Wall clock time and date at job start Tue Mar 31 2020 15:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.43362 * 2 1 4 4 C 1.54889 * 110.48603 * 122.54499 * 2 1 3 5 5 C 1.54885 * 102.74899 * 156.61988 * 4 2 1 6 6 C 1.54266 * 104.19627 * 322.05723 * 5 4 2 7 7 C 1.52999 * 110.03231 * 142.94346 * 6 5 4 8 8 C 1.50693 * 110.03166 * 264.32504 * 6 5 4 9 9 O 1.21285 * 119.99931 * 114.23389 * 8 6 5 10 10 N 1.34776 * 119.99993 * 294.23453 * 8 6 5 11 11 C 1.46496 * 120.00142 * 5.78658 * 10 8 6 12 12 C 1.46506 * 120.00089 * 185.78928 * 10 8 6 13 13 C 1.53784 * 113.61248 * 240.00469 * 12 10 8 14 14 C 1.53784 * 87.16777 * 220.05692 * 13 12 10 15 15 N 1.46496 * 113.61673 * 270.75282 * 14 13 12 16 16 C 1.36936 * 120.00323 * 205.00067 * 15 14 13 17 17 H 1.08004 * 119.99895 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99942 * 180.02562 * 16 15 14 19 19 N 1.31627 * 120.00188 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00375 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47204 * 89.99840 * 20 18 16 22 22 H 1.48501 * 109.47559 * 210.00081 * 20 18 16 23 23 H 1.48504 * 109.46901 * 330.00199 * 20 18 16 24 24 C 1.53781 * 87.08423 * 25.39154 * 14 13 12 25 25 C 1.53880 * 106.59847 * 23.61093 * 6 5 4 26 26 C 1.53002 * 110.03205 * 119.28597 * 25 6 5 27 27 C 1.52999 * 110.02990 * 240.71580 * 25 6 5 28 28 H 1.08997 * 109.47260 * 298.91301 * 1 2 3 29 29 H 1.09008 * 109.47048 * 58.91075 * 1 2 3 30 30 H 1.08997 * 109.47045 * 178.91069 * 1 2 3 31 31 H 1.08995 * 110.75824 * 38.30360 * 4 2 1 32 32 H 1.09005 * 110.91414 * 275.00989 * 4 2 1 33 33 H 1.09001 * 110.48748 * 203.37611 * 5 4 2 34 34 H 1.09004 * 110.48507 * 80.73446 * 5 4 2 35 35 H 1.09003 * 109.47119 * 182.09603 * 7 6 5 36 36 H 1.09000 * 109.47412 * 302.09188 * 7 6 5 37 37 H 1.08999 * 109.47358 * 62.09017 * 7 6 5 38 38 H 1.08994 * 109.47418 * 268.07526 * 11 10 8 39 39 H 1.09003 * 109.47119 * 28.07808 * 11 10 8 40 40 H 1.09007 * 109.47093 * 148.07411 * 11 10 8 41 41 H 1.09005 * 112.90402 * 11.24839 * 12 10 8 42 42 H 1.08996 * 113.61797 * 105.47140 * 13 12 10 43 43 H 1.08996 * 113.61487 * 334.64073 * 13 12 10 44 44 H 1.09006 * 113.61464 * 139.93402 * 14 13 12 45 45 H 0.97006 * 119.99792 * 25.00523 * 15 14 13 46 46 H 0.96992 * 120.00312 * 180.02562 * 19 18 16 47 47 H 1.08998 * 113.61839 * 89.11154 * 24 14 13 48 48 H 1.09000 * 113.61017 * 219.93809 * 24 14 13 49 49 H 1.08999 * 109.46922 * 59.99901 * 26 25 6 50 50 H 1.09000 * 109.47007 * 179.97438 * 26 25 6 51 51 H 1.08997 * 109.46901 * 299.99792 * 26 25 6 52 52 H 1.08996 * 109.47081 * 61.01503 * 27 25 6 53 53 H 1.08997 * 109.47177 * 181.01663 * 27 25 6 54 54 H 1.08996 * 109.47109 * 301.01389 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4906 -1.1971 0.7614 6 6 3.3165 -1.5414 -0.7322 7 6 4.5470 -1.0895 -1.5212 8 6 3.1128 -3.0251 -0.8995 9 8 2.0537 -3.4492 -1.3112 10 7 4.1075 -3.8808 -0.5917 11 6 5.3394 -3.3811 0.0238 12 6 3.9569 -5.3108 -0.8728 13 6 4.0500 -6.1979 0.3799 14 6 4.8595 -7.1877 -0.4745 15 7 4.0317 -8.1761 -1.1701 16 6 4.5656 -9.3844 -1.5306 17 1 5.5969 -9.6090 -1.3017 18 6 3.7813 -10.3207 -2.1902 19 7 4.2943 -11.4824 -2.5363 20 14 1.9978 -9.9321 -2.5868 21 1 1.9164 -9.2894 -3.9231 22 1 1.2068 -11.1889 -2.5929 23 1 1.4521 -9.0088 -1.5595 24 6 5.2551 -5.9869 -1.3499 25 6 2.0699 -0.7803 -1.2164 26 6 2.4507 0.1912 -2.3353 27 6 1.0138 -1.7682 -1.7160 28 1 -0.3633 0.4968 0.8995 29 1 -0.3633 0.5307 -0.8801 30 1 -0.3633 -1.0275 -0.0195 31 1 1.4581 -1.6583 1.4243 32 1 2.1250 -0.1383 2.1023 33 1 3.8315 -2.0706 1.3171 34 1 4.1897 -0.3696 0.8832 35 1 4.3986 -1.3033 -2.5797 36 1 4.6933 -0.0181 -1.3840 37 1 5.4258 -1.6250 -1.1620 38 1 6.0664 -3.1493 -0.7545 39 1 5.1199 -2.4798 0.5962 40 1 5.7485 -4.1426 0.6879 41 1 3.0935 -5.5311 -1.5006 42 1 3.0882 -6.5906 0.7094 43 1 4.6244 -5.7497 1.1906 44 1 5.6994 -7.6369 0.0557 45 1 3.1053 -7.9745 -1.3754 46 1 3.7464 -12.1365 -2.9975 47 1 6.1592 -5.4798 -1.0130 48 1 5.2674 -6.2097 -2.4169 49 1 2.8774 -0.3651 -3.1699 50 1 1.5616 0.7247 -2.6715 51 1 3.1842 0.9058 -1.9620 52 1 0.7182 -2.4276 -0.9000 53 1 0.1427 -1.2191 -2.0732 54 1 1.4283 -2.3618 -2.5308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999507784.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:07 Heat of formation + Delta-G solvation = 25.885730 kcal Electronic energy + Delta-G solvation = -29941.460433 eV Core-core repulsion = 26301.447429 eV Total energy + Delta-G solvation = -3640.013004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.56501 -40.48500 -38.59697 -36.73251 -35.19634 -33.62930 -33.09262 -32.22062 -28.95800 -28.67176 -27.93629 -26.64765 -26.39634 -25.15226 -24.62761 -24.04467 -22.15827 -20.76863 -19.89349 -19.58773 -19.10415 -17.76488 -17.10911 -16.85597 -16.64278 -16.14922 -16.00961 -15.69564 -15.44334 -14.93753 -14.78829 -14.64005 -14.52906 -14.37536 -14.22803 -13.95567 -13.78717 -13.49082 -13.41077 -13.37129 -13.12812 -12.90284 -12.71944 -12.65450 -12.35466 -12.28273 -12.12890 -11.99585 -11.84505 -11.82436 -11.72641 -11.65486 -11.44738 -11.25818 -11.20790 -11.13555 -11.01260 -10.94454 -9.52767 -9.43295 -9.34739 -8.08200 -5.41134 1.32395 1.33902 1.40082 1.66512 2.09880 2.41426 3.22328 3.37037 3.43840 3.51892 3.58830 3.72581 3.81712 4.00173 4.18309 4.19727 4.20638 4.26496 4.29058 4.40869 4.46913 4.50651 4.55247 4.65980 4.69541 4.72200 4.76535 4.78237 4.81141 4.86140 4.91032 4.95526 4.99739 5.01598 5.05108 5.09017 5.14183 5.16902 5.18855 5.24286 5.25927 5.28104 5.29599 5.37449 5.42468 5.51934 5.59623 5.70054 5.75389 5.81220 6.17780 6.56300 7.01505 7.32451 7.78783 7.95177 9.13059 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.003303 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.119207 B = 8474.868605 C = 9109.001957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.096 0.904 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.069 4.069 7 C -0.151 4.151 8 C 0.501 3.499 9 O -0.566 6.566 10 N -0.599 5.599 11 C 0.047 3.953 12 C 0.128 3.872 13 C -0.149 4.149 14 C 0.155 3.845 15 N -0.739 5.739 16 C -0.229 4.229 17 H 0.068 0.932 18 C -0.057 4.057 19 N -0.979 5.979 20 Si 0.944 3.056 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.262 1.262 24 C -0.160 4.160 25 C -0.051 4.051 26 C -0.136 4.136 27 C -0.096 4.096 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.113 0.887 48 H 0.047 0.953 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.081 0.919 52 H 0.051 0.949 53 H 0.016 0.984 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 32.470 9.038 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.114 0.886 4 C -0.159 4.159 5 C -0.152 4.152 6 C -0.072 4.072 7 C -0.208 4.208 8 C 0.292 3.708 9 O -0.447 6.447 10 N -0.330 5.330 11 C -0.094 4.094 12 C 0.024 3.976 13 C -0.188 4.188 14 C 0.045 3.955 15 N -0.380 5.380 16 C -0.360 4.360 17 H 0.086 0.914 18 C -0.249 4.249 19 N -0.629 5.629 20 Si 0.772 3.228 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.187 1.187 24 C -0.202 4.202 25 C -0.052 4.052 26 C -0.193 4.193 27 C -0.152 4.152 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.194 0.806 46 H 0.068 0.932 47 H 0.131 0.869 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.100 0.900 52 H 0.070 0.930 53 H 0.035 0.965 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.389 32.055 8.803 33.244 hybrid contribution -1.440 -1.082 -0.939 2.032 sum -1.052 30.973 7.863 31.973 Atomic orbital electron populations 1.21865 0.95560 1.01169 1.01668 1.22036 0.95333 0.99360 0.93111 0.88597 1.22570 0.95664 0.99460 0.98203 1.22717 0.98450 1.02764 0.91243 1.21388 0.98032 0.88753 0.98989 1.22307 0.95707 1.03643 0.99100 1.21624 0.82636 0.90433 0.76075 1.90949 1.25851 1.80483 1.47391 1.48093 1.17890 1.06250 1.60758 1.22602 0.85713 1.02059 0.98989 1.22287 0.98458 0.79494 0.97376 1.23823 1.00799 0.96516 0.97695 1.21182 0.93896 0.87619 0.92795 1.42590 1.10794 1.14916 1.69661 1.19101 0.96573 0.91195 1.29126 0.91445 1.25358 1.01853 0.96125 1.01521 1.69844 1.37592 1.08173 1.47314 0.85580 0.81642 0.77091 0.78485 1.20940 1.21660 1.18705 1.24101 0.97640 0.98013 1.00412 1.21186 0.93013 0.94795 0.96193 1.22003 1.01638 0.98447 0.97197 1.22174 0.96606 0.95473 1.00980 0.91897 0.92702 0.94061 0.93938 0.89249 0.90417 0.87107 0.93626 0.88702 0.89949 0.90986 0.87335 0.89949 0.90828 0.92934 0.86500 0.90504 0.80554 0.93229 0.86903 0.93407 0.93582 0.92804 0.89994 0.93040 0.96544 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.04 71.98 0.58 -1.80 16 2 C -0.08 -1.17 2.91 -9.72 -0.03 -1.20 16 3 H 0.10 1.01 7.84 -2.39 -0.02 1.00 16 4 C -0.12 -1.71 6.33 31.88 0.20 -1.51 16 5 C -0.11 -1.38 4.54 31.67 0.14 -1.23 16 6 C -0.07 -1.19 0.61 -52.20 -0.03 -1.22 16 7 C -0.15 -1.93 6.91 71.98 0.50 -1.43 16 8 C 0.50 13.28 6.26 87.66 0.55 13.83 16 9 O -0.57 -20.09 9.93 -3.05 -0.03 -20.12 16 10 N -0.60 -14.34 3.07 -819.30 -2.52 -16.86 16 11 C 0.05 0.67 6.98 127.77 0.89 1.56 16 12 C 0.13 3.99 4.07 45.58 0.19 4.17 16 13 C -0.15 -4.46 7.37 31.12 0.23 -4.23 16 14 C 0.16 5.72 4.56 45.52 0.21 5.93 16 15 N -0.74 -35.51 5.12 -320.44 -1.64 -37.15 16 16 C -0.23 -13.20 10.45 84.03 0.88 -12.32 16 17 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 18 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 19 N -0.98 -63.47 13.97 21.65 0.30 -63.17 16 20 Si 0.94 47.93 27.74 68.60 1.90 49.83 16 21 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 23 H -0.26 -12.51 6.52 99.48 0.65 -11.86 16 24 C -0.16 -5.00 7.33 31.18 0.23 -4.77 16 25 C -0.05 -0.96 0.86 -51.46 -0.04 -1.00 16 26 C -0.14 -2.05 7.21 71.98 0.52 -1.53 16 27 C -0.10 -2.60 5.34 71.98 0.38 -2.21 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.86 7.88 -2.38 -0.02 0.84 16 30 H 0.04 0.86 6.32 -2.39 -0.02 0.84 16 31 H 0.04 0.82 8.06 -2.39 -0.02 0.81 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 0.97 5.74 -2.39 -0.01 0.95 16 34 H 0.11 0.67 7.85 -2.38 -0.02 0.66 16 35 H 0.04 0.75 6.79 -2.39 -0.02 0.74 16 36 H 0.09 0.74 6.68 -2.39 -0.02 0.73 16 37 H 0.08 0.85 4.43 -2.39 -0.01 0.84 16 38 H 0.07 0.86 6.83 -2.39 -0.02 0.84 16 39 H 0.11 1.03 3.64 -2.39 -0.01 1.02 16 40 H 0.08 1.03 6.42 -2.38 -0.02 1.02 16 41 H 0.07 2.89 7.28 -2.38 -0.02 2.87 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.12 2.67 6.90 -2.39 -0.02 2.65 16 44 H 0.08 2.81 8.10 -2.38 -0.02 2.79 16 45 H 0.36 17.50 5.76 -92.70 -0.53 16.96 16 46 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.11 2.67 6.77 -2.39 -0.02 2.65 16 48 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 0.80 6.76 -2.39 -0.02 0.78 16 50 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.08 0.82 6.70 -2.39 -0.02 0.81 16 52 H 0.05 1.64 5.58 -19.84 -0.11 1.53 16 53 H 0.02 0.41 6.98 -2.39 -0.02 0.40 16 54 H 0.03 1.15 6.34 -12.50 -0.08 1.07 16 Total: -1.00 -74.65 378.55 4.01 -70.64 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.14 Total: 28.74 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.86 Total: -11.91 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.85 Total: -117.18 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.03 Total: -20.12 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.90 Total: 49.83 kcal Total: -74.65 4.01 -70.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999507784.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.523 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds