Wall clock time and date at job start Tue Mar 31 2020 15:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47400 * 239.99603 * 2 1 3 5 5 C 1.53001 * 109.46900 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47256 * 299.99794 * 5 4 2 7 7 C 1.53000 * 109.46668 * 180.02562 * 5 4 2 8 8 C 1.50696 * 109.47326 * 65.00242 * 7 5 4 9 9 O 1.21276 * 120.00341 * 359.97438 * 8 7 5 10 10 N 1.34780 * 120.00150 * 180.02562 * 8 7 5 11 11 C 1.46500 * 119.99927 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.85076 * 336.18663 * 11 10 8 13 13 C 1.54051 * 113.69607 * 107.46377 * 11 10 8 14 14 C 1.53786 * 86.98423 * 139.98455 * 13 11 10 15 15 H 1.08999 * 113.61284 * 219.97824 * 14 13 11 16 16 N 1.46506 * 113.61071 * 89.16307 * 14 13 11 17 17 C 1.36931 * 119.99939 * 105.86267 * 16 14 13 18 18 H 1.08000 * 120.00644 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99715 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99673 * 179.72262 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99913 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99904 * 21 19 17 25 25 C 1.53778 * 87.17467 * 334.57247 * 14 13 11 26 26 C 1.52992 * 109.47310 * 60.00234 * 5 4 2 27 27 C 1.53000 * 109.47305 * 299.99672 * 26 5 4 28 28 C 1.53000 * 109.47394 * 300.00353 * 27 26 5 29 29 C 1.52997 * 109.47493 * 179.97438 * 27 26 5 30 30 C 1.53004 * 109.47169 * 60.00070 * 27 26 5 31 31 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47149 * 300.00097 * 1 2 3 33 33 H 1.08998 * 109.46524 * 60.00442 * 1 2 3 34 34 H 1.09001 * 109.46761 * 59.99952 * 4 2 1 35 35 H 1.09000 * 109.46997 * 300.00087 * 4 2 1 36 36 H 1.08994 * 109.47321 * 304.99493 * 7 5 4 37 37 H 1.09009 * 109.47001 * 184.99757 * 7 5 4 38 38 H 0.97005 * 119.99783 * 359.97438 * 10 8 7 39 39 H 1.09000 * 113.61438 * 25.48398 * 13 11 10 40 40 H 1.08997 * 113.69655 * 254.50163 * 13 11 10 41 41 H 0.97000 * 119.99307 * 285.86061 * 16 14 13 42 42 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 43 43 H 1.08996 * 113.61908 * 140.02474 * 25 14 13 44 44 H 1.09007 * 113.60709 * 270.84471 * 25 14 13 45 45 H 1.09000 * 109.47320 * 59.99599 * 26 5 4 46 46 H 1.08997 * 109.47368 * 180.02562 * 26 5 4 47 47 H 1.08995 * 109.47400 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.46890 * 299.99995 * 28 27 26 49 49 H 1.09006 * 109.47311 * 59.99399 * 28 27 26 50 50 H 1.08995 * 109.47282 * 300.00568 * 29 27 26 51 51 H 1.09004 * 109.46649 * 60.00670 * 29 27 26 52 52 H 1.08995 * 109.47507 * 179.97438 * 29 27 26 53 53 H 1.08998 * 109.47473 * 180.02562 * 30 27 26 54 54 H 1.09002 * 109.46897 * 59.99541 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2487 6 1 3.9338 0.3057 -1.2486 7 6 4.0801 -1.4426 -2.4983 8 6 3.6821 -0.6635 -3.7253 9 8 3.0521 0.3665 -3.6117 10 7 4.0253 -1.1120 -4.9490 11 6 3.6379 -0.3549 -6.1419 12 1 2.7688 0.2815 -5.9755 13 6 4.8133 0.3714 -6.8231 14 6 4.1855 -0.0424 -8.1646 15 1 4.9163 -0.3530 -8.9112 16 7 3.2187 0.9281 -8.6841 17 6 3.5541 1.7290 -9.7429 18 1 4.5315 1.6457 -10.1948 19 6 2.6378 2.6480 -10.2355 20 7 2.9621 3.4217 -11.2497 21 14 0.9476 2.7927 -9.4535 22 1 0.9921 3.7969 -8.3604 23 1 -0.0373 3.2210 -10.4792 24 1 0.5441 1.4754 -8.8994 25 6 3.5366 -1.2160 -7.4120 26 6 4.0796 -1.4433 0.0005 27 6 3.5695 -0.7221 1.2497 28 6 4.0799 0.7203 1.2500 29 6 4.0784 -1.4440 2.4990 30 6 2.0395 -0.7215 1.2494 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 1.6768 -0.2075 -2.1392 35 1 1.6768 -1.7490 -1.2491 36 1 3.6453 -2.4409 -2.5448 37 1 5.1665 -1.5212 -2.4544 38 1 4.5289 -1.9361 -5.0399 39 1 5.7817 -0.0914 -6.6330 40 1 4.8180 1.4487 -6.6570 41 1 2.3410 1.0031 -8.2780 42 1 2.3220 4.0642 -11.5937 43 1 2.5114 -1.4194 -7.7210 44 1 4.1561 -2.1124 -7.3839 45 1 3.7159 -2.4709 0.0003 46 1 5.1695 -1.4433 0.0010 47 1 3.7170 1.2340 2.1402 48 1 5.1700 0.7199 1.2502 49 1 3.7170 1.2344 0.3599 50 1 3.7145 -2.4713 2.4986 51 1 5.1685 -1.4446 2.4995 52 1 3.7155 -0.9299 3.3889 53 1 1.6761 -0.2073 2.1391 54 1 1.6759 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020761263.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:01 Heat of formation + Delta-G solvation = -62.814834 kcal Electronic energy + Delta-G solvation = -28143.203410 eV Core-core repulsion = 24499.344061 eV Total energy + Delta-G solvation = -3643.859349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.41896 -40.52084 -39.27924 -35.81199 -34.96643 -34.47058 -34.12277 -32.30641 -28.78413 -28.16747 -27.44326 -27.11181 -26.54206 -26.04697 -24.23448 -22.23204 -21.40713 -21.03100 -20.40676 -19.64320 -19.36187 -17.82653 -17.44904 -16.56669 -16.50129 -16.16359 -15.97891 -15.73627 -15.60698 -14.98183 -14.83202 -14.72838 -14.61948 -14.37810 -13.83764 -13.77296 -13.64362 -13.40234 -13.33388 -13.19454 -12.99952 -12.91413 -12.70818 -12.58912 -12.49747 -12.46122 -12.26934 -12.19336 -11.86258 -11.80328 -11.78524 -11.65718 -11.56298 -11.33581 -11.11277 -10.98834 -10.94795 -10.77688 -10.43235 -9.89815 -9.33541 -8.06795 -5.39830 1.32958 1.36871 1.42178 1.74839 2.33158 2.43344 3.23657 3.47045 3.67293 3.68524 3.72935 3.76416 3.83199 3.98772 4.10533 4.21099 4.24400 4.25662 4.29739 4.39584 4.46668 4.58087 4.67715 4.74826 4.76787 4.77795 4.82011 4.83202 4.85915 4.87881 4.94223 4.98308 5.01681 5.03417 5.09380 5.11520 5.14639 5.18505 5.22153 5.23927 5.28378 5.29293 5.41617 5.43448 5.55085 5.57601 5.62326 5.68978 5.73434 5.77405 6.18992 6.71216 7.03337 7.42649 7.80694 7.96822 9.14456 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002485 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.136551 B =11265.460215 C =12060.959412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.053 0.947 4 C -0.110 4.110 5 C -0.070 4.070 6 H 0.055 0.945 7 C -0.128 4.128 8 C 0.501 3.499 9 O -0.586 6.586 10 N -0.706 5.706 11 C 0.129 3.871 12 H 0.073 0.927 13 C -0.172 4.172 14 C 0.151 3.849 15 H 0.075 0.925 16 N -0.738 5.738 17 C -0.230 4.230 18 H 0.064 0.936 19 C -0.061 4.061 20 N -0.980 5.980 21 Si 0.947 3.053 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.254 1.254 25 C -0.136 4.136 26 C -0.096 4.096 27 C -0.064 4.064 28 C -0.146 4.146 29 C -0.137 4.137 30 C -0.096 4.096 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.418 0.582 39 H 0.105 0.895 40 H 0.035 0.965 41 H 0.363 0.637 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.128 0.872 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.053 0.947 53 H 0.060 0.940 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -18.463 30.262 35.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.072 0.928 4 C -0.148 4.148 5 C -0.089 4.089 6 H 0.074 0.926 7 C -0.168 4.168 8 C 0.289 3.711 9 O -0.466 6.466 10 N -0.358 5.358 11 C 0.023 3.977 12 H 0.091 0.909 13 C -0.214 4.214 14 C 0.041 3.959 15 H 0.093 0.907 16 N -0.379 5.379 17 C -0.361 4.361 18 H 0.082 0.918 19 C -0.253 4.253 20 N -0.631 5.631 21 Si 0.775 3.225 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.178 1.178 25 C -0.176 4.176 26 C -0.133 4.133 27 C -0.064 4.064 28 C -0.203 4.203 29 C -0.194 4.194 30 C -0.133 4.133 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.256 0.744 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.196 0.804 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.073 0.927 53 H 0.079 0.921 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.326 -17.662 30.157 35.026 hybrid contribution -0.963 0.890 -0.355 1.358 sum 1.362 -16.773 29.803 34.225 Atomic orbital electron populations 1.21811 0.95467 1.01902 1.01126 1.21123 0.95259 0.99247 0.95432 0.92821 1.21685 0.95377 1.00212 0.97501 1.20897 0.95356 0.99244 0.93426 0.92643 1.21806 1.04391 1.00349 0.90243 1.21549 0.78116 0.85416 0.85969 1.90687 1.41801 1.26905 1.87200 1.45939 1.57292 1.27736 1.04795 1.22231 0.97358 0.94395 0.83702 0.90869 1.24199 0.99032 0.99585 0.98550 1.21221 0.91981 0.89583 0.93128 0.90716 1.42555 1.14531 1.43581 1.37258 1.19087 0.99328 1.11706 1.05964 0.91783 1.25430 1.02138 0.98752 0.98967 1.69859 1.36882 1.27005 1.29311 0.85523 0.80785 0.78626 0.77557 1.21352 1.21705 1.17820 1.23723 1.02362 0.98220 0.93254 1.21612 1.00650 0.99133 0.91930 1.20528 0.94989 0.95270 0.95660 1.21977 1.00890 0.96210 1.01225 1.21821 1.01135 1.00242 0.96224 1.21611 0.94583 1.00553 0.96551 0.92090 0.92197 0.94311 0.93484 0.91793 0.86431 0.86465 0.74449 0.87671 0.94560 0.80383 0.93285 0.91435 0.85427 0.90564 0.90952 0.92831 0.92502 0.93595 0.92004 0.92271 0.92739 0.92086 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.09 -1.70 2.45 -10.79 -0.03 -1.72 16 3 H 0.05 1.18 6.43 -2.39 -0.02 1.16 16 4 C -0.11 -2.21 4.22 30.60 0.13 -2.08 16 5 C -0.07 -1.20 1.56 -10.80 -0.02 -1.22 16 6 H 0.06 1.26 6.24 -2.39 -0.01 1.24 16 7 C -0.13 -1.83 5.18 29.85 0.15 -1.67 16 8 C 0.50 12.10 7.55 87.66 0.66 12.76 16 9 O -0.59 -20.53 13.56 -3.02 -0.04 -20.57 16 10 N -0.71 -14.82 5.36 -439.61 -2.36 -17.17 16 11 C 0.13 3.76 4.13 45.61 0.19 3.95 16 12 H 0.07 2.72 7.46 -2.39 -0.02 2.70 16 13 C -0.17 -5.56 7.70 31.21 0.24 -5.32 16 14 C 0.15 5.46 4.55 45.52 0.21 5.66 16 15 H 0.07 2.70 8.11 -2.39 -0.02 2.68 16 16 N -0.74 -35.00 5.11 -320.44 -1.64 -36.64 16 17 C -0.23 -13.27 10.45 84.04 0.88 -12.39 16 18 H 0.06 3.99 8.06 -2.91 -0.02 3.96 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 20 N -0.98 -63.81 13.97 21.65 0.30 -63.51 16 21 Si 0.95 47.46 27.74 68.60 1.90 49.37 16 22 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 24 H -0.25 -11.56 6.52 99.48 0.65 -10.92 16 25 C -0.14 -3.57 7.57 31.12 0.24 -3.34 16 26 C -0.10 -1.12 4.01 30.59 0.12 -0.99 16 27 C -0.06 -0.80 0.77 -52.18 -0.04 -0.84 16 28 C -0.15 -2.18 7.78 71.98 0.56 -1.62 16 29 C -0.14 -1.31 8.47 71.98 0.61 -0.70 16 30 C -0.10 -1.31 4.01 30.60 0.12 -1.19 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 1.31 5.95 -2.39 -0.01 1.29 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.42 5.19 8.73 -92.70 -0.81 4.38 16 39 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.36 17.03 5.76 -92.71 -0.53 16.50 16 42 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.13 2.25 8.12 -2.38 -0.02 2.23 16 45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.05 0.87 4.81 -2.38 -0.01 0.86 16 50 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 52 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.54 406.12 2.79 -72.76 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.54 Total: 31.64 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 5.16 Total: -15.88 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.69 Total: -117.32 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.90 Total: 49.37 kcal Total: -75.54 2.79 -72.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020761263.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.941 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds