Wall clock time and date at job start Tue Mar 31 2020 15:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.43149 * 2 1 4 4 C 1.54889 * 110.48326 * 122.67827 * 2 1 3 5 5 C 1.54894 * 102.74723 * 156.62034 * 4 2 1 6 6 C 1.54269 * 104.19656 * 322.06345 * 5 4 2 7 7 C 1.52992 * 110.03594 * 142.89190 * 6 5 4 8 8 C 1.50705 * 110.02970 * 264.32260 * 6 5 4 9 9 O 1.21283 * 119.99852 * 129.03112 * 8 6 5 10 10 N 1.34773 * 119.99723 * 309.03185 * 8 6 5 11 11 C 1.46922 * 120.63336 * 353.31354 * 10 8 6 12 12 C 1.53622 * 108.54496 * 126.36966 * 11 10 8 13 13 C 1.53043 * 109.24446 * 54.85891 * 12 11 10 14 14 C 1.53039 * 109.53279 * 298.50989 * 13 12 11 15 15 H 1.09001 * 109.49941 * 301.41293 * 14 13 12 16 16 N 1.46503 * 109.52565 * 181.33210 * 14 13 12 17 17 C 1.36933 * 119.99904 * 85.14327 * 16 14 13 18 18 H 1.08004 * 119.99853 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00154 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99513 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99879 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47493 * 60.00174 * 21 19 17 23 23 H 1.48508 * 109.46878 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47313 * 299.99697 * 21 19 17 25 25 C 1.46928 * 120.63036 * 173.59238 * 10 8 6 26 26 C 1.53870 * 106.59941 * 23.60427 * 6 5 4 27 27 C 1.53003 * 110.03261 * 240.71876 * 26 6 5 28 28 C 1.53001 * 110.03248 * 119.28845 * 26 6 5 29 29 H 1.09003 * 109.46712 * 182.54185 * 1 2 3 30 30 H 1.09004 * 109.47073 * 62.54684 * 1 2 3 31 31 H 1.08997 * 109.47704 * 302.54209 * 1 2 3 32 32 H 1.08995 * 110.75994 * 274.93992 * 4 2 1 33 33 H 1.09005 * 110.75585 * 38.31596 * 4 2 1 34 34 H 1.08994 * 110.49018 * 203.37949 * 5 4 2 35 35 H 1.08997 * 110.59441 * 80.78939 * 5 4 2 36 36 H 1.09004 * 109.46920 * 307.95747 * 7 6 5 37 37 H 1.09007 * 109.47516 * 67.95213 * 7 6 5 38 38 H 1.09003 * 109.47157 * 187.95588 * 7 6 5 39 39 H 1.09006 * 109.58669 * 246.20643 * 11 10 8 40 40 H 1.08998 * 109.58627 * 6.62275 * 11 10 8 41 41 H 1.08995 * 109.63254 * 294.86342 * 12 11 10 42 42 H 1.09010 * 109.45628 * 174.74177 * 12 11 10 43 43 H 1.08994 * 109.46208 * 178.49399 * 13 12 11 44 44 H 1.08998 * 109.46110 * 58.52965 * 13 12 11 45 45 H 0.96996 * 120.00007 * 265.14806 * 16 14 13 46 46 H 0.96999 * 119.99489 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58209 * 353.37197 * 25 10 8 48 48 H 1.09000 * 109.58708 * 113.65564 * 25 10 8 49 49 H 1.09002 * 109.46929 * 174.02786 * 27 26 6 50 50 H 1.08997 * 109.47087 * 294.02344 * 27 26 6 51 51 H 1.09002 * 109.47397 * 54.03014 * 27 26 6 52 52 H 1.08998 * 109.46783 * 301.38030 * 28 26 6 53 53 H 1.09002 * 109.46999 * 61.38026 * 28 26 6 54 54 H 1.09005 * 109.47112 * 181.37886 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7834 1.2213 5 6 3.4907 -1.1989 0.7587 6 6 3.3166 -1.5396 -0.7358 7 6 4.5465 -1.0847 -1.5239 8 6 3.1129 -3.0230 -0.9068 9 8 2.1777 -3.4354 -1.5597 10 7 3.9700 -3.8912 -0.3340 11 6 5.1864 -3.4109 0.3354 12 6 5.2164 -3.9803 1.7619 13 6 5.0942 -5.5046 1.6992 14 6 3.7580 -5.8848 1.0572 15 1 2.9406 -5.4585 1.6387 16 7 3.6272 -7.3436 1.0262 17 6 3.1387 -8.0106 2.1178 18 1 2.8495 -7.4611 3.0015 19 6 3.0152 -9.3929 2.0887 20 7 3.3672 -10.0624 1.0116 21 14 2.3482 -10.3026 3.5776 22 1 0.9734 -9.8258 3.8741 23 1 2.3157 -11.7599 3.2937 24 1 3.2246 -10.0454 4.7484 25 6 3.7087 -5.3366 -0.3725 26 6 2.0700 -0.7774 -1.2181 27 6 1.0140 -1.7642 -1.7202 28 6 2.4508 0.1968 -2.3348 29 1 -0.3633 -1.0267 0.0456 30 1 -0.3633 0.4738 -0.9120 31 1 -0.3634 0.5528 0.8663 32 1 2.1250 -0.1407 2.1000 33 1 1.4580 -1.6618 1.4202 34 1 3.8316 -2.0737 1.3122 35 1 4.1915 -0.3733 0.8825 36 1 4.7533 -0.0376 -1.3021 37 1 5.4055 -1.6926 -1.2397 38 1 4.3572 -1.1995 -2.5912 39 1 6.0643 -3.7497 -0.2148 40 1 5.1757 -2.3217 0.3753 41 1 4.3853 -3.5720 2.3367 42 1 6.1576 -3.7102 2.2409 43 1 5.1419 -5.9145 2.7080 44 1 5.9118 -5.9103 1.1035 45 1 3.8867 -7.8371 0.2324 46 1 3.2806 -11.0283 0.9911 47 1 2.7224 -5.5183 -0.7997 48 1 4.4670 -5.8289 -0.9812 49 1 0.0976 -1.2249 -1.9598 50 1 1.3831 -2.2680 -2.6135 51 1 0.8090 -2.5026 -0.9451 52 1 3.2024 0.8952 -1.9669 53 1 2.8549 -0.3598 -3.1804 54 1 1.5662 0.7490 -2.6525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000390518.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:35 Heat of formation + Delta-G solvation = -8.984218 kcal Electronic energy + Delta-G solvation = -30378.204525 eV Core-core repulsion = 26736.679446 eV Total energy + Delta-G solvation = -3641.525078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.61133 -39.84206 -38.41059 -36.50300 -34.53785 -33.48810 -32.89515 -32.77790 -30.07687 -28.96623 -28.25466 -26.88661 -25.84729 -24.65660 -24.59009 -23.36900 -22.33105 -21.33230 -20.21270 -19.17718 -19.04637 -17.54529 -17.04494 -16.86636 -16.62909 -15.96911 -15.82035 -15.62082 -15.15330 -15.08040 -14.97150 -14.75173 -14.55130 -14.35375 -14.15537 -14.00652 -13.84597 -13.55496 -13.26961 -12.96341 -12.90106 -12.82623 -12.70037 -12.51998 -12.34413 -12.21328 -12.14222 -12.06625 -11.85733 -11.75056 -11.69515 -11.66437 -11.47532 -11.36232 -11.22838 -11.12745 -10.96702 -10.91465 -9.72022 -9.47067 -9.04471 -7.97745 -5.27610 1.44061 1.47580 1.53531 1.67119 2.01678 2.54463 3.34697 3.38426 3.49008 3.62666 3.80727 3.93474 4.00870 4.07825 4.16429 4.19994 4.26145 4.30807 4.34413 4.41202 4.49051 4.51738 4.53267 4.59752 4.68881 4.76272 4.80873 4.81043 4.84552 4.87246 4.91167 4.95734 5.00711 5.03603 5.10960 5.13432 5.18085 5.19441 5.25497 5.26152 5.29971 5.34687 5.39050 5.42647 5.44722 5.53428 5.54456 5.60184 5.66283 5.79202 6.23656 6.54779 7.28836 7.29799 8.02210 8.26784 9.25456 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.003407 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.168982 B = 8215.696787 C = 8538.282857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.100 0.900 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.068 4.068 7 C -0.145 4.145 8 C 0.505 3.495 9 O -0.566 6.566 10 N -0.604 5.604 11 C 0.089 3.911 12 C -0.125 4.125 13 C -0.127 4.127 14 C 0.170 3.830 15 H 0.028 0.972 16 N -0.736 5.736 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.121 3.879 26 C -0.049 4.049 27 C -0.102 4.102 28 C -0.134 4.134 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.054 0.946 45 H 0.372 0.628 46 H 0.252 0.748 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.025 0.975 50 H 0.047 0.953 51 H 0.034 0.966 52 H 0.082 0.918 53 H 0.049 0.951 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 28.194 -2.030 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.118 0.882 4 C -0.160 4.160 5 C -0.166 4.166 6 C -0.071 4.071 7 C -0.202 4.202 8 C 0.296 3.704 9 O -0.446 6.446 10 N -0.337 5.337 11 C -0.032 4.032 12 C -0.164 4.164 13 C -0.167 4.167 14 C 0.061 3.939 15 H 0.046 0.954 16 N -0.376 5.376 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.200 1.200 25 C -0.003 4.003 26 C -0.050 4.050 27 C -0.159 4.159 28 C -0.191 4.191 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.148 0.852 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.204 0.796 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.044 0.956 50 H 0.066 0.934 51 H 0.052 0.948 52 H 0.101 0.899 53 H 0.068 0.932 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.134 27.935 -2.214 28.326 hybrid contribution -0.739 -2.043 0.242 2.186 sum 3.395 25.892 -1.972 26.188 Atomic orbital electron populations 1.21859 0.95612 1.00884 1.01774 1.22060 0.95279 0.99515 0.93035 0.88194 1.22572 0.95758 0.99223 0.98460 1.22983 0.98529 1.03350 0.91747 1.21408 0.98533 0.88366 0.98820 1.22226 0.94567 1.03657 0.99735 1.21614 0.80517 0.90312 0.77918 1.90899 1.31197 1.80940 1.41556 1.48293 1.24059 1.05365 1.55954 1.22585 0.86031 1.02035 0.92590 1.22022 1.03616 0.94011 0.96735 1.22054 0.97843 0.96351 1.00440 1.20603 0.95905 0.83526 0.93900 0.95353 1.42492 1.77267 1.01597 1.16257 1.19508 1.33762 0.89999 0.94094 0.90957 1.25558 1.03228 0.97320 1.00400 1.69814 1.55638 1.06763 1.29687 0.85224 0.78353 0.77133 0.79135 1.20732 1.22011 1.19991 1.21483 1.00857 0.81007 0.96977 1.21160 0.92775 0.94787 0.96270 1.22181 0.96687 0.95701 1.01295 1.21988 1.01828 0.98250 0.97019 0.94530 0.92304 0.91944 0.89327 0.94550 0.90275 0.86816 0.88048 0.91165 0.92442 0.90346 0.85243 0.91686 0.87876 0.93587 0.92717 0.79578 0.93946 0.92578 0.92012 0.95627 0.93443 0.94751 0.89881 0.93198 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.93 71.98 0.57 -2.04 16 2 C -0.08 -1.32 2.91 -9.72 -0.03 -1.35 16 3 H 0.10 1.17 7.85 -2.39 -0.02 1.15 16 4 C -0.12 -2.15 6.33 31.89 0.20 -1.94 16 5 C -0.13 -1.98 4.42 31.67 0.14 -1.84 16 6 C -0.07 -1.33 0.61 -52.21 -0.03 -1.36 16 7 C -0.15 -1.97 6.92 71.98 0.50 -1.48 16 8 C 0.51 15.01 6.20 87.66 0.54 15.56 16 9 O -0.57 -21.62 10.14 -3.04 -0.03 -21.65 16 10 N -0.60 -17.51 2.86 -818.05 -2.34 -19.86 16 11 C 0.09 1.78 4.22 86.51 0.36 2.15 16 12 C -0.13 -2.80 5.76 30.82 0.18 -2.62 16 13 C -0.13 -4.25 5.47 30.62 0.17 -4.09 16 14 C 0.17 7.03 2.92 45.07 0.13 7.16 16 15 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 16 N -0.74 -38.55 5.12 -322.56 -1.65 -40.20 16 17 C -0.24 -13.81 9.93 84.04 0.83 -12.98 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 21 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 25 C 0.12 4.56 5.88 86.36 0.51 5.07 16 26 C -0.05 -0.98 0.86 -51.46 -0.04 -1.03 16 27 C -0.10 -2.91 5.47 71.98 0.39 -2.51 16 28 C -0.13 -2.01 7.18 71.98 0.52 -1.49 16 29 H 0.04 0.84 6.68 -2.39 -0.02 0.82 16 30 H 0.06 0.99 7.65 -2.39 -0.02 0.98 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 0.87 8.04 -2.38 -0.02 0.85 16 34 H 0.08 1.39 3.79 -2.39 -0.01 1.38 16 35 H 0.11 0.97 7.76 -2.39 -0.02 0.95 16 36 H 0.10 0.78 6.88 -2.38 -0.02 0.76 16 37 H 0.07 0.87 5.65 -2.38 -0.01 0.85 16 38 H 0.06 0.91 6.45 -2.39 -0.02 0.90 16 39 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.13 1.79 3.19 -2.39 -0.01 1.79 16 41 H 0.06 1.49 6.97 -2.39 -0.02 1.47 16 42 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.37 20.92 7.80 -92.71 -0.72 20.19 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.06 2.48 7.05 -2.39 -0.02 2.46 16 48 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.03 0.66 6.42 -2.39 -0.02 0.65 16 50 H 0.05 1.57 6.38 -9.95 -0.06 1.51 16 51 H 0.03 1.20 5.91 -8.53 -0.05 1.15 16 52 H 0.08 0.82 6.79 -2.39 -0.02 0.80 16 53 H 0.05 0.84 6.70 -2.39 -0.02 0.82 16 54 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -72.23 377.88 3.78 -68.46 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.08 Total: 33.00 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 5.41 Total: -8.59 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -3.71 Total: -120.25 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.03 Total: -21.65 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -72.23 3.78 -68.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000390518.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.472 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds