Wall clock time and date at job start Tue Mar 31 2020 15:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47404 * 2 1 4 4 C 1.53000 * 109.47191 * 119.99756 * 2 1 3 5 5 C 1.53004 * 109.47471 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47044 * 300.00768 * 5 4 2 7 7 C 1.53002 * 109.47559 * 59.99701 * 6 5 4 8 8 C 1.52999 * 109.47376 * 239.99967 * 2 1 3 9 9 H 1.08998 * 109.47453 * 299.99968 * 8 2 1 10 10 C 1.53002 * 109.47078 * 60.00135 * 8 2 1 11 11 C 1.50700 * 109.47252 * 185.00143 * 10 8 2 12 12 O 1.21283 * 119.99652 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00314 * 179.97438 * 11 10 8 14 14 C 1.46507 * 119.99688 * 0.02562 * 13 11 10 15 15 C 1.46495 * 120.00241 * 180.02562 * 13 11 10 16 16 C 1.53046 * 109.45727 * 239.99959 * 15 13 11 17 17 C 1.53192 * 109.31130 * 178.61377 * 16 15 13 18 18 N 1.46923 * 108.77454 * 54.63358 * 17 16 15 19 19 C 1.36938 * 120.62742 * 126.37385 * 18 17 16 20 20 H 1.08000 * 119.99990 * 332.02836 * 19 18 17 21 21 C 1.38816 * 120.00217 * 151.76670 * 19 18 17 22 22 N 1.31621 * 119.99781 * 343.33561 * 21 19 18 23 23 Si 1.86796 * 120.00025 * 163.33960 * 21 19 18 24 24 H 1.48502 * 109.47288 * 90.00032 * 23 21 19 25 25 H 1.48505 * 109.47027 * 209.99567 * 23 21 19 26 26 H 1.48492 * 109.47450 * 329.99839 * 23 21 19 27 27 C 1.46929 * 118.74252 * 306.64338 * 18 17 16 28 28 C 1.52754 * 109.00389 * 53.31013 * 27 18 17 29 29 H 1.09003 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47269 * 299.99903 * 1 2 3 31 31 H 1.09000 * 109.47246 * 59.99899 * 1 2 3 32 32 H 1.09007 * 109.46734 * 60.00363 * 4 2 1 33 33 H 1.08994 * 109.47510 * 300.00230 * 4 2 1 34 34 H 1.08999 * 109.47189 * 179.97438 * 5 4 2 35 35 H 1.09008 * 109.46410 * 60.00056 * 5 4 2 36 36 H 1.08998 * 109.47339 * 299.99309 * 6 5 4 37 37 H 1.09000 * 109.46965 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46781 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.47128 * 59.99992 * 7 6 5 40 40 H 1.08998 * 109.47494 * 65.00059 * 10 8 2 41 41 H 1.09005 * 109.46717 * 304.99884 * 10 8 2 42 42 H 1.08997 * 109.47195 * 270.00007 * 14 13 11 43 43 H 1.08996 * 109.47046 * 30.00079 * 14 13 11 44 44 H 1.08998 * 109.47057 * 150.00133 * 14 13 11 45 45 H 1.09005 * 109.44982 * 359.96546 * 15 13 11 46 46 H 1.09000 * 109.49666 * 58.66921 * 16 15 13 47 47 H 1.08992 * 109.52516 * 298.58040 * 16 15 13 48 48 H 1.09007 * 109.58386 * 294.84977 * 17 16 15 49 49 H 1.08996 * 109.70611 * 174.49360 * 17 16 15 50 50 H 0.96996 * 119.99953 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.58404 * 173.14466 * 27 18 17 52 52 H 1.08999 * 109.58403 * 293.56611 * 27 18 17 53 53 H 1.09003 * 109.56366 * 185.55611 * 28 27 18 54 54 H 1.09000 * 109.39171 * 65.51499 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4433 -0.0002 7 6 3.5695 -0.7220 -1.2495 8 6 2.0400 -0.7212 -1.2492 9 1 1.6767 -1.7489 -1.2493 10 6 1.5300 0.0000 -2.4985 11 6 1.9287 -0.7783 -3.7258 12 8 2.5591 -1.8082 -3.6125 13 7 1.5848 -0.3299 -4.9494 14 6 0.8238 0.9145 -5.0862 15 6 1.9719 -1.0867 -6.1424 16 6 2.8517 -0.2116 -7.0381 17 6 3.2830 -1.0175 -8.2675 18 7 2.0834 -1.5459 -8.9311 19 6 1.8643 -1.3157 -10.2631 20 1 2.2664 -0.4293 -10.7312 21 6 1.1301 -2.2242 -11.0130 22 7 0.9248 -3.4412 -10.5557 23 14 0.4335 -1.7197 -12.6712 24 1 1.4241 -2.0194 -13.7362 25 1 -0.8182 -2.4748 -12.9328 26 1 0.1408 -0.2639 -12.6629 27 6 1.1203 -2.3210 -8.1371 28 6 0.7161 -1.5052 -6.9105 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6766 -1.7489 1.2492 33 1 1.6766 -0.2074 2.1392 34 1 3.9333 -1.2352 2.1392 35 1 3.9336 0.3059 1.2488 36 1 3.7158 -2.4708 -0.0001 37 1 5.1694 -1.4433 -0.0006 38 1 3.9329 -1.2359 -2.1394 39 1 3.9332 0.3055 -1.2497 40 1 1.9646 0.9986 -2.5444 41 1 0.4437 0.0782 -2.4548 42 1 -0.2431 0.6919 -5.0680 43 1 1.0695 1.5833 -4.2613 44 1 1.0787 1.3943 -6.0312 45 1 2.5280 -1.9754 -5.8439 46 1 3.7346 0.1052 -6.4829 47 1 2.2885 0.6652 -7.3572 48 1 3.9226 -1.8436 -7.9569 49 1 3.8279 -0.3727 -8.9570 50 1 0.4114 -4.0760 -11.0795 51 1 0.2374 -2.5339 -8.7398 52 1 1.5800 -3.2556 -7.8158 53 1 0.0788 -2.1090 -6.2644 54 1 0.1721 -0.6164 -7.2302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006464009.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:27 Heat of formation + Delta-G solvation = -62.548179 kcal Electronic energy + Delta-G solvation = -28879.130653 eV Core-core repulsion = 25235.282866 eV Total energy + Delta-G solvation = -3643.847786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.42207 -39.86259 -38.73930 -36.51782 -34.45744 -33.87231 -32.90163 -31.94939 -31.39565 -28.74341 -27.88363 -27.07612 -26.37814 -23.98202 -23.86743 -22.82288 -21.84482 -20.76678 -20.58199 -19.90308 -18.75921 -17.91958 -17.18091 -16.79505 -16.56179 -15.88894 -15.70143 -15.42982 -15.40075 -15.08655 -14.92533 -14.85715 -14.72168 -14.25072 -14.14697 -13.88361 -13.71177 -13.33181 -13.22110 -13.16244 -13.02087 -12.87210 -12.63120 -12.60275 -12.52640 -12.42843 -12.28869 -12.11749 -12.00287 -11.89614 -11.81533 -11.68507 -11.47667 -11.32174 -11.26564 -11.05031 -10.78592 -10.57946 -10.42983 -9.52120 -8.73026 -7.89071 -5.35733 1.47289 1.48325 1.58600 1.72027 2.08274 2.50769 3.27102 3.56325 3.64036 3.72717 3.82146 3.87218 4.03920 4.06012 4.18973 4.28632 4.29129 4.35521 4.42143 4.44947 4.50141 4.58602 4.61719 4.64543 4.67549 4.73966 4.75510 4.79275 4.84530 4.86759 4.91856 4.98468 5.01903 5.04019 5.06351 5.10666 5.13179 5.24356 5.25537 5.27631 5.32994 5.35053 5.41478 5.44026 5.52684 5.59118 5.62100 5.65209 5.67931 5.70142 6.36898 6.54325 7.11914 7.29163 7.81828 8.35509 9.18398 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.002492 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.239969 B =11234.667330 C =11497.470710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.062 4.062 9 H 0.048 0.952 10 C -0.127 4.127 11 C 0.501 3.499 12 O -0.586 6.586 13 N -0.611 5.611 14 C 0.070 3.930 15 C 0.154 3.846 16 C -0.120 4.120 17 C 0.143 3.857 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.182 3.818 28 C -0.125 4.125 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.004 0.996 49 H 0.064 0.936 50 H 0.250 0.750 51 H 0.059 0.941 52 H -0.014 1.014 53 H 0.053 0.947 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 13.518 24.058 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.081 4.081 9 H 0.067 0.933 10 C -0.167 4.167 11 C 0.292 3.708 12 O -0.466 6.466 13 N -0.342 5.342 14 C -0.072 4.072 15 C 0.050 3.950 16 C -0.160 4.160 17 C 0.017 3.983 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.089 0.911 21 C -0.248 4.248 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.191 1.191 27 C 0.056 3.944 28 C -0.165 4.165 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.022 0.978 49 H 0.082 0.918 50 H 0.059 0.941 51 H 0.077 0.923 52 H 0.004 0.996 53 H 0.072 0.928 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.479 12.885 24.035 27.275 hybrid contribution -0.196 -0.857 -1.397 1.650 sum -0.675 12.028 22.638 25.644 Atomic orbital electron populations 1.21927 0.94634 1.01650 1.02638 1.21129 0.95853 0.99726 0.93147 0.89810 1.21589 0.95321 1.00361 0.97810 1.21525 0.95876 1.00893 0.96970 1.21496 1.00018 0.98931 0.95142 1.21635 0.95416 1.00542 0.97982 1.20878 0.95316 0.98668 0.93196 0.93315 1.21904 1.04199 1.00331 0.90219 1.21537 0.78316 0.85458 0.85500 1.90648 1.42187 1.27003 1.86797 1.48169 1.55288 1.25504 1.05269 1.22034 0.95983 0.84725 1.04450 1.20715 0.95358 0.94500 0.84387 1.22140 0.99204 0.98687 0.95939 1.21006 0.88614 0.95192 0.93500 1.44319 1.20277 1.62487 1.06086 1.19544 1.31269 1.02607 0.85816 0.91051 1.25890 1.02973 0.94488 1.01482 1.70209 1.43716 1.04398 1.40155 0.85232 0.77339 0.78026 0.79571 1.21233 1.21991 1.19052 1.20403 0.93343 0.90579 0.90099 1.22179 0.96962 1.00527 0.96854 0.93706 0.91543 0.91533 0.93108 0.90578 0.91657 0.91208 0.93662 0.92286 0.93366 0.91555 0.86483 0.86746 0.91720 0.87965 0.90776 0.92147 0.91160 0.90719 0.97805 0.91784 0.94099 0.92264 0.99636 0.92806 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.85 71.98 0.64 -1.10 16 2 C -0.08 -1.06 2.25 -10.80 -0.02 -1.08 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.52 5.20 30.60 0.16 -1.36 16 5 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 6 C -0.12 -2.27 5.92 30.59 0.18 -2.08 16 7 C -0.12 -2.53 4.94 30.58 0.15 -2.38 16 8 C -0.06 -1.18 1.36 -10.81 -0.01 -1.19 16 9 H 0.05 1.22 7.95 -2.39 -0.02 1.20 16 10 C -0.13 -2.24 3.51 29.85 0.10 -2.13 16 11 C 0.50 14.10 7.39 87.66 0.65 14.74 16 12 O -0.59 -22.03 13.29 -3.04 -0.04 -22.07 16 13 N -0.61 -16.70 2.76 -822.43 -2.27 -18.97 16 14 C 0.07 1.26 9.33 127.77 1.19 2.46 16 15 C 0.15 5.49 2.49 45.02 0.11 5.61 16 16 C -0.12 -4.09 5.31 30.67 0.16 -3.93 16 17 C 0.14 6.12 6.52 86.36 0.56 6.68 16 18 N -0.61 -31.17 3.00 -699.94 -2.10 -33.26 16 19 C -0.26 -14.45 9.58 84.03 0.80 -13.65 16 20 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 21 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 22 N -0.94 -56.71 11.21 21.65 0.24 -56.47 16 23 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.18 9.17 5.27 86.22 0.45 9.63 16 28 C -0.13 -4.89 5.32 30.53 0.16 -4.73 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.65 6.32 -2.39 -0.02 0.63 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.40 5.95 -2.39 -0.01 1.38 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.12 1.45 7.40 -2.39 -0.02 1.43 16 41 H 0.11 1.57 6.14 -2.38 -0.01 1.55 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.13 6.44 -2.39 -0.02 1.11 16 44 H 0.07 1.41 6.46 -2.39 -0.02 1.39 16 45 H 0.06 2.59 6.90 -2.38 -0.02 2.57 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 47 H 0.07 2.37 6.72 -2.39 -0.02 2.36 16 48 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 49 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 50 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 51 H 0.06 3.32 6.08 -2.39 -0.01 3.31 16 52 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 53 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 54 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 Total: -1.00 -70.52 395.59 4.60 -65.93 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.84 Total: 16.57 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.89 Total: 1.46 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.13 Total: -108.70 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.07 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.52 4.60 -65.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006464009.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.377 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds