Wall clock time and date at job start Tue Mar 31 2020 15:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52831 * 1 3 3 H 1.11135 * 106.60475 * 2 1 4 4 C 1.52207 * 110.63538 * 244.02633 * 2 1 3 5 5 C 1.52763 * 110.74612 * 285.50478 * 4 2 1 6 6 H 1.08699 * 110.34205 * 60.51205 * 5 4 2 7 7 C 1.53358 * 109.10642 * 180.02562 * 5 4 2 8 8 C 1.50696 * 109.47086 * 294.54315 * 7 5 4 9 9 O 1.21286 * 120.00282 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99763 * 179.97438 * 8 7 5 11 11 C 1.46506 * 119.99952 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.84852 * 25.33640 * 11 10 8 13 13 C 1.53781 * 113.61361 * 156.53041 * 11 10 8 14 14 C 1.53782 * 87.08260 * 139.98338 * 13 11 10 15 15 H 1.08994 * 113.61387 * 220.02033 * 14 13 11 16 16 N 1.46496 * 113.61086 * 89.19689 * 14 13 11 17 17 C 1.36946 * 119.99556 * 155.00206 * 16 14 13 18 18 H 1.07994 * 119.99895 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99832 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00361 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00070 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46875 * 90.00105 * 21 19 17 23 23 H 1.48495 * 109.47265 * 210.00694 * 21 19 17 24 24 H 1.48509 * 109.46816 * 330.00628 * 21 19 17 25 25 C 1.53773 * 113.61686 * 254.13880 * 11 10 8 26 26 C 1.52694 * 108.89471 * 299.07714 * 5 4 2 27 27 C 1.52473 * 110.82764 * 61.61987 * 26 5 4 28 28 C 1.54417 * 107.72024 * 188.45853 * 27 26 5 29 29 C 1.53110 * 110.03165 * 71.66285 * 27 26 5 30 30 C 1.51530 * 111.70830 * 117.01888 * 2 1 3 31 31 H 1.08999 * 109.47161 * 175.97195 * 1 2 3 32 32 H 1.08996 * 109.47594 * 295.97362 * 1 2 3 33 33 H 1.09005 * 109.47051 * 55.97394 * 1 2 3 34 34 H 1.09330 * 109.58521 * 164.95136 * 4 2 1 35 35 H 1.09338 * 109.55070 * 45.98724 * 4 2 1 36 36 H 1.09001 * 109.47066 * 174.53887 * 7 5 4 37 37 H 1.09002 * 109.46551 * 54.54442 * 7 5 4 38 38 H 0.96997 * 120.00341 * 359.97438 * 10 8 7 39 39 H 1.09005 * 113.61233 * 254.53068 * 13 11 10 40 40 H 1.09005 * 113.61544 * 25.34734 * 13 11 10 41 41 H 0.96999 * 120.00902 * 335.00193 * 16 14 13 42 42 H 0.96998 * 120.00002 * 179.97438 * 20 19 17 43 43 H 1.09000 * 113.61464 * 334.56586 * 25 11 10 44 44 H 1.09003 * 113.61910 * 105.46867 * 25 11 10 45 45 H 1.09310 * 109.27107 * 182.26606 * 26 5 4 46 46 H 1.09303 * 109.28844 * 300.95034 * 26 5 4 47 47 H 1.09005 * 109.46801 * 181.67730 * 28 27 26 48 48 H 1.08997 * 109.47623 * 301.68434 * 28 27 26 49 49 H 1.09001 * 109.47164 * 61.68566 * 28 27 26 50 50 H 1.09001 * 109.46975 * 294.86924 * 29 27 26 51 51 H 1.09004 * 109.47332 * 54.87199 * 29 27 26 52 52 H 1.08999 * 109.47302 * 174.87251 * 29 27 26 53 53 H 1.10244 * 108.73568 * 204.60007 * 30 2 1 54 54 H 1.10203 * 108.81491 * 319.67666 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8459 1.0650 0.0000 4 6 2.0647 -0.6238 -1.2805 5 6 1.8980 -2.1421 -1.2539 6 1 0.8470 -2.4054 -1.1674 7 6 2.4498 -2.7306 -2.5581 8 6 1.6071 -2.2628 -3.7165 9 8 0.6596 -1.5313 -3.5207 10 7 1.9068 -2.6564 -4.9701 11 6 1.0871 -2.2020 -6.0962 12 1 0.5785 -1.2589 -5.8962 13 6 1.8242 -2.2303 -7.4456 14 6 0.5135 -2.7474 -8.0616 15 1 0.6602 -3.5258 -8.8103 16 7 -0.3815 -1.6810 -8.5174 17 6 -1.2959 -1.9304 -9.5059 18 1 -1.3574 -2.9133 -9.9490 19 6 -2.1443 -0.9201 -9.9374 20 7 -2.0697 0.2778 -9.3970 21 14 -3.3911 -1.2600 -11.2863 22 1 -4.6626 -1.7281 -10.6785 23 1 -3.6393 -0.0147 -12.0562 24 1 -2.8624 -2.3076 -12.1965 25 6 0.1629 -3.2917 -6.6647 26 6 2.6891 -2.7058 -0.0757 27 6 2.1604 -2.1564 1.2447 28 6 3.1341 -2.5953 2.3599 29 6 0.7948 -2.7729 1.5601 30 6 2.0888 -0.6396 1.2542 31 1 -0.3633 -1.0251 -0.0722 32 1 -0.3634 0.4500 0.9238 33 1 -0.3633 0.5751 -0.8518 34 1 3.1248 -0.3801 -1.3908 35 1 1.5237 -0.2181 -2.1397 36 1 2.4231 -3.8191 -2.5055 37 1 3.4785 -2.3989 -2.6998 38 1 2.6651 -3.2405 -5.1269 39 1 2.1157 -1.2432 -7.8046 40 1 2.6402 -2.9521 -7.4824 41 1 -0.3266 -0.7982 -8.1191 42 1 -2.6623 0.9838 -9.6988 43 1 0.5229 -4.3053 -6.4881 44 1 -0.8848 -3.1604 -6.3942 45 1 2.6070 -3.7958 -0.0746 46 1 3.7425 -2.4359 -0.1860 47 1 2.7663 -2.2419 3.3232 48 1 3.2036 -3.6830 2.3743 49 1 4.1198 -2.1708 2.1695 50 1 0.0701 -2.4527 0.8115 51 1 0.8750 -3.8599 1.5466 52 1 0.4672 -2.4449 2.5465 53 1 3.1017 -0.2423 1.4319 54 1 1.4814 -0.3219 2.1171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020761264.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:04 Heat of formation + Delta-G solvation = -64.903076 kcal Electronic energy + Delta-G solvation = -28148.959291 eV Core-core repulsion = 24505.009389 eV Total energy + Delta-G solvation = -3643.949902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.35203 -40.40215 -39.18579 -35.73221 -35.06670 -34.38770 -34.01119 -31.69092 -28.72184 -28.38466 -27.37530 -27.02823 -26.51770 -26.13490 -24.41823 -22.49057 -21.58306 -20.93670 -20.10762 -19.35952 -18.89988 -17.77232 -17.32819 -16.67951 -16.29669 -16.27211 -15.88487 -15.58672 -15.21804 -15.17133 -15.12922 -14.75690 -14.40826 -14.20767 -14.02689 -13.71914 -13.47169 -13.35033 -13.27349 -13.11088 -12.97103 -12.81048 -12.72351 -12.59364 -12.44846 -12.32919 -12.18335 -11.98067 -11.86562 -11.78118 -11.71450 -11.64023 -11.55979 -11.31865 -11.09695 -10.98763 -10.89692 -10.63875 -10.40773 -9.87012 -9.04071 -7.97089 -5.27022 1.45757 1.48386 1.56695 1.77780 2.35618 2.54150 3.34830 3.65674 3.68010 3.72167 3.76823 3.84425 3.91106 3.99447 4.15564 4.24476 4.28155 4.30610 4.31073 4.35380 4.39640 4.55720 4.68137 4.74001 4.79241 4.81079 4.82531 4.84860 4.87654 4.92597 4.95740 5.00045 5.02985 5.08211 5.10277 5.14716 5.16546 5.17614 5.25431 5.27667 5.28902 5.34649 5.39348 5.49725 5.52740 5.56498 5.60825 5.68804 5.71551 5.76916 6.25430 6.73953 7.29636 7.46020 8.06254 8.27393 9.26509 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.002264 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.164962 B =12366.583845 C =13003.506404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.053 0.947 4 C -0.111 4.111 5 C -0.065 4.065 6 H 0.055 0.945 7 C -0.129 4.129 8 C 0.499 3.501 9 O -0.585 6.585 10 N -0.706 5.706 11 C 0.133 3.867 12 H 0.064 0.936 13 C -0.138 4.138 14 C 0.150 3.850 15 H 0.077 0.923 16 N -0.724 5.724 17 C -0.243 4.243 18 H 0.082 0.918 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.977 3.023 22 H -0.290 1.290 23 H -0.296 1.296 24 H -0.264 1.264 25 C -0.171 4.171 26 C -0.095 4.095 27 C -0.058 4.058 28 C -0.141 4.141 29 C -0.146 4.146 30 C -0.093 4.093 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.417 0.583 39 H 0.058 0.942 40 H 0.126 0.874 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.105 0.895 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.045 0.955 51 H 0.058 0.942 52 H 0.054 0.946 53 H 0.063 0.937 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.995 -9.817 23.682 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.084 4.084 6 H 0.074 0.926 7 C -0.169 4.169 8 C 0.287 3.713 9 O -0.464 6.464 10 N -0.358 5.358 11 C 0.027 3.973 12 H 0.083 0.917 13 C -0.177 4.177 14 C 0.039 3.961 15 H 0.095 0.905 16 N -0.361 5.361 17 C -0.375 4.375 18 H 0.100 0.900 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.806 3.194 22 H -0.217 1.217 23 H -0.223 1.223 24 H -0.188 1.188 25 C -0.213 4.213 26 C -0.132 4.132 27 C -0.058 4.058 28 C -0.198 4.198 29 C -0.203 4.203 30 C -0.131 4.131 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.123 0.877 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.074 0.926 53 H 0.082 0.918 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.259 -9.375 23.671 30.208 hybrid contribution -1.101 0.666 -0.835 1.534 sum 15.157 -8.710 22.836 28.759 Atomic orbital electron populations 1.21872 0.96215 1.01417 1.00556 1.20729 0.95004 0.99172 0.95067 0.92848 1.21522 1.00493 0.95725 0.97132 1.20713 0.99612 0.94831 0.93198 0.92619 1.21912 1.00210 1.03671 0.91102 1.21590 0.84960 0.79513 0.85209 1.90703 1.31940 1.38437 1.85367 1.45954 1.32907 1.51353 1.05614 1.22080 0.93044 0.97104 0.85050 0.91729 1.23719 0.98048 1.02498 0.93429 1.21293 0.90281 0.91214 0.93312 0.90460 1.42405 1.40379 1.10024 1.43318 1.19723 1.10240 0.96444 1.11051 0.89964 1.25666 1.02665 0.95743 1.03176 1.69846 1.42500 1.02893 1.47074 0.85084 0.78828 0.76758 0.78754 1.21699 1.22279 1.18805 1.24191 0.98348 0.99325 0.99404 1.21503 0.99444 1.00279 0.92012 1.20352 0.95677 0.94271 0.95474 1.22236 0.98586 1.01453 0.97520 1.22049 0.96599 1.00592 1.01026 1.21228 1.01195 0.94518 0.96139 0.92906 0.92183 0.94997 0.91867 0.93555 0.86385 0.86515 0.74541 0.92292 0.85578 0.79764 0.94061 0.87692 0.95106 0.90860 0.90727 0.92780 0.92123 0.92294 0.93572 0.92255 0.92650 0.91823 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.88 71.93 0.64 -2.68 16 2 C -0.08 -1.63 2.60 -11.59 -0.03 -1.66 16 3 H 0.05 1.08 8.29 -1.23 -0.01 1.07 16 4 C -0.11 -2.45 4.36 30.25 0.13 -2.32 16 5 C -0.06 -1.21 1.65 -10.85 -0.02 -1.23 16 6 H 0.06 1.35 6.08 -2.55 -0.02 1.34 16 7 C -0.13 -2.08 5.15 29.97 0.15 -1.92 16 8 C 0.50 13.32 7.53 87.66 0.66 13.98 16 9 O -0.58 -22.22 13.59 -3.05 -0.04 -22.26 16 10 N -0.71 -16.81 5.36 -440.04 -2.36 -19.17 16 11 C 0.13 4.37 4.09 45.51 0.19 4.56 16 12 H 0.06 2.78 7.50 -2.39 -0.02 2.77 16 13 C -0.14 -4.10 7.58 31.12 0.24 -3.86 16 14 C 0.15 5.78 4.57 45.58 0.21 5.98 16 15 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 16 N -0.72 -37.51 5.31 -320.17 -1.70 -39.22 16 17 C -0.24 -13.73 9.97 84.03 0.84 -12.89 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 19 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 20 N -0.97 -61.77 13.06 21.65 0.28 -61.48 16 21 Si 0.98 47.08 29.55 68.60 2.03 49.10 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 C -0.17 -5.95 7.69 31.18 0.24 -5.71 16 26 C -0.10 -1.21 3.77 30.32 0.11 -1.10 16 27 C -0.06 -0.77 0.71 -52.21 -0.04 -0.80 16 28 C -0.14 -1.43 8.10 72.46 0.59 -0.84 16 29 C -0.15 -2.14 8.01 72.02 0.58 -1.56 16 30 C -0.09 -1.42 4.12 29.74 0.12 -1.30 16 31 H 0.05 1.28 4.87 -2.39 -0.01 1.26 16 32 H 0.06 1.18 8.05 -2.39 -0.02 1.17 16 33 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.06 1.20 8.17 -2.21 -0.02 1.19 16 35 H 0.05 1.40 5.89 -2.21 -0.01 1.39 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.42 6.18 8.71 -92.71 -0.81 5.38 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.13 2.58 8.11 -2.38 -0.02 2.56 16 41 H 0.37 21.11 7.90 -92.71 -0.73 20.38 16 42 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 0.78 8.11 -2.22 -0.02 0.76 16 46 H 0.07 0.79 8.11 -2.23 -0.02 0.77 16 47 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.54 8.05 -2.39 -0.02 0.52 16 50 H 0.05 0.84 4.71 -2.39 -0.01 0.83 16 51 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 52 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 53 H 0.06 0.86 7.92 -1.72 -0.01 0.85 16 54 H 0.06 0.87 7.92 -1.74 -0.01 0.86 16 Total: -1.00 -74.28 406.51 2.64 -71.65 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.65 Total: 39.02 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 5.08 Total: -17.64 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -3.78 Total: -119.87 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.04 Total: -22.26 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -74.28 2.64 -71.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020761264.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.742 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds