Wall clock time and date at job start Tue Mar 31 2020 15:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47343 * 2 1 4 4 C 1.53007 * 109.47309 * 119.99787 * 2 1 3 5 5 C 1.52997 * 109.46812 * 59.99795 * 4 2 1 6 6 C 1.53000 * 109.47228 * 60.00433 * 5 4 2 7 7 C 1.52997 * 109.46883 * 299.99609 * 6 5 4 8 8 C 1.52997 * 109.47397 * 239.99895 * 2 1 3 9 9 H 1.08997 * 109.47691 * 180.02562 * 8 2 1 10 10 C 1.52997 * 109.46993 * 59.99768 * 8 2 1 11 11 C 1.50701 * 109.47117 * 175.00509 * 10 8 2 12 12 O 1.21287 * 120.00090 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00000 * 180.02562 * 11 10 8 14 14 C 1.46492 * 120.00269 * 359.97438 * 13 11 10 15 15 C 1.46505 * 119.99716 * 180.02562 * 13 11 10 16 16 C 1.53045 * 109.45693 * 240.02185 * 15 13 11 17 17 C 1.53194 * 109.31188 * 178.60028 * 16 15 13 18 18 N 1.46930 * 108.76351 * 54.65859 * 17 16 15 19 19 C 1.36935 * 120.62790 * 126.36254 * 18 17 16 20 20 H 1.08005 * 119.99629 * 207.69997 * 19 18 17 21 21 C 1.38809 * 120.00392 * 27.70030 * 19 18 17 22 22 N 1.31612 * 120.00058 * 17.34438 * 21 19 18 23 23 Si 1.86802 * 119.99986 * 197.35154 * 21 19 18 24 24 H 1.48501 * 109.47037 * 89.99596 * 23 21 19 25 25 H 1.48496 * 109.47167 * 209.99613 * 23 21 19 26 26 H 1.48494 * 109.47156 * 329.99776 * 23 21 19 27 27 C 1.46929 * 118.73663 * 306.38013 * 18 17 16 28 28 C 1.53038 * 109.46210 * 119.97035 * 15 13 11 29 29 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46985 * 300.00521 * 1 2 3 31 31 H 1.09003 * 109.47018 * 60.00028 * 1 2 3 32 32 H 1.09001 * 109.47229 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46846 * 299.99778 * 4 2 1 34 34 H 1.09003 * 109.47109 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.47413 * 300.00120 * 5 4 2 36 36 H 1.09001 * 109.47305 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47179 * 59.99543 * 6 5 4 38 38 H 1.08997 * 109.47340 * 300.00396 * 7 6 5 39 39 H 1.09001 * 109.47505 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.47117 * 295.00172 * 10 8 2 41 41 H 1.08994 * 109.47232 * 55.00559 * 10 8 2 42 42 H 1.08998 * 109.47326 * 90.00230 * 14 13 11 43 43 H 1.08999 * 109.47399 * 210.00385 * 14 13 11 44 44 H 1.09001 * 109.47095 * 330.00717 * 14 13 11 45 45 H 1.08997 * 109.46503 * 359.97438 * 15 13 11 46 46 H 1.08998 * 109.50093 * 298.56693 * 16 15 13 47 47 H 1.08998 * 109.49557 * 58.66600 * 16 15 13 48 48 H 1.09004 * 109.59917 * 294.87139 * 17 16 15 49 49 H 1.09003 * 109.58581 * 174.43811 * 17 16 15 50 50 H 0.97001 * 120.00155 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.58868 * 293.82098 * 27 18 17 52 52 H 1.09006 * 109.58100 * 173.39660 * 27 18 17 53 53 H 1.09002 * 109.49907 * 301.33556 * 28 15 13 54 54 H 1.09009 * 109.49678 * 61.43029 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2491 8 6 2.0400 -0.7212 -1.2492 9 1 3.1300 -0.7217 -1.2490 10 6 1.5300 -0.0001 -2.4984 11 6 2.1308 -0.6354 -3.7257 12 8 2.8924 -1.5725 -3.6124 13 7 1.8227 -0.1617 -4.9493 14 6 0.9033 0.9705 -5.0862 15 6 2.4064 -0.7798 -6.1424 16 6 3.2193 0.2642 -6.9115 17 6 3.8567 -0.3939 -8.1393 18 7 2.8007 -1.0392 -8.9313 19 6 2.6561 -0.7564 -10.2633 20 1 1.6870 -0.8444 -10.7319 21 6 3.7550 -0.3566 -11.0113 22 7 4.9722 -0.5701 -10.5584 23 14 3.5062 0.4846 -12.6605 24 1 3.4214 1.9535 -12.4591 25 1 4.6512 0.1727 -13.5530 26 1 2.2481 -0.0034 -13.2803 27 6 1.9026 -1.9935 -8.2667 28 6 1.2875 -1.3176 -7.0373 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -0.2073 2.1393 34 1 1.8929 -2.6774 2.1396 35 1 0.4400 -2.1637 1.2493 36 1 1.6762 -3.9125 -0.0001 37 1 3.1300 -2.8850 0.0001 38 1 0.4400 -2.1637 -1.2491 39 1 1.8936 -2.6774 -2.1391 40 1 0.4437 -0.0770 -2.5443 41 1 1.8184 1.0501 -2.4548 42 1 1.4688 1.9021 -5.0681 43 1 0.3659 0.8900 -6.0311 44 1 0.1909 0.9620 -4.2612 45 1 3.0592 -1.6001 -5.8441 46 1 2.5626 1.0731 -7.2318 47 1 4.0015 0.6639 -6.2661 48 1 4.5816 -1.1420 -7.8183 49 1 4.3546 0.3647 -8.7434 50 1 5.7401 -0.2904 -11.0809 51 1 2.4681 -2.8720 -7.9561 52 1 1.1111 -2.2904 -8.9549 53 1 0.6944 -2.0438 -6.4815 54 1 0.6491 -0.4936 -7.3564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006464002.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:17 Heat of formation + Delta-G solvation = -58.914960 kcal Electronic energy + Delta-G solvation = -28953.764513 eV Core-core repulsion = 25310.074275 eV Total energy + Delta-G solvation = -3643.690238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.46667 -40.03574 -38.80047 -36.52285 -34.42667 -33.63958 -32.54428 -31.92949 -31.38866 -28.84988 -27.88446 -27.28235 -26.43142 -23.96355 -23.86350 -23.14492 -22.35792 -20.75936 -19.93946 -19.29167 -18.75943 -17.91285 -17.20002 -16.83528 -16.55512 -16.48682 -15.74401 -15.43157 -15.35506 -15.11738 -14.87995 -14.84608 -14.39566 -14.17652 -14.14281 -13.85309 -13.74259 -13.43417 -13.34735 -13.19772 -13.03287 -12.95583 -12.67147 -12.61359 -12.49693 -12.37976 -12.17557 -12.09721 -11.97452 -11.90088 -11.88603 -11.59828 -11.47616 -11.32846 -11.07587 -10.99973 -10.76729 -10.58006 -10.43566 -9.52143 -8.74456 -7.88986 -5.35314 1.47695 1.48518 1.58036 1.72091 2.08351 2.50689 3.26583 3.56570 3.64093 3.74329 3.82709 3.87407 4.04614 4.06007 4.23126 4.29321 4.34208 4.35076 4.42549 4.45143 4.52469 4.54117 4.58898 4.62902 4.67173 4.73750 4.77354 4.80657 4.84300 4.85701 4.94332 4.98490 5.03757 5.05022 5.08286 5.12737 5.14138 5.23888 5.24402 5.27541 5.31465 5.36575 5.43233 5.45569 5.52573 5.61941 5.63000 5.65576 5.68266 5.74422 6.36531 6.54405 7.11594 7.29232 7.81727 8.35149 9.18255 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.032327 B = 0.002467 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.936455 B =11345.173210 C =11532.916010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.062 4.062 9 H 0.048 0.952 10 C -0.125 4.125 11 C 0.501 3.499 12 O -0.586 6.586 13 N -0.611 5.611 14 C 0.070 3.930 15 C 0.154 3.846 16 C -0.125 4.125 17 C 0.181 3.819 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.143 3.857 28 C -0.120 4.120 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.053 0.947 48 H -0.014 1.014 49 H 0.060 0.940 50 H 0.250 0.750 51 H 0.004 0.996 52 H 0.064 0.936 53 H 0.070 0.930 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 4.708 24.041 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.081 4.081 9 H 0.067 0.933 10 C -0.164 4.164 11 C 0.292 3.708 12 O -0.466 6.466 13 N -0.342 5.342 14 C -0.072 4.072 15 C 0.050 3.950 16 C -0.165 4.165 17 C 0.055 3.945 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.799 3.201 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.017 3.983 28 C -0.160 4.160 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.004 0.996 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.022 0.978 52 H 0.082 0.918 53 H 0.089 0.911 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.569 4.256 24.012 27.435 hybrid contribution 0.897 -0.043 -1.370 1.638 sum -11.673 4.213 22.642 25.819 Atomic orbital electron populations 1.21994 0.94168 1.02262 1.02435 1.21105 0.96834 0.98949 0.93134 0.90450 1.21560 1.00101 0.95673 0.97829 1.21555 1.01301 0.95640 0.96877 1.21490 0.99917 0.98950 0.95197 1.21661 1.00488 0.95557 0.97836 1.20864 0.99279 0.94805 0.93202 0.93320 1.21869 1.02913 1.01448 0.90210 1.21550 0.80810 0.82972 0.85513 1.90650 1.38393 1.30780 1.86802 1.48170 1.46661 1.34124 1.05275 1.22028 0.93100 0.87602 1.04436 1.20718 0.94739 0.95128 0.84384 1.22253 0.99104 0.98315 0.96852 1.20516 0.89180 0.94720 0.90106 1.44347 1.35624 1.47048 1.06156 1.19562 0.93389 1.40308 0.85881 0.91002 1.25869 0.94921 1.02588 1.01486 1.70209 0.97812 1.50060 1.40414 0.85211 0.77105 0.78528 0.79272 1.20943 1.22465 1.19066 1.21008 0.92984 0.90824 0.93497 1.22144 0.97232 1.00654 0.95944 0.92344 0.91902 0.91679 0.93048 0.90646 0.91856 0.90904 0.92358 0.93707 0.91233 0.93541 0.86399 0.86960 0.91747 0.90769 0.87988 0.92143 0.91381 0.92852 0.99566 0.92174 0.94100 0.97762 0.91774 0.91148 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.15 71.98 0.59 -0.95 16 2 C -0.08 -1.08 2.72 -10.79 -0.03 -1.11 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.53 5.45 30.60 0.17 -1.36 16 5 C -0.12 -1.65 5.65 30.59 0.17 -1.48 16 6 C -0.12 -2.26 5.92 30.59 0.18 -2.08 16 7 C -0.12 -2.51 4.67 30.60 0.14 -2.37 16 8 C -0.06 -1.19 1.61 -10.79 -0.02 -1.21 16 9 H 0.05 1.21 7.95 -2.39 -0.02 1.19 16 10 C -0.13 -2.19 3.22 29.85 0.10 -2.09 16 11 C 0.50 14.07 7.39 87.66 0.65 14.72 16 12 O -0.59 -22.00 13.29 -3.05 -0.04 -22.04 16 13 N -0.61 -16.69 2.76 -822.45 -2.27 -18.96 16 14 C 0.07 1.27 9.33 127.77 1.19 2.46 16 15 C 0.15 5.48 2.48 45.02 0.11 5.60 16 16 C -0.13 -4.90 5.34 30.67 0.16 -4.73 16 17 C 0.18 9.13 5.31 86.36 0.46 9.59 16 18 N -0.61 -31.13 2.99 -699.07 -2.09 -33.22 16 19 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 20 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 22 N -0.94 -56.70 11.19 21.65 0.24 -56.46 16 23 Si 0.97 44.82 29.59 68.60 2.03 46.85 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 C 0.14 6.10 6.52 86.36 0.56 6.67 16 28 C -0.12 -4.08 5.31 30.67 0.16 -3.92 16 29 H 0.06 0.65 4.81 -2.39 -0.01 0.64 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.54 6.54 -2.39 -0.02 0.53 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.91 6.43 -2.39 -0.02 0.89 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.26 6.43 -2.39 -0.02 1.25 16 39 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 40 H 0.12 1.48 5.97 -2.39 -0.01 1.47 16 41 H 0.11 1.51 8.11 -2.39 -0.02 1.49 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.41 6.45 -2.39 -0.02 1.39 16 44 H 0.10 1.12 6.44 -2.39 -0.02 1.11 16 45 H 0.06 2.59 6.90 -2.39 -0.02 2.57 16 46 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 49 H 0.06 3.38 6.04 -2.39 -0.01 3.36 16 50 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 51 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 52 H 0.06 2.60 7.93 -2.38 -0.02 2.58 16 53 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 54 H 0.07 2.37 6.72 -2.38 -0.02 2.35 16 Total: -1.00 -70.41 389.01 4.54 -65.87 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.85 Total: 16.42 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.82 Total: 1.55 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -4.12 Total: -108.64 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.04 Total: -22.04 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.41 4.54 -65.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006464002.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.953 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds