Wall clock time and date at job start Tue Mar 31 2020 15:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.43248 * 2 1 4 4 C 1.54890 * 110.48897 * 122.54000 * 2 1 3 5 5 C 1.54883 * 102.74846 * 156.62155 * 4 2 1 6 6 C 1.54264 * 104.19756 * 322.05825 * 5 4 2 7 7 C 1.52998 * 110.03483 * 142.94039 * 6 5 4 8 8 C 1.50700 * 110.03352 * 264.32477 * 6 5 4 9 9 O 1.21282 * 120.00081 * 126.55121 * 8 6 5 10 10 N 1.34772 * 120.00025 * 306.55917 * 8 6 5 11 11 C 1.46923 * 120.63065 * 2.89839 * 10 8 6 12 12 C 1.52761 * 109.01125 * 233.58463 * 11 10 8 13 13 C 1.53039 * 109.38436 * 305.59014 * 12 11 10 14 14 C 1.53039 * 109.53769 * 61.23745 * 13 12 11 15 15 H 1.09003 * 109.52683 * 58.59840 * 14 13 12 16 16 N 1.46501 * 109.49660 * 178.68463 * 14 13 12 17 17 C 1.36941 * 119.99912 * 274.83639 * 16 14 13 18 18 H 1.08002 * 119.99524 * 359.97438 * 17 16 14 19 19 C 1.38806 * 120.00057 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00107 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47355 * 59.99696 * 21 19 17 23 23 H 1.48501 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47103 * 299.99371 * 21 19 17 25 25 C 1.46923 * 120.63212 * 183.18499 * 10 8 6 26 26 C 1.53881 * 106.59772 * 23.61030 * 6 5 4 27 27 C 1.53003 * 110.03381 * 119.28766 * 26 6 5 28 28 C 1.53002 * 110.03163 * 240.71501 * 26 6 5 29 29 H 1.08999 * 109.47459 * 298.91121 * 1 2 3 30 30 H 1.08992 * 109.47667 * 58.91484 * 1 2 3 31 31 H 1.09003 * 109.47026 * 178.91659 * 1 2 3 32 32 H 1.08998 * 110.75330 * 38.30425 * 4 2 1 33 33 H 1.09001 * 110.75218 * 274.93702 * 4 2 1 34 34 H 1.08998 * 110.48566 * 203.38061 * 5 4 2 35 35 H 1.09004 * 110.60238 * 80.78951 * 5 4 2 36 36 H 1.09008 * 109.47211 * 184.05095 * 7 6 5 37 37 H 1.08999 * 109.47592 * 304.05238 * 7 6 5 38 38 H 1.09005 * 109.47263 * 64.05508 * 7 6 5 39 39 H 1.09006 * 109.58859 * 353.42053 * 11 10 8 40 40 H 1.09001 * 109.58721 * 113.84270 * 11 10 8 41 41 H 1.08998 * 109.56716 * 185.54580 * 12 11 10 42 42 H 1.09005 * 109.38270 * 65.51831 * 12 11 10 43 43 H 1.08999 * 109.46010 * 301.21709 * 13 12 11 44 44 H 1.09002 * 109.44888 * 181.24652 * 13 12 11 45 45 H 0.96994 * 120.00054 * 94.84063 * 16 14 13 46 46 H 0.96997 * 120.00161 * 180.02562 * 20 19 17 47 47 H 1.09009 * 109.58305 * 246.15586 * 25 10 8 48 48 H 1.09005 * 109.58766 * 6.43017 * 25 10 8 49 49 H 1.09002 * 109.46965 * 59.99610 * 27 26 6 50 50 H 1.08997 * 109.46757 * 179.97438 * 27 26 6 51 51 H 1.09002 * 109.46688 * 299.99996 * 27 26 6 52 52 H 1.09008 * 109.47055 * 54.36005 * 28 26 6 53 53 H 1.08994 * 109.47354 * 174.35964 * 28 26 6 54 54 H 1.08996 * 109.47389 * 294.36497 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0722 -0.7804 1.2231 5 6 3.4907 -1.1969 0.7615 6 6 3.3166 -1.5414 -0.7321 7 6 4.5470 -1.0893 -1.5212 8 6 3.1130 -3.0251 -0.8994 9 8 2.1528 -3.4401 -1.5133 10 7 3.9977 -3.8910 -0.3667 11 6 5.1307 -3.4063 0.4333 12 6 6.4258 -3.9787 -0.1401 13 6 6.3170 -5.5032 -0.2172 14 6 5.1636 -5.8877 -1.1468 15 1 5.3375 -5.4659 -2.1368 16 7 5.0802 -7.3470 -1.2446 17 6 5.8565 -8.0180 -2.1514 18 1 6.5301 -7.4712 -2.7947 19 6 5.7771 -9.4006 -2.2446 20 7 4.9559 -10.0669 -1.4609 21 14 6.8367 -10.3159 -3.4810 22 1 8.2701 -10.0576 -3.1917 23 1 6.5668 -11.7728 -3.3816 24 1 6.5158 -9.8451 -4.8523 25 6 3.8512 -5.3373 -0.5801 26 6 2.0699 -0.7803 -1.2163 27 6 2.4505 0.1912 -2.3354 28 6 1.0139 -1.7683 -1.7159 29 1 -0.3634 0.4968 0.8996 30 1 -0.3634 0.5305 -0.8800 31 1 -0.3633 -1.0275 -0.0194 32 1 1.4581 -1.6582 1.4243 33 1 2.1252 -0.1355 2.1003 34 1 3.8316 -2.0704 1.3172 35 1 4.1916 -0.3710 0.8832 36 1 4.3844 -1.2714 -2.5836 37 1 4.7135 -0.0248 -1.3563 38 1 5.4197 -1.6498 -1.1860 39 1 5.1657 -2.3174 0.3952 40 1 5.0154 -3.7342 1.4664 41 1 7.2620 -3.7056 0.5035 42 1 6.5887 -3.5745 -1.1392 43 1 6.1299 -5.9048 0.7787 44 1 7.2488 -5.9144 -0.6055 45 1 4.4749 -7.8380 -0.6672 46 1 4.9006 -11.0331 -1.5257 47 1 3.6293 -5.8260 0.3687 48 1 3.0403 -5.5224 -1.2847 49 1 2.8773 -0.3652 -3.1699 50 1 1.5614 0.7245 -2.6715 51 1 3.1841 0.9058 -1.9621 52 1 0.8046 -2.5014 -0.9367 53 1 0.0994 -1.2290 -1.9624 54 1 1.3853 -2.2787 -2.6045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000390513.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:31 Heat of formation + Delta-G solvation = -7.192257 kcal Electronic energy + Delta-G solvation = -30224.453609 eV Core-core repulsion = 26583.006236 eV Total energy + Delta-G solvation = -3641.447373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.61005 -39.86725 -38.38804 -36.51114 -34.55376 -33.53990 -32.87102 -32.76022 -30.07963 -28.98806 -28.26032 -26.89271 -25.88654 -24.68773 -24.60642 -23.31263 -22.36588 -21.24892 -20.24219 -19.18530 -19.05768 -17.54282 -16.98132 -16.82184 -16.62762 -16.11342 -15.79288 -15.37243 -15.23039 -15.09573 -14.96028 -14.74786 -14.63594 -14.38153 -14.22486 -14.03517 -13.88892 -13.55938 -13.28670 -12.96111 -12.87733 -12.77183 -12.62685 -12.49746 -12.33958 -12.22875 -12.10319 -12.05465 -11.95032 -11.78639 -11.71102 -11.63744 -11.53627 -11.32764 -11.20671 -11.05620 -10.97313 -10.91508 -9.67275 -9.47351 -9.04811 -7.97711 -5.27623 1.44100 1.47643 1.53613 1.67105 2.01448 2.54467 3.34750 3.38582 3.49751 3.62892 3.79346 3.93628 4.00797 4.10744 4.17087 4.19800 4.24824 4.31693 4.34706 4.41736 4.48215 4.52101 4.56272 4.60814 4.68218 4.75804 4.79610 4.80312 4.83119 4.90531 4.92120 4.96154 5.01955 5.05590 5.07726 5.14530 5.18821 5.19486 5.25635 5.27291 5.30039 5.34710 5.40913 5.41438 5.43963 5.54235 5.55382 5.58988 5.66824 5.80447 6.23747 6.54510 7.28961 7.29984 8.02327 8.26792 9.25484 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.003160 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.995566 B = 8857.739957 C = 9161.923986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.097 0.903 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.068 4.068 7 C -0.145 4.145 8 C 0.504 3.496 9 O -0.566 6.566 10 N -0.603 5.603 11 C 0.089 3.911 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.029 0.971 16 N -0.736 5.736 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.281 1.281 25 C 0.121 3.879 26 C -0.050 4.050 27 C -0.136 4.136 28 C -0.100 4.100 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.372 0.628 46 H 0.252 0.748 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.055 0.945 51 H 0.082 0.918 52 H 0.043 0.957 53 H 0.024 0.976 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 28.153 7.214 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.116 0.884 4 C -0.158 4.158 5 C -0.164 4.164 6 C -0.071 4.071 7 C -0.202 4.202 8 C 0.296 3.704 9 O -0.446 6.446 10 N -0.335 5.335 11 C -0.032 4.032 12 C -0.164 4.164 13 C -0.167 4.167 14 C 0.060 3.940 15 H 0.047 0.953 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.207 1.207 25 C -0.004 4.004 26 C -0.050 4.050 27 C -0.193 4.193 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.204 0.796 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.074 0.926 51 H 0.101 0.899 52 H 0.062 0.938 53 H 0.043 0.957 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.584 27.893 6.746 28.741 hybrid contribution -0.099 -2.014 -0.770 2.159 sum -1.683 25.878 5.976 26.613 Atomic orbital electron populations 1.21866 0.95448 1.01142 1.01735 1.22051 0.95404 0.99425 0.93000 0.88439 1.22572 0.95500 0.99458 0.98273 1.22973 0.98788 1.03300 0.91328 1.21399 0.98230 0.88369 0.99121 1.22200 0.94929 1.03688 0.99355 1.21624 0.80979 0.90331 0.77497 1.90921 1.29643 1.80834 1.43186 1.48304 1.27616 1.05368 1.52254 1.22472 0.84214 1.01898 0.94607 1.21874 0.98263 0.93999 1.02296 1.22059 0.98709 0.96395 0.99551 1.20607 0.93558 0.83495 0.96314 0.95275 1.42496 1.49250 1.01544 1.44329 1.19512 1.15803 0.89942 1.12056 0.90928 1.25569 1.01641 0.97364 1.02048 1.69814 1.42092 1.06833 1.43203 0.85212 0.78682 0.77119 0.78764 1.20020 1.22035 1.20688 1.21486 0.97764 0.80949 1.00168 1.21166 0.92792 0.94775 0.96300 1.21999 1.01736 0.98404 0.97145 1.22181 0.96563 0.95705 1.01239 0.91830 0.92580 0.94079 0.93881 0.89101 0.90100 0.86934 0.93291 0.88008 0.91170 0.85217 0.90280 0.87873 0.91847 0.92753 0.93621 0.79588 0.93947 0.92054 0.92465 0.93654 0.92566 0.89945 0.93787 0.95712 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.97 71.98 0.57 -1.79 16 2 C -0.08 -1.21 2.91 -9.72 -0.03 -1.24 16 3 H 0.10 1.06 7.84 -2.39 -0.02 1.04 16 4 C -0.12 -1.78 6.33 31.88 0.20 -1.58 16 5 C -0.13 -1.73 4.40 31.67 0.14 -1.59 16 6 C -0.07 -1.32 0.61 -52.20 -0.03 -1.36 16 7 C -0.14 -2.25 6.93 71.98 0.50 -1.75 16 8 C 0.50 14.95 6.26 87.66 0.55 15.50 16 9 O -0.57 -21.59 10.02 -3.04 -0.03 -21.62 16 10 N -0.60 -17.42 2.96 -819.73 -2.42 -19.84 16 11 C 0.09 1.78 3.77 86.22 0.32 2.11 16 12 C -0.13 -2.81 5.90 30.53 0.18 -2.63 16 13 C -0.13 -4.27 5.47 30.62 0.17 -4.10 16 14 C 0.17 7.01 2.92 45.07 0.13 7.14 16 15 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 16 N -0.74 -38.55 5.12 -322.57 -1.65 -40.20 16 17 C -0.24 -13.79 9.93 84.03 0.83 -12.95 16 18 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.97 -60.55 13.06 21.65 0.28 -60.26 16 21 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 25 C 0.12 4.54 5.90 86.36 0.51 5.05 16 26 C -0.05 -0.98 0.86 -51.45 -0.04 -1.03 16 27 C -0.14 -2.18 7.21 71.98 0.52 -1.66 16 28 C -0.10 -2.81 5.43 71.98 0.39 -2.42 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.88 7.83 -2.39 -0.02 0.86 16 31 H 0.04 0.85 6.43 -2.39 -0.02 0.83 16 32 H 0.04 0.85 8.06 -2.39 -0.02 0.83 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.17 4.96 -2.39 -0.01 1.16 16 35 H 0.11 0.83 7.82 -2.38 -0.02 0.81 16 36 H 0.05 0.94 6.67 -2.38 -0.02 0.92 16 37 H 0.10 0.95 6.77 -2.39 -0.02 0.93 16 38 H 0.07 1.02 5.23 -2.38 -0.01 1.01 16 39 H 0.13 1.79 3.13 -2.38 -0.01 1.78 16 40 H 0.08 1.44 7.98 -2.39 -0.02 1.42 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.45 7.71 -2.38 -0.02 1.43 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.37 20.91 7.80 -92.71 -0.72 20.19 16 46 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.06 2.52 7.02 -2.38 -0.02 2.51 16 49 H 0.04 0.85 6.71 -2.39 -0.02 0.84 16 50 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.89 6.75 -2.39 -0.02 0.88 16 52 H 0.04 1.45 5.82 -17.06 -0.10 1.35 16 53 H 0.02 0.63 6.51 -2.39 -0.02 0.61 16 54 H 0.04 1.33 6.43 -7.62 -0.05 1.28 16 Total: -1.00 -72.14 379.00 3.63 -68.51 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.04 Total: 32.51 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.38 Total: -8.15 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -3.79 Total: -120.31 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.03 Total: -21.62 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -72.14 3.63 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000390513.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.318 kcal (2) G-P(sol) polarization free energy of solvation -72.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds