Wall clock time and date at job start Tue Mar 31 2020 15:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00585 * 2 1 3 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 7 7 C 1.52999 * 109.46623 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47526 * 294.99769 * 7 5 4 9 9 O 1.21279 * 119.99414 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99911 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99721 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85294 * 336.19685 * 11 10 8 13 13 C 1.53777 * 113.61225 * 107.50315 * 11 10 8 14 14 C 1.53785 * 87.08163 * 89.11660 * 13 11 10 15 15 H 1.08996 * 113.68947 * 270.87456 * 14 13 11 16 16 N 1.46498 * 113.61607 * 139.97713 * 14 13 11 17 17 C 1.36942 * 120.00080 * 107.50059 * 16 14 13 18 18 H 1.08001 * 119.99520 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00180 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00207 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47083 * 119.99855 * 21 19 17 24 24 H 1.48498 * 109.47391 * 239.99669 * 21 19 17 25 25 C 1.53782 * 113.61362 * 205.00412 * 11 10 8 26 26 C 1.52997 * 109.47127 * 299.99539 * 5 4 2 27 27 C 1.53002 * 109.46817 * 60.00361 * 26 5 4 28 28 C 1.52997 * 109.47415 * 59.99873 * 27 26 5 29 29 C 1.52997 * 109.46817 * 180.02562 * 27 26 5 30 30 C 1.52996 * 109.46972 * 299.99733 * 27 26 5 31 31 H 1.09000 * 109.46866 * 299.99600 * 1 2 3 32 32 H 1.09001 * 109.47372 * 60.00008 * 1 2 3 33 33 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47839 * 60.00073 * 4 2 1 35 35 H 1.09000 * 109.47160 * 299.99635 * 4 2 1 36 36 H 1.09001 * 109.47317 * 55.00458 * 7 5 4 37 37 H 1.09007 * 109.46669 * 175.00116 * 7 5 4 38 38 H 0.97000 * 120.00167 * 0.02562 * 10 8 7 39 39 H 1.09001 * 113.61125 * 203.66111 * 13 11 10 40 40 H 1.08994 * 113.61807 * 334.56544 * 13 11 10 41 41 H 0.97006 * 120.00003 * 287.50408 * 16 14 13 42 42 H 0.97002 * 120.00200 * 180.02562 * 20 19 17 43 43 H 1.08996 * 113.61473 * 25.42902 * 25 11 10 44 44 H 1.09000 * 113.61707 * 156.25521 * 25 11 10 45 45 H 1.09002 * 109.47153 * 180.02562 * 26 5 4 46 46 H 1.08996 * 109.46952 * 300.00302 * 26 5 4 47 47 H 1.09002 * 109.47045 * 59.99931 * 28 27 26 48 48 H 1.08998 * 109.47171 * 179.97438 * 28 27 26 49 49 H 1.09000 * 109.47140 * 300.00024 * 28 27 26 50 50 H 1.09000 * 109.47611 * 60.00257 * 29 27 26 51 51 H 1.09001 * 109.47289 * 179.97438 * 29 27 26 52 52 H 1.09002 * 109.47153 * 299.99769 * 29 27 26 53 53 H 1.09001 * 109.46993 * 180.02562 * 30 27 26 54 54 H 1.09000 * 109.47380 * 299.99696 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7208 1.2494 6 1 3.9330 0.3071 1.2497 7 6 4.0801 -1.4416 2.4989 8 6 3.6809 -0.6632 3.7260 9 8 3.0502 0.3664 3.6124 10 7 4.0249 -1.1114 4.9497 11 6 3.6363 -0.3550 6.1427 12 1 3.4587 0.7004 5.9356 13 6 2.5152 -1.0220 6.9569 14 6 3.6218 -1.7655 7.7235 15 1 3.9078 -2.7141 7.2693 16 7 3.3658 -1.8775 9.1616 17 6 3.0147 -3.0856 9.7025 18 1 2.9270 -3.9558 9.0689 19 6 2.7717 -3.1917 11.0650 20 7 2.8781 -2.1311 11.8371 21 14 2.2935 -4.8398 11.8028 22 1 2.2423 -5.8661 10.7307 23 1 3.2989 -5.2367 12.8211 24 1 0.9585 -4.7268 12.4433 25 6 4.5533 -0.5993 7.3527 26 6 4.0806 -1.4416 0.0001 27 6 3.5705 -0.7202 -1.2490 28 6 4.0799 0.7225 -1.2487 29 6 4.0804 -1.4414 -2.4983 30 6 2.0405 -0.7208 -1.2493 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6768 -1.7490 1.2492 35 1 1.6767 -0.2076 2.1392 36 1 3.6459 -2.4403 2.5449 37 1 5.1665 -1.5194 2.4554 38 1 4.5296 -1.9347 5.0405 39 1 1.9496 -0.3242 7.5743 40 1 1.8772 -1.6784 6.3653 41 1 3.4450 -1.0960 9.7307 42 1 2.7086 -2.2053 12.7893 43 1 5.5606 -0.9147 7.0806 44 1 4.5459 0.2146 8.0777 45 1 5.1706 -1.4416 0.0005 46 1 3.7176 -2.4693 -0.0001 47 1 5.1699 0.7229 -1.2485 48 1 3.7169 1.2362 -2.1388 49 1 3.7163 1.2360 -0.3586 50 1 3.7171 -2.4691 -2.4984 51 1 3.7167 -0.9278 -3.3883 52 1 5.1705 -1.4414 -2.4983 53 1 1.6772 -0.2073 -2.1394 54 1 1.6776 -1.7486 -1.2496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020761262.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:57 Heat of formation + Delta-G solvation = -64.726585 kcal Electronic energy + Delta-G solvation = -27919.865083 eV Core-core repulsion = 24275.922834 eV Total energy + Delta-G solvation = -3643.942249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.44249 -40.51593 -39.15106 -35.76894 -34.94622 -34.42923 -33.94653 -31.80958 -28.67294 -28.13272 -27.41818 -27.09560 -26.55638 -26.29060 -23.95514 -22.47517 -21.38346 -20.93222 -20.32996 -19.41896 -19.12680 -17.97029 -17.07585 -16.65380 -16.45738 -15.98630 -15.80851 -15.72606 -15.61884 -15.37466 -14.87481 -14.64356 -14.46895 -14.12017 -13.73688 -13.59701 -13.45589 -13.35724 -13.32830 -13.16915 -12.97011 -12.84003 -12.70048 -12.56915 -12.52379 -12.44913 -12.22272 -12.10691 -11.84196 -11.78148 -11.73966 -11.63808 -11.54512 -11.18944 -11.11168 -10.95797 -10.85598 -10.76418 -10.45445 -9.93566 -8.99256 -7.95299 -5.23899 1.47550 1.48311 1.58124 1.73592 2.25698 2.56150 3.36379 3.69591 3.71363 3.73980 3.76176 3.86286 3.96264 3.98788 4.12242 4.26179 4.29659 4.32557 4.33719 4.41606 4.48750 4.58039 4.69650 4.73864 4.77825 4.79618 4.83089 4.86636 4.89684 4.90737 4.94355 4.96880 5.03060 5.05424 5.11469 5.13928 5.16679 5.20338 5.22470 5.26072 5.28852 5.30596 5.43680 5.45889 5.51178 5.56302 5.59202 5.64674 5.73796 5.77859 6.26846 6.67393 7.32822 7.37850 8.09554 8.31820 9.28165 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.002085 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.343800 B =13428.913189 C =13561.541375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.068 4.068 6 H 0.063 0.937 7 C -0.132 4.132 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.702 5.702 11 C 0.135 3.865 12 H 0.085 0.915 13 C -0.173 4.173 14 C 0.155 3.845 15 H 0.084 0.916 16 N -0.728 5.728 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.079 4.079 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.297 1.297 25 C -0.143 4.143 26 C -0.098 4.098 27 C -0.064 4.064 28 C -0.144 4.144 29 C -0.138 4.138 30 C -0.097 4.097 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.059 0.941 53 H 0.062 0.938 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 1.196 -31.316 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.086 4.086 6 H 0.081 0.919 7 C -0.171 4.171 8 C 0.298 3.702 9 O -0.458 6.458 10 N -0.354 5.354 11 C 0.029 3.971 12 H 0.104 0.896 13 C -0.215 4.215 14 C 0.045 3.955 15 H 0.102 0.898 16 N -0.365 5.365 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.224 1.224 25 C -0.183 4.183 26 C -0.135 4.135 27 C -0.064 4.064 28 C -0.202 4.202 29 C -0.195 4.195 30 C -0.134 4.134 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.078 0.922 53 H 0.081 0.919 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.869 1.706 -31.381 31.665 hybrid contribution -0.436 -0.470 1.464 1.598 sum 3.432 1.236 -29.918 30.139 Atomic orbital electron populations 1.21816 0.95534 1.01741 1.01269 1.21113 0.95187 0.99429 0.95155 0.92191 1.21695 0.95410 1.00039 0.97737 1.20890 0.95288 0.99443 0.93020 0.91855 1.21824 1.04493 1.00275 0.90522 1.21400 0.78078 0.85384 0.85386 1.90655 1.41383 1.26680 1.87106 1.45702 1.57204 1.27774 1.04706 1.21430 0.95718 0.95789 0.84198 0.89643 1.24138 0.98259 1.00297 0.98805 1.21953 0.93878 0.96201 0.83498 0.89786 1.42623 1.81469 1.08640 1.03801 1.19742 1.36857 0.89085 0.91631 0.90301 1.25595 1.03794 1.00684 0.97051 1.69825 1.57912 1.29870 1.04505 0.85082 0.76748 0.79716 0.78273 1.18797 1.22041 1.22427 1.23665 0.98967 0.99469 0.96188 1.21624 1.00695 0.99015 0.92183 1.20519 0.94942 0.95522 0.95424 1.21963 1.00919 0.95859 1.01410 1.21828 1.01140 1.00149 0.96382 1.21613 0.94631 1.00419 0.96749 0.94040 0.92074 0.92538 0.92432 0.93143 0.87139 0.86346 0.74975 0.91591 0.92743 0.79454 0.94085 0.89488 0.89841 0.90875 0.91119 0.92444 0.92745 0.93224 0.92356 0.92623 0.92240 0.91937 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.19 71.98 0.66 -1.85 16 2 C -0.09 -1.59 2.45 -10.79 -0.03 -1.61 16 3 H 0.06 1.19 6.43 -2.39 -0.02 1.17 16 4 C -0.11 -2.21 4.23 30.60 0.13 -2.09 16 5 C -0.07 -1.13 1.56 -10.79 -0.02 -1.14 16 6 H 0.06 1.30 6.24 -2.39 -0.01 1.29 16 7 C -0.13 -1.99 5.18 29.85 0.15 -1.84 16 8 C 0.51 12.17 7.55 87.66 0.66 12.83 16 9 O -0.58 -18.72 13.56 -3.03 -0.04 -18.76 16 10 N -0.70 -16.11 5.26 -440.04 -2.32 -18.43 16 11 C 0.14 3.94 4.32 45.52 0.20 4.13 16 12 H 0.09 2.72 7.46 -2.39 -0.02 2.70 16 13 C -0.17 -6.07 7.68 31.12 0.24 -5.83 16 14 C 0.15 5.75 4.36 45.52 0.20 5.95 16 15 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 16 N -0.73 -36.03 5.40 -320.43 -1.73 -37.76 16 17 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -59.34 13.06 21.65 0.28 -59.05 16 21 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 C -0.14 -4.33 7.58 31.12 0.24 -4.09 16 26 C -0.10 -1.17 4.01 30.59 0.12 -1.05 16 27 C -0.06 -0.78 0.77 -52.18 -0.04 -0.82 16 28 C -0.14 -1.93 7.78 71.98 0.56 -1.37 16 29 C -0.14 -1.34 8.47 71.98 0.61 -0.73 16 30 C -0.10 -1.31 4.01 30.59 0.12 -1.19 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.36 5.95 -2.39 -0.01 1.34 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.41 7.23 8.70 -92.71 -0.81 6.42 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.37 20.02 7.93 -92.70 -0.73 19.28 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.05 0.82 4.81 -2.39 -0.01 0.81 16 50 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 52 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.81 409.19 2.66 -65.15 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.68 Total: 38.15 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 5.11 Total: -17.07 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -3.76 Total: -115.24 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.04 Total: -18.76 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -67.81 2.66 -65.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020761262.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.420 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds