Wall clock time and date at job start Tue Mar 31 2020 15:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46908 * 2 1 4 4 C 1.52999 * 109.47232 * 239.99792 * 2 1 3 5 5 C 1.53008 * 109.47008 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.46914 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99964 * 354.28932 * 6 5 4 8 8 N 1.34778 * 119.99520 * 174.28935 * 6 5 4 9 9 C 1.46502 * 119.99491 * 176.49699 * 8 6 5 10 10 C 1.46496 * 120.00219 * 356.49353 * 8 6 5 11 11 C 1.53043 * 109.44652 * 126.34238 * 10 8 6 12 12 C 1.53190 * 109.31232 * 181.37935 * 11 10 8 13 13 N 1.46927 * 108.77811 * 305.36693 * 12 11 10 14 14 C 1.36939 * 120.63340 * 233.58930 * 13 12 11 15 15 H 1.07998 * 119.99955 * 147.87748 * 14 13 12 16 16 C 1.38810 * 119.99756 * 327.87544 * 14 13 12 17 17 N 1.31624 * 119.99900 * 346.50439 * 16 14 13 18 18 Si 1.86801 * 120.00019 * 166.49834 * 16 14 13 19 19 H 1.48509 * 109.46757 * 60.00391 * 18 16 14 20 20 H 1.48500 * 109.47017 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47204 * 300.00552 * 18 16 14 22 22 C 1.46932 * 118.73896 * 53.60526 * 13 12 11 23 23 C 1.53041 * 109.46136 * 246.40251 * 10 8 6 24 24 C 1.53000 * 109.46781 * 60.00415 * 5 4 2 25 25 C 1.53004 * 109.46705 * 299.99596 * 24 5 4 26 26 H 1.09009 * 109.46895 * 180.02562 * 25 24 5 27 27 C 1.52998 * 109.47467 * 300.00277 * 25 24 5 28 28 C 1.52991 * 109.47248 * 60.00667 * 25 24 5 29 29 H 1.09005 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47492 * 299.99917 * 1 2 3 31 31 H 1.08998 * 109.47436 * 60.00880 * 1 2 3 32 32 H 1.09003 * 109.46948 * 60.00104 * 4 2 1 33 33 H 1.08998 * 109.47344 * 299.99941 * 4 2 1 34 34 H 1.08998 * 109.47225 * 300.00265 * 5 4 2 35 35 H 1.08996 * 109.46950 * 275.36091 * 9 8 6 36 36 H 1.08998 * 109.47309 * 35.36529 * 9 8 6 37 37 H 1.09005 * 109.46651 * 155.36129 * 9 8 6 38 38 H 1.09002 * 109.46207 * 6.37838 * 10 8 6 39 39 H 1.08998 * 109.49904 * 61.42886 * 11 10 8 40 40 H 1.09001 * 109.49882 * 301.33322 * 11 10 8 41 41 H 1.08994 * 109.59077 * 185.58166 * 12 11 10 42 42 H 1.09007 * 109.58755 * 65.15026 * 12 11 10 43 43 H 0.96999 * 119.99467 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.58111 * 66.18254 * 22 13 12 45 45 H 1.08998 * 109.58452 * 186.46661 * 22 13 12 46 46 H 1.09000 * 109.49403 * 58.67757 * 23 10 8 47 47 H 1.08994 * 109.49973 * 298.58306 * 23 10 8 48 48 H 1.08994 * 109.47814 * 59.99870 * 24 5 4 49 49 H 1.09007 * 109.46777 * 180.02562 * 24 5 4 50 50 H 1.09001 * 109.47112 * 180.02562 * 27 25 24 51 51 H 1.09007 * 109.47377 * 300.00244 * 27 25 24 52 52 H 1.08997 * 109.47052 * 59.99895 * 27 25 24 53 53 H 1.09000 * 109.47574 * 179.97438 * 28 25 24 54 54 H 1.09005 * 109.47438 * 59.99759 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0724 -1.4317 -2.4796 7 8 3.2892 -1.9830 -3.2237 8 7 5.3920 -1.4549 -2.7528 9 6 5.8881 -2.2103 -3.9059 10 6 6.3302 -0.7246 -1.8968 11 6 7.4293 -1.6759 -1.4180 12 6 8.3891 -0.9177 -0.4957 13 7 8.8855 0.2704 -1.2033 14 6 10.2300 0.5020 -1.3201 15 1 10.6179 1.0018 -2.1954 16 6 11.0945 0.0945 -0.3133 17 7 10.6161 -0.2679 0.8581 18 14 12.9366 0.0604 -0.6211 19 1 13.4062 1.4264 -0.9660 20 1 13.6344 -0.4079 0.6033 21 1 13.2337 -0.8636 -1.7449 22 6 7.9117 1.2056 -1.7831 23 6 6.9573 0.4235 -2.6910 24 6 4.0805 -1.4416 -0.0002 25 6 3.5704 -0.7203 1.2490 26 1 3.9344 -1.2336 2.1391 27 6 4.0799 0.7224 1.2487 28 6 2.0405 -0.7208 1.2493 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6767 -0.2074 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 3.9330 0.3071 -1.2497 35 1 6.0288 -3.2536 -3.6234 36 1 5.1650 -2.1484 -4.7192 37 1 6.8396 -1.7908 -4.2329 38 1 5.7977 -0.3219 -1.0352 39 1 7.9782 -2.0598 -2.2778 40 1 6.9800 -2.5058 -0.8725 41 1 9.2274 -1.5621 -0.2312 42 1 7.8619 -0.6111 0.4079 43 1 11.2202 -0.5523 1.5617 44 1 7.3457 1.6852 -0.9845 45 1 8.4352 1.9634 -2.3660 46 1 6.1719 1.0879 -3.0516 47 1 7.5106 0.0199 -3.5388 48 1 3.7176 -2.4694 0.0001 49 1 5.1705 -1.4408 -0.0002 50 1 3.7168 1.2361 2.1389 51 1 5.1699 0.7229 1.2485 52 1 3.7162 1.2359 0.3587 53 1 1.6771 -0.2074 2.1394 54 1 1.6775 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006452982.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:33 Heat of formation + Delta-G solvation = -55.582575 kcal Electronic energy + Delta-G solvation = -30155.821651 eV Core-core repulsion = 26512.275916 eV Total energy + Delta-G solvation = -3643.545735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.84969 -39.66863 -38.98484 -36.55567 -34.11910 -34.01891 -32.89317 -31.80635 -31.25373 -28.41039 -27.66580 -27.19777 -26.91108 -24.32937 -23.81192 -23.42675 -22.23794 -20.86085 -19.97521 -19.59105 -18.71965 -18.01869 -17.12160 -16.74735 -16.47190 -16.08674 -15.70280 -15.63052 -15.35058 -15.06065 -14.80246 -14.78994 -14.41413 -14.35215 -14.21216 -14.05417 -13.78374 -13.36747 -13.22630 -13.08291 -13.00281 -12.92110 -12.72576 -12.58100 -12.50804 -12.40361 -12.12504 -12.08294 -12.00795 -11.88842 -11.82077 -11.81724 -11.48927 -11.42757 -11.29282 -11.11923 -10.79851 -10.57050 -10.49918 -9.62139 -8.60528 -7.85820 -5.34933 1.48995 1.50486 1.56776 1.58347 2.02284 2.52555 3.30487 3.39734 3.68645 3.69833 3.72870 3.80532 4.03112 4.06348 4.14840 4.18563 4.28052 4.34171 4.40931 4.42582 4.46822 4.48288 4.57585 4.62216 4.67934 4.73444 4.80101 4.81585 4.85335 4.90341 4.92138 4.96942 5.02465 5.04260 5.04910 5.08185 5.16278 5.19034 5.20960 5.28989 5.31718 5.34549 5.42632 5.44747 5.50423 5.50550 5.57171 5.65875 5.68393 5.76739 6.40015 6.44402 7.14650 7.18818 7.87741 8.40497 9.20212 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.003686 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.403183 B = 7593.545142 C = 8523.173029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.085 4.085 5 C -0.101 4.101 6 C 0.513 3.487 7 O -0.582 6.582 8 N -0.605 5.605 9 C 0.085 3.915 10 C 0.146 3.854 11 C -0.133 4.133 12 C 0.187 3.813 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.063 0.937 16 C -0.041 4.041 17 N -0.930 5.930 18 Si 0.962 3.038 19 H -0.276 1.276 20 H -0.295 1.295 21 H -0.280 1.280 22 C 0.146 3.854 23 C -0.131 4.131 24 C -0.110 4.110 25 C -0.085 4.085 26 H 0.075 0.925 27 C -0.152 4.152 28 C -0.105 4.105 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.007 0.993 43 H 0.250 0.750 44 H 0.023 0.977 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.042 0.958 52 H 0.063 0.937 53 H 0.076 0.924 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.151 0.062 -1.122 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.123 4.123 5 C -0.121 4.121 6 C 0.303 3.697 7 O -0.463 6.463 8 N -0.336 5.336 9 C -0.057 4.057 10 C 0.043 3.957 11 C -0.173 4.173 12 C 0.061 3.939 13 N -0.331 5.331 14 C -0.396 4.396 15 H 0.080 0.920 16 C -0.238 4.238 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.202 1.202 20 H -0.221 1.221 21 H -0.206 1.206 22 C 0.020 3.980 23 C -0.171 4.171 24 C -0.148 4.148 25 C -0.104 4.104 26 H 0.094 0.906 27 C -0.209 4.209 28 C -0.143 4.143 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.061 0.939 52 H 0.082 0.918 53 H 0.094 0.906 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.452 -0.274 -1.392 17.509 hybrid contribution 1.512 -0.272 -0.101 1.540 sum -15.939 -0.546 -1.493 16.018 Atomic orbital electron populations 1.21789 0.94296 1.01891 1.02136 1.21172 0.96107 0.99830 0.93713 0.90307 1.21337 0.91656 1.01039 0.98281 1.21363 0.98173 1.00720 0.91893 1.21196 0.81504 0.79803 0.87171 1.90625 1.55817 1.48141 1.51701 1.48148 1.06396 1.50021 1.29018 1.21591 1.00133 0.95742 0.88263 1.21316 0.89543 0.91796 0.93028 1.22359 0.96691 0.98013 1.00264 1.20455 0.94492 0.87857 0.91129 1.44238 1.01653 1.22359 1.64867 1.19391 0.83601 1.36164 1.00442 0.91969 1.25814 1.01848 1.01624 0.94485 1.70121 1.34831 1.49577 1.02954 0.85442 0.80938 0.78091 0.76531 1.20228 1.22107 1.20594 1.20986 0.90626 0.91770 0.94586 1.22279 0.98790 0.97209 0.98812 1.21723 1.00806 0.99075 0.93147 1.21055 0.96113 0.96392 0.96811 0.90621 1.21954 1.00470 0.95994 1.02519 1.21619 0.93964 1.00782 0.97887 0.92923 0.91552 0.92676 0.92377 0.92558 0.87827 0.92768 0.91487 0.90269 0.87787 0.92629 0.91808 0.93164 0.97519 0.94097 0.95906 0.92540 0.90604 0.92282 0.92068 0.91446 0.91592 0.93905 0.91816 0.90556 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16 2 C -0.09 -1.52 2.45 -10.79 -0.03 -1.54 16 3 H 0.08 1.28 6.43 -2.39 -0.02 1.27 16 4 C -0.09 -1.86 3.79 30.60 0.12 -1.75 16 5 C -0.10 -2.39 1.40 -11.54 -0.02 -2.41 16 6 C 0.51 15.20 6.99 87.66 0.61 15.82 16 7 O -0.58 -20.63 15.63 -3.04 -0.05 -20.67 16 8 N -0.61 -17.28 2.76 -822.43 -2.27 -19.55 16 9 C 0.09 2.28 9.32 127.77 1.19 3.47 16 10 C 0.15 4.34 1.54 45.02 0.07 4.41 16 11 C -0.13 -4.61 4.93 30.67 0.15 -4.46 16 12 C 0.19 8.32 5.26 86.36 0.45 8.77 16 13 N -0.61 -28.45 2.98 -699.09 -2.08 -30.53 16 14 C -0.27 -13.96 9.56 84.03 0.80 -13.16 16 15 H 0.06 3.21 7.86 -2.91 -0.02 3.19 16 16 C -0.04 -2.23 4.97 84.86 0.42 -1.80 16 17 N -0.93 -52.68 11.28 21.65 0.24 -52.43 16 18 Si 0.96 43.48 29.57 68.60 2.03 45.51 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 C 0.15 5.53 6.52 86.36 0.56 6.10 16 23 C -0.13 -4.02 5.42 30.67 0.17 -3.85 16 24 C -0.11 -2.53 4.29 30.60 0.13 -2.40 16 25 C -0.09 -1.66 3.19 -10.80 -0.03 -1.69 16 26 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 27 C -0.15 -3.02 8.50 71.98 0.61 -2.41 16 28 C -0.11 -1.73 4.73 30.59 0.14 -1.59 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 34 H 0.10 2.34 5.74 -2.39 -0.01 2.33 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.81 7.54 -2.39 -0.02 1.79 16 37 H 0.08 2.01 6.57 -2.38 -0.02 2.00 16 38 H 0.10 2.99 4.21 -2.39 -0.01 2.98 16 39 H 0.05 1.99 7.40 -2.39 -0.02 1.97 16 40 H 0.06 2.06 7.85 -2.39 -0.02 2.04 16 41 H 0.05 2.59 6.26 -2.39 -0.01 2.58 16 42 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 43 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 2.12 7.93 -2.39 -0.02 2.11 16 46 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.06 1.88 7.01 -2.39 -0.02 1.86 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.75 4.98 -2.38 -0.01 1.74 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 52 H 0.06 1.18 4.81 -2.39 -0.01 1.17 16 53 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 54 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -61.51 390.52 4.75 -56.76 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.85 Total: 20.84 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.02 Total: 0.07 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.11 Total: -102.50 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.51 4.75 -56.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006452982.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.175 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds