Wall clock time and date at job start Tue Mar 31 2020 15:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.54086 * 2 1 4 4 C 1.54890 * 110.48730 * 122.61194 * 2 1 3 5 5 C 1.54889 * 102.75123 * 156.62152 * 4 2 1 6 6 C 1.54275 * 104.19330 * 322.05627 * 5 4 2 7 7 C 1.53000 * 110.02735 * 142.94231 * 6 5 4 8 8 C 1.50699 * 110.03270 * 264.32521 * 6 5 4 9 9 O 1.21287 * 119.99815 * 7.69472 * 8 6 5 10 10 N 1.34769 * 119.99936 * 187.69621 * 8 6 5 11 11 C 1.46501 * 120.00039 * 179.97438 * 10 8 6 12 12 H 1.09003 * 109.52376 * 325.07902 * 11 10 8 13 13 C 1.53041 * 109.50031 * 205.00424 * 11 10 8 14 14 C 1.53031 * 109.52977 * 178.67809 * 13 11 10 15 15 C 1.53196 * 109.31510 * 61.36974 * 14 13 11 16 16 N 1.46928 * 108.77276 * 305.36708 * 15 14 13 17 17 C 1.36937 * 120.62938 * 233.62891 * 16 15 14 18 18 H 1.07998 * 120.00028 * 149.00795 * 17 16 15 19 19 C 1.38812 * 119.99936 * 329.01116 * 17 16 15 20 20 N 1.31625 * 120.00010 * 341.75451 * 19 17 16 21 21 Si 1.86798 * 119.99903 * 161.75865 * 19 17 16 22 22 H 1.48504 * 109.47169 * 89.99801 * 21 19 17 23 23 H 1.48504 * 109.47161 * 209.99460 * 21 19 17 24 24 H 1.48496 * 109.47320 * 329.99892 * 21 19 17 25 25 C 1.46926 * 118.73841 * 53.60704 * 16 15 14 26 26 C 1.53873 * 106.59814 * 23.61004 * 6 5 4 27 27 C 1.52999 * 110.02929 * 119.28110 * 26 6 5 28 28 C 1.52990 * 110.03210 * 240.71394 * 26 6 5 29 29 H 1.08995 * 109.47306 * 298.83988 * 1 2 3 30 30 H 1.08996 * 109.47313 * 58.84443 * 1 2 3 31 31 H 1.09002 * 109.46867 * 178.83983 * 1 2 3 32 32 H 1.09004 * 110.75253 * 38.30525 * 4 2 1 33 33 H 1.08999 * 110.91362 * 275.01181 * 4 2 1 34 34 H 1.09000 * 110.48507 * 203.38375 * 5 4 2 35 35 H 1.08995 * 110.48606 * 80.73357 * 5 4 2 36 36 H 1.09004 * 109.46496 * 182.09021 * 7 6 5 37 37 H 1.08992 * 109.47413 * 302.09057 * 7 6 5 38 38 H 1.09004 * 109.46824 * 62.09825 * 7 6 5 39 39 H 0.96998 * 120.00260 * 0.02562 * 10 8 6 40 40 H 1.09000 * 109.45976 * 58.66136 * 13 11 10 41 41 H 1.08998 * 109.45922 * 298.69432 * 13 11 10 42 42 H 1.09006 * 109.50350 * 181.32483 * 14 13 11 43 43 H 1.09006 * 109.50168 * 301.41661 * 14 13 11 44 44 H 1.08995 * 109.58522 * 65.15148 * 15 14 13 45 45 H 1.09005 * 109.58645 * 185.58026 * 15 14 13 46 46 H 0.96994 * 119.99531 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.58704 * 66.17828 * 25 16 15 48 48 H 1.09005 * 109.58203 * 186.46071 * 25 16 15 49 49 H 1.09005 * 109.46980 * 60.00616 * 27 26 6 50 50 H 1.09001 * 109.47096 * 179.97438 * 27 26 6 51 51 H 1.08992 * 109.47589 * 300.00201 * 27 26 6 52 52 H 1.08999 * 109.47562 * 54.66300 * 28 26 6 53 53 H 1.09001 * 109.47416 * 174.65911 * 28 26 6 54 54 H 1.08999 * 109.47424 * 294.65874 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1979 0.7600 6 6 3.3165 -1.5406 -0.7341 7 6 4.5470 -1.0876 -1.5224 8 6 3.1128 -3.0241 -0.9031 9 8 2.9656 -3.7310 0.0714 10 7 3.0942 -3.5654 -2.1372 11 6 2.8968 -5.0077 -2.3016 12 1 3.3771 -5.5373 -1.4788 13 6 3.5118 -5.4597 -3.6280 14 6 3.3350 -6.9716 -3.7851 15 6 1.8405 -7.3075 -3.8059 16 7 1.2135 -6.7486 -2.6004 17 6 0.4722 -7.5433 -1.7671 18 1 0.4353 -7.3300 -0.7091 19 6 -0.2316 -8.6231 -2.2825 20 7 -0.4894 -8.6858 -3.5717 21 14 -0.8130 -9.9870 -1.1463 22 1 -2.1702 -9.6630 -0.6380 23 1 -0.8577 -11.2691 -1.8943 24 1 0.1265 -10.1133 -0.0032 25 6 1.3973 -5.3210 -2.3056 26 6 2.0699 -0.7789 -1.2173 27 6 2.4507 0.1939 -2.3350 28 6 1.0139 -1.7662 -1.7181 29 1 -0.3634 0.4957 0.9002 30 1 -0.3634 0.5316 -0.8794 31 1 -0.3633 -1.0275 -0.0208 32 1 1.4580 -1.6601 1.4222 33 1 2.1249 -0.1408 2.1021 34 1 3.8315 -2.0722 1.3147 35 1 4.1897 -0.3707 0.8827 36 1 4.3987 -1.3003 -2.5812 37 1 4.6932 -0.0165 -1.3840 38 1 5.4258 -1.6237 -1.1638 39 1 3.2123 -3.0002 -2.9166 40 1 4.5741 -5.2153 -3.6377 41 1 3.0142 -4.9483 -4.4520 42 1 3.7939 -7.2966 -4.7189 43 1 3.8112 -7.4826 -2.9482 44 1 1.3803 -6.8717 -4.6926 45 1 1.7093 -8.3896 -3.8178 46 1 -0.9815 -9.4402 -3.9317 47 1 0.9009 -4.7232 -3.0700 48 1 0.9713 -5.0919 -1.3288 49 1 2.8774 -0.3614 -3.1703 50 1 1.5616 0.7279 -2.6706 51 1 3.1842 0.9080 -1.9610 52 1 0.8007 -2.4970 -0.9379 53 1 0.1011 -1.2258 -1.9689 54 1 1.3875 -2.2793 -2.6042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008762120.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:27 Heat of formation + Delta-G solvation = -53.254778 kcal Electronic energy + Delta-G solvation = -30320.608974 eV Core-core repulsion = 26677.164180 eV Total energy + Delta-G solvation = -3643.444794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.25683 -39.81270 -38.56257 -36.00358 -34.46104 -33.78426 -33.02297 -32.34932 -30.34129 -29.06899 -28.28015 -27.25638 -25.21144 -24.53884 -24.00586 -23.86200 -22.21228 -21.24983 -20.51054 -19.10861 -18.72380 -17.54417 -17.28217 -16.73438 -16.52673 -16.24910 -15.80829 -15.52514 -15.33365 -14.96441 -14.74703 -14.51047 -14.32352 -14.20439 -14.19553 -14.01961 -13.81304 -13.47793 -13.31158 -13.21399 -13.05704 -12.77874 -12.61501 -12.52911 -12.44177 -12.17375 -12.13705 -12.00916 -12.00450 -11.75904 -11.70569 -11.59724 -11.53016 -11.34980 -11.30336 -11.26467 -11.08037 -10.65033 -10.49888 -9.98642 -8.68034 -7.94712 -5.42025 1.40519 1.41600 1.52931 1.75246 2.22044 2.48368 3.19292 3.42301 3.52540 3.61959 3.74988 3.86954 4.07091 4.10706 4.20486 4.23148 4.28891 4.35619 4.37250 4.44335 4.47760 4.54482 4.56939 4.67622 4.77722 4.78495 4.82353 4.86469 4.90137 4.92334 4.94112 4.99993 5.04625 5.09074 5.10361 5.16706 5.21324 5.21509 5.25007 5.25660 5.29239 5.29971 5.38896 5.44968 5.48904 5.57497 5.57754 5.60725 5.65273 5.71377 6.34368 6.67511 7.09959 7.39480 7.78911 8.30951 9.10802 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.003781 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.200815 B = 7404.014853 C = 8082.580367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.102 0.898 4 C -0.121 4.121 5 C -0.106 4.106 6 C -0.073 4.073 7 C -0.138 4.138 8 C 0.525 3.475 9 O -0.591 6.591 10 N -0.708 5.708 11 C 0.142 3.858 12 H 0.051 0.949 13 C -0.104 4.104 14 C -0.130 4.130 15 C 0.175 3.825 16 N -0.606 5.606 17 C -0.274 4.274 18 H 0.046 0.954 19 C -0.036 4.036 20 N -0.925 5.925 21 Si 0.962 3.038 22 H -0.283 1.283 23 H -0.282 1.282 24 H -0.277 1.277 25 C 0.154 3.846 26 C -0.045 4.045 27 C -0.138 4.138 28 C -0.150 4.150 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.411 0.589 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.007 0.993 45 H 0.046 0.954 46 H 0.253 0.747 47 H 0.018 0.982 48 H 0.021 0.979 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.081 0.919 52 H 0.019 0.981 53 H 0.069 0.931 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.946 22.703 -0.091 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.121 0.879 4 C -0.159 4.159 5 C -0.144 4.144 6 C -0.076 4.076 7 C -0.195 4.195 8 C 0.313 3.687 9 O -0.471 6.471 10 N -0.360 5.360 11 C 0.035 3.965 12 H 0.069 0.931 13 C -0.142 4.142 14 C -0.169 4.169 15 C 0.050 3.950 16 N -0.330 5.330 17 C -0.404 4.404 18 H 0.063 0.937 19 C -0.233 4.233 20 N -0.570 5.570 21 Si 0.789 3.211 22 H -0.209 1.209 23 H -0.207 1.207 24 H -0.202 1.202 25 C 0.027 3.973 26 C -0.045 4.045 27 C -0.195 4.195 28 C -0.207 4.207 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.025 0.975 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.040 0.960 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.100 0.900 52 H 0.038 0.962 53 H 0.088 0.912 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.755 22.067 0.488 24.553 hybrid contribution -1.003 -1.430 0.518 1.822 sum 9.752 20.638 1.006 22.848 Atomic orbital electron populations 1.21895 0.95354 1.00993 1.02156 1.22056 0.95363 0.99525 0.92805 0.87948 1.22529 0.95794 0.98982 0.98599 1.22354 0.98000 1.01336 0.92707 1.21581 0.98635 0.88763 0.98596 1.22066 0.94136 1.03413 0.99877 1.21094 0.73956 0.91235 0.82368 1.90686 1.51384 1.64409 1.40587 1.46043 1.73270 1.08186 1.08501 1.21194 0.96065 0.80751 0.98459 0.93106 1.21604 1.01250 0.96093 0.95213 1.22017 0.97376 0.95888 1.01635 1.20646 0.89789 0.97639 0.86913 1.44186 1.57933 1.03946 1.26948 1.19279 1.22932 1.08875 0.89299 0.93664 1.25747 0.97625 1.02584 0.97357 1.70171 1.42642 1.31130 1.13020 0.85382 0.78112 0.79086 0.78502 1.20934 1.20727 1.20221 1.21127 0.94255 0.85256 0.96681 1.21149 0.91962 0.94762 0.96673 1.22043 1.02253 0.98367 0.96801 1.22256 0.99859 0.98427 1.00135 0.92213 0.91429 0.94542 0.94806 0.90040 0.93233 0.88203 0.90553 0.88446 0.92976 0.75123 0.89427 0.90584 0.89534 0.93535 0.97504 0.93519 0.93753 0.96441 0.96048 0.91416 0.91990 0.90031 0.96154 0.91203 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 7.97 71.98 0.57 -2.16 16 2 C -0.08 -1.38 2.91 -9.72 -0.03 -1.40 16 3 H 0.10 1.27 7.84 -2.39 -0.02 1.25 16 4 C -0.12 -2.66 6.33 31.89 0.20 -2.45 16 5 C -0.11 -2.31 5.65 31.67 0.18 -2.13 16 6 C -0.07 -1.52 0.82 -52.20 -0.04 -1.56 16 7 C -0.14 -1.87 7.00 71.98 0.50 -1.37 16 8 C 0.53 16.31 4.52 87.66 0.40 16.71 16 9 O -0.59 -25.10 15.14 -3.05 -0.05 -25.14 16 10 N -0.71 -20.03 3.43 -442.17 -1.52 -21.55 16 11 C 0.14 5.20 2.60 45.07 0.12 5.32 16 12 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 13 C -0.10 -3.13 5.35 30.62 0.16 -2.97 16 14 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 15 C 0.18 8.52 5.30 86.36 0.46 8.98 16 16 N -0.61 -32.56 2.97 -699.09 -2.08 -34.64 16 17 C -0.27 -16.40 9.54 84.03 0.80 -15.60 16 18 H 0.05 2.81 7.89 -2.91 -0.02 2.78 16 19 C -0.04 -2.13 4.85 84.86 0.41 -1.72 16 20 N -0.93 -55.85 11.50 21.65 0.25 -55.60 16 21 Si 0.96 47.12 29.59 68.60 2.03 49.15 16 22 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 C 0.15 7.10 6.09 86.36 0.53 7.63 16 26 C -0.05 -0.82 0.86 -51.46 -0.04 -0.86 16 27 C -0.14 -1.56 7.21 71.98 0.52 -1.04 16 28 C -0.15 -3.72 5.99 71.98 0.43 -3.29 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.06 7.83 -2.39 -0.02 1.05 16 31 H 0.04 0.87 6.43 -2.39 -0.02 0.85 16 32 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.41 6.96 -2.39 -0.02 1.39 16 35 H 0.10 1.52 7.84 -2.39 -0.02 1.51 16 36 H 0.08 0.83 5.83 -2.39 -0.01 0.81 16 37 H 0.10 0.83 6.68 -2.39 -0.02 0.81 16 38 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.41 8.56 6.84 -92.71 -0.63 7.93 16 40 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.05 2.56 6.33 -2.38 -0.02 2.54 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 1.10 7.93 -2.38 -0.02 1.08 16 49 H 0.07 0.67 6.76 -2.38 -0.02 0.66 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.08 0.62 6.70 -2.39 -0.02 0.61 16 52 H 0.02 0.66 6.84 -2.39 -0.02 0.65 16 53 H 0.07 1.58 6.53 -2.39 -0.02 1.56 16 54 H 0.06 1.49 5.97 -2.39 -0.01 1.48 16 Total: -1.00 -75.23 389.62 4.22 -71.01 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.23 Total: 19.23 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 5.35 Total: -2.46 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -3.35 Total: -111.79 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -75.23 4.22 -71.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008762120.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.755 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds