Wall clock time and date at job start Tue Mar 31 2020 15:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47377 * 2 1 4 4 C 1.52994 * 109.47102 * 239.99009 * 2 1 3 5 5 C 1.52993 * 109.47528 * 300.00351 * 4 2 1 6 6 C 1.52998 * 109.47036 * 299.99968 * 5 4 2 7 7 C 1.52994 * 109.47162 * 59.99986 * 6 5 4 8 8 C 1.52998 * 109.46914 * 119.99376 * 2 1 3 9 9 H 1.08999 * 109.47559 * 179.97438 * 8 2 1 10 10 C 1.53006 * 109.47399 * 299.99875 * 8 2 1 11 11 C 1.50697 * 109.47342 * 184.99852 * 10 8 2 12 12 O 1.21283 * 120.00112 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00166 * 179.97438 * 11 10 8 14 14 C 1.46498 * 119.99583 * 359.97438 * 13 11 10 15 15 C 1.46498 * 120.00231 * 180.02562 * 13 11 10 16 16 C 1.53041 * 109.46086 * 240.06865 * 15 13 11 17 17 C 1.53190 * 109.30958 * 178.61358 * 16 15 13 18 18 N 1.46924 * 108.77970 * 54.63648 * 17 16 15 19 19 C 1.36935 * 120.63450 * 126.40715 * 18 17 16 20 20 H 1.08002 * 120.00263 * 207.66297 * 19 18 17 21 21 C 1.38816 * 120.00039 * 27.66281 * 19 18 17 22 22 N 1.31623 * 119.99733 * 17.37082 * 21 19 18 23 23 Si 1.86789 * 120.00361 * 197.37888 * 21 19 18 24 24 H 1.48502 * 109.47126 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47350 * 119.99751 * 23 21 19 26 26 H 1.48503 * 109.47178 * 239.99782 * 23 21 19 27 27 C 1.46927 * 118.73564 * 306.39113 * 18 17 16 28 28 C 1.53042 * 109.46305 * 119.99813 * 15 13 11 29 29 H 1.08993 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46829 * 300.00505 * 1 2 3 31 31 H 1.08995 * 109.46828 * 60.00097 * 1 2 3 32 32 H 1.09004 * 109.47024 * 60.00476 * 4 2 1 33 33 H 1.08994 * 109.47158 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47152 * 60.00006 * 5 4 2 35 35 H 1.08998 * 109.47267 * 179.97438 * 5 4 2 36 36 H 1.08991 * 109.47254 * 299.99560 * 6 5 4 37 37 H 1.09005 * 109.47209 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.47249 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47755 * 60.00134 * 7 6 5 40 40 H 1.09002 * 109.46948 * 305.00222 * 10 8 2 41 41 H 1.09000 * 109.46756 * 64.99792 * 10 8 2 42 42 H 1.09006 * 109.46856 * 90.00446 * 14 13 11 43 43 H 1.09004 * 109.46968 * 210.00060 * 14 13 11 44 44 H 1.08997 * 109.47772 * 329.99928 * 14 13 11 45 45 H 1.09004 * 109.46050 * 0.03158 * 15 13 11 46 46 H 1.08998 * 109.49473 * 298.56305 * 16 15 13 47 47 H 1.08996 * 109.49684 * 58.66178 * 16 15 13 48 48 H 1.08999 * 109.58922 * 294.84718 * 17 16 15 49 49 H 1.09000 * 109.58430 * 174.42201 * 17 16 15 50 50 H 0.97002 * 120.00294 * 179.97438 * 22 21 19 51 51 H 1.09004 * 109.58452 * 293.81920 * 27 18 17 52 52 H 1.09001 * 109.58631 * 173.39563 * 27 18 17 53 53 H 1.09005 * 109.49521 * 301.34058 * 28 15 13 54 54 H 1.09001 * 109.49627 * 61.42922 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0400 -2.8850 0.0004 7 6 1.5299 -2.1636 1.2495 8 6 2.0400 -0.7211 1.2493 9 1 3.1300 -0.7216 1.2492 10 6 1.5300 0.0003 2.4986 11 6 2.1308 -0.6349 3.7260 12 8 2.8923 -1.5721 3.6128 13 7 1.8227 -0.1610 4.9494 14 6 0.9042 0.9720 5.0860 15 6 2.4072 -0.7782 6.1426 16 6 1.2890 -1.3173 7.0376 17 6 1.9051 -1.9924 8.2670 18 7 2.8020 -1.0370 8.9314 19 6 2.6575 -0.7548 10.2636 20 1 2.9678 0.2052 10.6490 21 6 2.1123 -1.7027 11.1187 22 7 2.0506 -2.9645 10.7490 23 14 1.4661 -1.1877 12.7939 24 1 1.6507 0.2756 12.9672 25 1 0.0219 -1.5198 12.8909 26 1 2.2124 -1.9095 13.8557 27 6 3.8570 -0.3903 8.1394 28 6 3.2191 0.2668 6.9114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2077 -2.1392 33 1 3.1300 -0.7210 -1.2493 34 1 0.4400 -2.1639 -1.2490 35 1 1.8930 -2.6777 -2.1391 36 1 3.1299 -2.8851 0.0004 37 1 1.6770 -3.9128 0.0002 38 1 1.8929 -2.6776 2.1396 39 1 0.4400 -2.1636 1.2495 40 1 1.8184 1.0505 2.4548 41 1 0.4437 -0.0766 2.5444 42 1 -0.1179 0.6028 5.1718 43 1 1.1607 1.5421 5.9790 44 1 0.9862 1.6141 4.2091 45 1 3.0606 -1.5981 5.8443 46 1 0.6496 -0.4942 7.3566 47 1 0.6968 -2.0443 6.4818 48 1 2.4717 -2.8702 7.9564 49 1 1.1140 -2.2902 8.9551 50 1 1.6700 -3.6270 11.3466 51 1 4.5829 -1.1375 7.8184 52 1 4.3539 0.3690 8.7434 53 1 4.0008 0.6673 6.2658 54 1 2.5616 1.0750 7.2316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006464006.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:22 Heat of formation + Delta-G solvation = -58.889458 kcal Electronic energy + Delta-G solvation = -28965.971402 eV Core-core repulsion = 25322.282270 eV Total energy + Delta-G solvation = -3643.689132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46498 -40.03689 -38.80101 -36.52200 -34.42523 -33.63988 -32.54583 -31.93348 -31.38648 -28.85364 -27.88183 -27.28505 -26.43195 -23.95103 -23.87872 -23.14710 -22.36077 -20.75872 -19.93872 -19.28597 -18.76013 -17.90638 -17.22218 -16.74578 -16.64020 -16.49607 -15.73566 -15.41367 -15.37889 -15.12491 -14.87403 -14.81346 -14.40919 -14.17917 -14.14969 -13.86532 -13.74995 -13.42685 -13.28490 -13.18487 -13.06023 -13.01239 -12.66666 -12.63604 -12.49796 -12.38359 -12.14031 -12.10842 -11.96192 -11.90952 -11.87202 -11.59596 -11.47849 -11.32451 -11.08059 -11.00557 -10.76827 -10.58742 -10.43312 -9.52100 -8.74266 -7.89117 -5.35185 1.46690 1.48181 1.59308 1.72316 2.08566 2.50633 3.26690 3.56837 3.64119 3.73767 3.82582 3.87411 4.02950 4.07035 4.24278 4.30231 4.32089 4.37054 4.43053 4.44497 4.52388 4.53757 4.56890 4.63425 4.70036 4.72636 4.75514 4.80645 4.84512 4.85375 4.93667 4.99123 5.03665 5.05380 5.08262 5.12593 5.13971 5.23665 5.24214 5.27521 5.31257 5.36490 5.43232 5.45409 5.52541 5.62018 5.62595 5.65614 5.68319 5.74168 6.36592 6.54586 7.11595 7.29429 7.81714 8.35116 9.18286 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002505 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.254373 B =11176.304142 C =11394.137613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.062 4.062 9 H 0.052 0.948 10 C -0.125 4.125 11 C 0.501 3.499 12 O -0.586 6.586 13 N -0.611 5.611 14 C 0.070 3.930 15 C 0.154 3.846 16 C -0.125 4.125 17 C 0.182 3.818 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.289 1.289 26 H -0.295 1.295 27 C 0.143 3.857 28 C -0.120 4.120 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.053 0.947 48 H -0.014 1.014 49 H 0.060 0.940 50 H 0.250 0.750 51 H 0.004 0.996 52 H 0.064 0.936 53 H 0.070 0.930 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 10.728 -24.577 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.081 4.081 9 H 0.070 0.930 10 C -0.165 4.165 11 C 0.292 3.708 12 O -0.466 6.466 13 N -0.342 5.342 14 C -0.072 4.072 15 C 0.050 3.950 16 C -0.165 4.165 17 C 0.055 3.945 18 N -0.332 5.332 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.216 1.216 26 H -0.222 1.222 27 C 0.017 3.983 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.004 0.996 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.022 0.978 52 H 0.082 0.918 53 H 0.088 0.912 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.452 10.152 -24.543 27.113 hybrid contribution 0.090 -0.737 1.447 1.627 sum -5.362 9.414 -23.096 25.510 Atomic orbital electron populations 1.21997 0.94400 1.02134 1.02411 1.21105 0.96645 0.99085 0.93108 0.90115 1.21554 1.00205 0.95503 0.97837 1.21556 1.01219 0.95809 0.96834 1.21484 1.00011 0.98847 0.95177 1.21664 1.00351 0.95847 0.97820 1.20861 0.99423 0.94549 0.93218 0.92951 1.21876 1.02778 1.01609 0.90210 1.21552 0.80746 0.83024 0.85528 1.90649 1.38476 1.30686 1.86819 1.48170 1.46724 1.34081 1.05261 1.22033 0.92763 0.87875 1.04509 1.20717 0.94480 0.95464 0.84314 1.22247 0.97599 1.00211 0.96430 1.20508 0.92962 0.89422 0.91595 1.44354 1.32912 1.49804 1.06113 1.19586 1.37654 0.97276 0.84517 0.91009 1.25870 1.02923 0.94625 1.01487 1.70218 1.49198 1.00979 1.38095 0.85163 0.77407 0.78208 0.79393 1.18688 1.21594 1.22182 1.21009 0.90113 0.95057 0.92162 1.22144 0.99379 0.97967 0.96501 0.92602 0.91757 0.91845 0.90609 0.92820 0.91104 0.91809 0.93491 0.92589 0.93715 0.91577 0.86422 0.86891 0.91754 0.90780 0.87949 0.92159 0.91371 0.92851 0.99591 0.92177 0.94108 0.97772 0.91768 0.91159 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.15 71.98 0.59 -1.04 16 2 C -0.08 -1.05 2.72 -10.79 -0.03 -1.08 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.49 5.45 30.59 0.17 -1.33 16 5 C -0.12 -1.70 5.65 30.59 0.17 -1.53 16 6 C -0.12 -2.32 5.92 30.59 0.18 -2.14 16 7 C -0.12 -2.65 4.67 30.59 0.14 -2.51 16 8 C -0.06 -1.17 1.61 -10.79 -0.02 -1.19 16 9 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 10 C -0.13 -2.19 3.22 29.85 0.10 -2.09 16 11 C 0.50 14.05 7.39 87.66 0.65 14.70 16 12 O -0.59 -21.99 13.29 -3.04 -0.04 -22.03 16 13 N -0.61 -16.67 2.76 -822.44 -2.27 -18.94 16 14 C 0.07 1.26 9.33 127.77 1.19 2.46 16 15 C 0.15 5.48 2.48 45.02 0.11 5.59 16 16 C -0.12 -4.87 5.34 30.67 0.16 -4.71 16 17 C 0.18 9.14 5.31 86.36 0.46 9.59 16 18 N -0.61 -31.13 2.99 -699.11 -2.09 -33.22 16 19 C -0.26 -14.33 9.59 84.03 0.81 -13.52 16 20 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 22 N -0.94 -56.64 11.19 21.65 0.24 -56.40 16 23 Si 0.97 44.80 29.59 68.60 2.03 46.83 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C 0.14 6.10 6.52 86.36 0.56 6.66 16 28 C -0.12 -4.09 5.31 30.67 0.16 -3.93 16 29 H 0.06 0.68 4.81 -2.39 -0.01 0.67 16 30 H 0.06 0.58 6.54 -2.39 -0.02 0.57 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.94 6.43 -2.39 -0.02 0.92 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.04 1.35 5.96 -2.38 -0.01 1.33 16 39 H 0.07 1.31 6.43 -2.39 -0.02 1.29 16 40 H 0.12 1.42 7.40 -2.39 -0.02 1.41 16 41 H 0.11 1.55 6.67 -2.39 -0.02 1.53 16 42 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.07 1.41 6.45 -2.39 -0.02 1.39 16 44 H 0.10 1.12 6.44 -2.39 -0.02 1.11 16 45 H 0.06 2.58 6.90 -2.39 -0.02 2.56 16 46 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 49 H 0.06 3.37 6.04 -2.39 -0.01 3.36 16 50 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 51 H 0.00 0.19 8.14 -2.38 -0.02 0.18 16 52 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 53 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 54 H 0.07 2.37 6.72 -2.39 -0.02 2.36 16 Total: -1.00 -70.46 389.02 4.54 -65.91 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.85 Total: 16.53 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.82 Total: 1.33 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.12 Total: -108.57 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.04 Total: -22.03 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -70.46 4.54 -65.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006464006.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.023 kcal (2) G-P(sol) polarization free energy of solvation -70.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds