4.80184 4.85536 4.94802 4.95355 4.98259 5.01426 5.03750 5.07246 5.15549 5.18153 5.21524 5.26225 5.28182 5.28532 5.32841 5.35077 5.44068 5.44472 5.46997 5.54878 5.60736 5.63581 5.69509 5.83271 6.41617 6.60974 7.17809 7.29664 7.89640 8.40727 9.20105 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002571 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.892410 B =10887.287332 C =11676.352226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.072 0.928 4 N -0.715 5.715 5 C 0.514 3.486 6 O -0.585 6.585 7 C -0.100 4.100 8 H 0.114 0.886 9 C -0.109 4.109 10 C -0.109 4.109 11 C -0.095 4.095 12 H 0.062 0.938 13 C -0.145 4.145 14 C -0.108 4.108 15 C -0.095 4.095 16 C -0.074 4.074 17 C -0.120 4.120 18 C 0.177 3.823 19 N -0.610 5.610 20 C -0.261 4.261 21 H 0.063 0.937 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.272 1.272 28 C 0.141 3.859 29 C -0.116 4.116 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.409 0.591 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.052 0.948 49 H -0.006 1.006 50 H 0.249 0.751 51 H 0.011 0.989 52 H 0.051 0.949 53 H 0.075 0.925 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 5.895 22.056 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.090 0.910 4 N -0.366 5.366 5 C 0.302 3.698 6 O -0.466 6.466 7 C -0.121 4.121 8 H 0.132 0.868 9 C -0.146 4.146 10 C -0.147 4.147 11 C -0.113 4.113 12 H 0.081 0.919 13 C -0.202 4.202 14 C -0.145 4.145 15 C -0.134 4.134 16 C -0.093 4.093 17 C -0.159 4.159 18 C 0.051 3.949 19 N -0.334 5.334 20 C -0.391 4.391 21 H 0.081 0.919 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.197 1.197 28 C 0.015 3.985 29 C -0.155 4.155 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.246 0.754 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.012 0.988 50 H 0.059 0.941 51 H 0.029 0.971 52 H 0.070 0.930 53 H 0.094 0.906 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.071 6.569 22.050 23.212 hybrid contribution -0.318 -0.933 -1.138 1.505 sum 2.753 5.635 20.912 21.832 Atomic orbital electron populations 1.22160 0.95128 1.02396 1.01724 1.20836 0.94258 0.96162 0.83633 0.90964 1.46175 1.66488 1.14630 1.09332 1.21237 0.76326 0.86873 0.85374 1.90656 1.52204 1.17957 1.85735 1.21386 0.99293 0.99527 0.91885 0.86840 1.21525 0.93553 1.00175 0.99388 1.21578 1.01869 0.97922 0.93289 1.21167 0.96549 0.97997 0.95615 0.91948 1.21803 1.01136 1.00439 0.96845 1.21579 0.96431 1.00102 0.96438 1.21278 1.01271 0.97013 0.93795 1.21161 0.99683 0.95151 0.93284 1.22084 1.00322 0.95474 0.98021 1.20595 0.95486 0.94117 0.84672 1.44324 1.66318 1.08622 1.14136 1.19483 1.22073 0.92260 1.05292 0.91889 1.25751 0.99357 0.98484 1.00974 1.70174 1.33000 1.06230 1.48598 0.85340 0.79504 0.77405 0.78575 1.21316 1.21785 1.19682 1.21037 0.95428 0.85239 0.96751 1.21924 1.01184 0.98251 0.94158 0.91253 0.91866 0.93452 0.75408 0.90634 0.92519 0.91025 0.90752 0.92230 0.92470 0.92511 0.91285 0.90986 0.92985 0.92483 0.91638 0.92359 0.91214 0.92935 0.98756 0.94145 0.97126 0.92998 0.90613 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.75 71.98 0.63 -3.46 16 2 C 0.16 4.14 2.35 44.99 0.11 4.24 16 3 H 0.07 2.11 7.58 -2.38 -0.02 2.09 16 4 N -0.71 -16.56 4.90 -442.54 -2.17 -18.73 16 5 C 0.51 12.72 7.12 87.66 0.62 13.34 16 6 O -0.59 -19.16 15.64 -3.03 -0.05 -19.21 16 7 C -0.10 -1.76 2.53 -11.54 -0.03 -1.79 16 8 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 9 C -0.11 -1.65 5.10 30.59 0.16 -1.50 16 10 C -0.11 -1.32 5.20 30.59 0.16 -1.17 16 11 C -0.09 -1.16 2.72 -10.80 -0.03 -1.19 16 12 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 13 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 14 C -0.11 -1.41 5.20 30.58 0.16 -1.25 16 15 C -0.10 -1.73 4.49 30.58 0.14 -1.59 16 16 C -0.07 -2.20 2.08 -10.77 -0.02 -2.22 16 17 C -0.12 -4.05 4.71 30.67 0.14 -3.91 16 18 C 0.18 8.16 5.30 86.36 0.46 8.62 16 19 N -0.61 -30.10 2.99 -699.09 -2.09 -32.19 16 20 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 21 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 22 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 23 N -0.93 -54.56 11.20 21.65 0.24 -54.32 16 24 Si 0.96 44.55 29.59 68.60 2.03 46.58 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.14 5.74 6.52 86.36 0.56 6.31 16 29 C -0.12 -3.71 5.08 30.67 0.16 -3.55 16 30 H 0.07 1.80 6.60 -2.39 -0.02 1.78 16 31 H 0.06 1.65 6.38 -2.38 -0.02 1.63 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.41 8.02 6.57 -92.71 -0.61 7.41 16 34 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 2.04 6.43 -2.39 -0.02 2.03 16 47 H 0.07 1.96 6.74 -2.39 -0.02 1.95 16 48 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 49 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 51 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 53 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 54 H 0.06 2.06 6.64 -2.38 -0.02 2.04 16 Total: -1.00 -66.01 399.50 3.30 -62.72 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.24 Total: 20.88 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.10 Total: -5.73 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.02 Total: -105.24 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.01 3.30 -62.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997399767.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.226 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds