Wall clock time and date at job start Tue Mar 31 2020 15:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52834 * 1 3 3 H 1.11177 * 106.54494 * 2 1 4 4 C 1.52192 * 110.62788 * 115.87667 * 2 1 3 5 5 C 1.52775 * 110.86019 * 75.23402 * 4 2 1 6 6 H 1.08628 * 110.39211 * 299.25222 * 5 4 2 7 7 C 1.53363 * 109.11055 * 179.61710 * 5 4 2 8 8 C 1.50700 * 109.46977 * 66.33563 * 7 5 4 9 9 O 1.21281 * 120.00136 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00041 * 180.02562 * 8 7 5 11 11 C 1.46502 * 120.00294 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84719 * 336.19759 * 11 10 8 13 13 C 1.54047 * 113.61761 * 107.50363 * 11 10 8 14 14 C 1.53777 * 86.98546 * 139.98119 * 13 11 10 15 15 H 1.09003 * 113.61594 * 219.97924 * 14 13 11 16 16 N 1.46496 * 113.61823 * 89.16065 * 14 13 11 17 17 C 1.36939 * 120.00077 * 105.86272 * 16 14 13 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 14 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48498 * 109.47416 * 59.99578 * 21 19 17 23 23 H 1.48508 * 109.46609 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46903 * 299.99163 * 21 19 17 25 25 C 1.53777 * 113.61266 * 204.99710 * 11 10 8 26 26 C 1.52818 * 108.74070 * 60.72715 * 5 4 2 27 27 C 1.52591 * 110.45636 * 297.53731 * 26 5 4 28 28 C 1.54381 * 107.70766 * 172.67830 * 27 26 5 29 29 C 1.52990 * 110.18295 * 289.67611 * 27 26 5 30 30 C 1.51531 * 111.72966 * 243.07806 * 2 1 3 31 31 H 1.09005 * 109.46908 * 176.92294 * 1 2 3 32 32 H 1.08997 * 109.46957 * 296.92268 * 1 2 3 33 33 H 1.08997 * 109.47673 * 56.92636 * 1 2 3 34 34 H 1.09350 * 109.54720 * 314.70655 * 4 2 1 35 35 H 1.09335 * 109.57635 * 195.81213 * 4 2 1 36 36 H 1.08994 * 109.46954 * 306.33047 * 7 5 4 37 37 H 1.09006 * 109.46826 * 186.32949 * 7 5 4 38 38 H 0.97006 * 119.99620 * 359.97438 * 10 8 7 39 39 H 1.09000 * 113.61798 * 25.47158 * 13 11 10 40 40 H 1.09005 * 113.69844 * 254.49935 * 13 11 10 41 41 H 0.97004 * 120.00009 * 285.86890 * 16 14 13 42 42 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 43 43 H 1.09001 * 113.61040 * 105.47092 * 25 11 10 44 44 H 1.08994 * 113.69644 * 334.57886 * 25 11 10 45 45 H 1.09213 * 109.31873 * 58.03822 * 26 5 4 46 46 H 1.09224 * 109.29491 * 177.06868 * 26 5 4 47 47 H 1.08999 * 109.46988 * 59.99538 * 28 27 26 48 48 H 1.09001 * 109.46845 * 179.97438 * 28 27 26 49 49 H 1.08998 * 109.46993 * 299.99443 * 28 27 26 50 50 H 1.09003 * 109.47500 * 59.99828 * 29 27 26 51 51 H 1.09002 * 109.47405 * 180.02562 * 29 27 26 52 52 H 1.08999 * 109.47433 * 300.00014 * 29 27 26 53 53 H 1.10203 * 108.78610 * 155.29713 * 30 2 1 54 54 H 1.10181 * 108.84630 * 40.08224 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8449 1.0657 0.0000 4 6 2.0645 -0.6216 1.2815 5 6 1.9156 -2.1418 1.2525 6 1 0.8687 -2.4180 1.1644 7 6 2.4756 -2.7262 2.5552 8 6 1.6159 -2.2878 3.7127 9 8 0.6516 -1.5786 3.5175 10 7 1.9192 -2.6831 4.9650 11 6 1.0838 -2.2566 6.0904 12 1 0.5331 -1.3386 5.8846 13 6 0.2112 -3.3842 6.6735 14 6 0.5412 -2.8112 8.0618 15 1 0.7248 -3.5752 8.8173 16 7 -0.3997 -1.7820 8.5107 17 6 -1.3201 -2.0725 9.4822 18 1 -1.3551 -3.0617 9.9143 19 6 -2.2120 -1.0974 9.9072 20 7 -2.1695 0.1079 9.3803 21 14 -3.4724 -1.4960 11.2270 22 1 -2.7735 -1.9094 12.4703 23 1 -4.2993 -0.2933 11.5010 24 1 -4.3461 -2.6020 10.7591 25 6 1.8257 -2.2413 7.4372 26 6 2.7171 -2.6912 0.0730 27 6 2.1635 -2.1550 -1.2439 28 6 3.1235 -2.5943 -2.3704 29 6 0.7968 -2.7779 -1.5346 30 6 2.0893 -0.6373 -1.2551 31 1 -0.3633 -1.0262 -0.0552 32 1 -0.3633 0.4653 0.9163 33 1 -0.3634 0.5608 -0.8611 34 1 1.5150 -0.2236 2.1390 35 1 3.1212 -0.3663 1.3983 36 1 3.4949 -2.3703 2.7043 37 1 2.4759 -3.8145 2.4946 38 1 2.6906 -3.2501 5.1211 39 1 0.6170 -4.3818 6.5051 40 1 -0.8429 -3.3047 6.4075 41 1 -0.3709 -0.8947 8.1197 42 1 -2.7925 0.7894 9.6775 43 1 2.0742 -1.2394 7.7874 44 1 2.6725 -2.9262 7.4786 45 1 3.7627 -2.3930 0.1765 46 1 2.6597 -3.7819 0.0744 47 1 3.1781 -3.6826 -2.3973 48 1 2.7537 -2.2255 -3.3272 49 1 4.1160 -2.1852 -2.1820 50 1 0.1055 -2.5295 -0.7293 51 1 0.4126 -2.3876 -2.4771 52 1 0.8986 -3.8609 -1.6049 53 1 3.1012 -0.2390 -1.4336 54 1 1.4800 -0.3221 -2.1172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020761265.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:08 Heat of formation + Delta-G solvation = -64.710151 kcal Electronic energy + Delta-G solvation = -28149.116682 eV Core-core repulsion = 24505.175146 eV Total energy + Delta-G solvation = -3643.941536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.34895 -40.40479 -39.18991 -35.72647 -35.05702 -34.38667 -34.01219 -31.68677 -28.72935 -28.39831 -27.37409 -27.02782 -26.51747 -26.13024 -24.41447 -22.47743 -21.57742 -20.94066 -20.10697 -19.35367 -18.91016 -17.77427 -17.32908 -16.68028 -16.29339 -16.27683 -15.88265 -15.58794 -15.22864 -15.16567 -15.12015 -14.75993 -14.40537 -14.20947 -14.03832 -13.71625 -13.45999 -13.35314 -13.27200 -13.10203 -12.96642 -12.77010 -12.72459 -12.59852 -12.46355 -12.34156 -12.23216 -11.97499 -11.86594 -11.79089 -11.70510 -11.64651 -11.55103 -11.31608 -11.09177 -10.99398 -10.88780 -10.63278 -10.41562 -9.86912 -9.03898 -7.96806 -5.26714 1.45704 1.49666 1.55634 1.77640 2.35618 2.54393 3.34949 3.65977 3.68040 3.72434 3.76664 3.84523 3.90346 3.99400 4.15787 4.24624 4.27968 4.30520 4.31172 4.35367 4.39090 4.55040 4.68602 4.74881 4.79086 4.81084 4.82421 4.84802 4.87481 4.91687 4.95577 5.00161 5.03394 5.08348 5.10186 5.14150 5.17438 5.17509 5.25451 5.27736 5.28520 5.34984 5.39975 5.49554 5.52460 5.56126 5.60695 5.69657 5.70960 5.76657 6.25565 6.73854 7.29803 7.45867 8.06539 8.27748 9.26605 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.002268 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.803726 B =12343.704622 C =12974.444106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.053 0.947 4 C -0.110 4.110 5 C -0.065 4.065 6 H 0.056 0.944 7 C -0.130 4.130 8 C 0.499 3.501 9 O -0.585 6.585 10 N -0.706 5.706 11 C 0.133 3.867 12 H 0.065 0.935 13 C -0.170 4.170 14 C 0.149 3.851 15 H 0.076 0.924 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.082 0.918 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.978 3.022 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.279 1.279 25 C -0.137 4.137 26 C -0.095 4.095 27 C -0.058 4.058 28 C -0.141 4.141 29 C -0.145 4.145 30 C -0.093 4.093 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.417 0.583 39 H 0.105 0.895 40 H 0.030 0.970 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.058 0.942 44 H 0.126 0.874 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.045 0.955 51 H 0.054 0.946 52 H 0.059 0.941 53 H 0.064 0.936 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.367 -9.161 -23.692 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.148 4.148 5 C -0.084 4.084 6 H 0.074 0.926 7 C -0.169 4.169 8 C 0.287 3.713 9 O -0.465 6.465 10 N -0.358 5.358 11 C 0.027 3.973 12 H 0.083 0.917 13 C -0.212 4.212 14 C 0.039 3.961 15 H 0.094 0.906 16 N -0.362 5.362 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.806 3.194 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.205 1.205 25 C -0.177 4.177 26 C -0.132 4.132 27 C -0.058 4.058 28 C -0.198 4.198 29 C -0.202 4.202 30 C -0.131 4.131 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.255 0.745 39 H 0.123 0.877 40 H 0.049 0.951 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.073 0.927 52 H 0.078 0.922 53 H 0.082 0.918 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.610 -8.731 -23.690 30.222 hybrid contribution -1.125 0.608 0.849 1.535 sum 15.486 -8.123 -22.840 28.766 Atomic orbital electron populations 1.21893 0.96245 1.01687 1.00426 1.20730 0.94990 0.99192 0.95047 0.92845 1.21523 1.00528 0.95708 0.97036 1.20746 0.99591 0.94864 0.93221 0.92577 1.21919 0.99964 1.03892 0.91127 1.21599 0.85344 0.79127 0.85203 1.90704 1.31290 1.39190 1.85315 1.45952 1.31411 1.52703 1.05750 1.22132 0.92958 0.97201 0.85009 0.91660 1.24207 0.98587 0.99086 0.99366 1.21261 0.89875 0.91600 0.93399 0.90568 1.42394 1.37906 1.11049 1.44810 1.19680 1.08834 0.96850 1.12224 0.90020 1.25667 1.02487 0.95880 1.03182 1.69840 1.40982 1.03914 1.47551 0.85151 0.78690 0.76391 0.79164 1.19819 1.22403 1.20471 1.23705 0.98206 1.02278 0.93472 1.21534 0.99287 1.00415 0.92010 1.20373 0.95642 0.94297 0.95514 1.22224 0.98692 1.01432 0.97444 1.22019 0.96560 1.00608 1.01010 1.21234 1.01192 0.94516 0.96130 0.92654 0.95061 0.92287 0.93694 0.91823 0.86501 0.86380 0.74534 0.87653 0.95079 0.79765 0.94053 0.92318 0.85566 0.90653 0.90849 0.92141 0.92793 0.92247 0.93577 0.92696 0.92188 0.91761 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.92 71.93 0.64 -2.72 16 2 C -0.08 -1.62 2.59 -11.60 -0.03 -1.65 16 3 H 0.05 1.07 8.29 -1.21 -0.01 1.06 16 4 C -0.11 -2.42 4.36 30.25 0.13 -2.29 16 5 C -0.07 -1.22 1.66 -10.81 -0.02 -1.24 16 6 H 0.06 1.37 6.06 -2.58 -0.02 1.35 16 7 C -0.13 -2.08 5.14 29.97 0.15 -1.93 16 8 C 0.50 13.35 7.54 87.66 0.66 14.01 16 9 O -0.59 -22.30 13.63 -3.03 -0.04 -22.34 16 10 N -0.71 -16.85 5.36 -439.61 -2.35 -19.20 16 11 C 0.13 4.38 4.13 45.61 0.19 4.57 16 12 H 0.07 2.82 7.46 -2.39 -0.02 2.80 16 13 C -0.17 -5.95 7.70 31.21 0.24 -5.71 16 14 C 0.15 5.77 4.55 45.52 0.21 5.98 16 15 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 16 N -0.72 -37.58 5.31 -320.45 -1.70 -39.28 16 17 C -0.24 -13.82 9.97 84.03 0.84 -12.99 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 20 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 21 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 C -0.14 -4.10 7.57 31.12 0.24 -3.87 16 26 C -0.10 -1.21 3.78 30.40 0.11 -1.10 16 27 C -0.06 -0.77 0.70 -52.20 -0.04 -0.81 16 28 C -0.14 -1.42 8.11 72.45 0.59 -0.83 16 29 C -0.14 -2.14 7.99 71.98 0.57 -1.57 16 30 C -0.09 -1.41 4.12 29.77 0.12 -1.29 16 31 H 0.05 1.31 4.94 -2.38 -0.01 1.30 16 32 H 0.03 0.86 8.07 -2.39 -0.02 0.84 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.35 5.91 -2.20 -0.01 1.34 16 35 H 0.06 1.20 8.17 -2.21 -0.02 1.18 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.42 6.20 8.73 -92.70 -0.81 5.39 16 39 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.37 21.13 7.90 -92.71 -0.73 20.40 16 42 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.13 2.59 8.12 -2.39 -0.02 2.57 16 45 H 0.07 0.79 8.12 -2.27 -0.02 0.77 16 46 H 0.07 0.78 8.14 -2.27 -0.02 0.76 16 47 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 50 H 0.05 0.85 4.51 -2.39 -0.01 0.84 16 51 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 52 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.06 0.86 7.95 -1.74 -0.01 0.84 16 54 H 0.06 0.87 7.96 -1.75 -0.01 0.85 16 Total: -1.00 -74.37 406.59 2.64 -71.73 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.65 Total: 39.17 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.08 Total: -17.70 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -3.77 Total: -119.98 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.04 Total: -22.34 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -74.37 2.64 -71.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020761265.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.016 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds