Wall clock time and date at job start Tue Mar 31 2020 15:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47894 * 2 1 4 4 C 1.53011 * 109.47194 * 240.00010 * 2 1 3 5 5 C 1.52991 * 109.47194 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.47459 * 300.00082 * 5 4 2 7 7 C 1.52998 * 109.46989 * 179.97438 * 5 4 2 8 8 C 1.50709 * 109.47155 * 65.00522 * 7 5 4 9 9 O 1.21282 * 119.99288 * 359.97438 * 8 7 5 10 10 N 1.34766 * 120.00262 * 180.02562 * 8 7 5 11 11 C 1.46503 * 120.00132 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84994 * 46.26386 * 11 10 8 13 13 C 1.53780 * 113.61395 * 177.57323 * 11 10 8 14 14 C 1.53779 * 87.08088 * 89.11694 * 13 11 10 15 15 H 1.09002 * 113.61373 * 139.98161 * 14 13 11 16 16 N 1.46504 * 113.61077 * 270.88071 * 14 13 11 17 17 C 1.36935 * 120.00128 * 255.06990 * 16 14 13 18 18 H 1.08009 * 119.99857 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00354 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99543 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00121 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47097 * 120.00614 * 21 19 17 24 24 H 1.48499 * 109.46861 * 240.00296 * 21 19 17 25 25 C 1.53776 * 113.61365 * 275.07094 * 11 10 8 26 26 C 1.53009 * 109.47309 * 60.00284 * 5 4 2 27 27 C 1.52998 * 109.46784 * 299.99745 * 26 5 4 28 28 C 1.52998 * 109.47350 * 299.99834 * 27 26 5 29 29 C 1.52995 * 109.46762 * 179.97438 * 27 26 5 30 30 C 1.53001 * 109.46999 * 60.00171 * 27 26 5 31 31 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47236 * 299.99492 * 1 2 3 33 33 H 1.09005 * 109.47188 * 59.99819 * 1 2 3 34 34 H 1.09000 * 109.46473 * 60.00182 * 4 2 1 35 35 H 1.08994 * 109.46984 * 300.00373 * 4 2 1 36 36 H 1.08998 * 109.47749 * 305.00292 * 7 5 4 37 37 H 1.09006 * 109.47578 * 184.99705 * 7 5 4 38 38 H 0.97000 * 120.00293 * 359.97438 * 10 8 7 39 39 H 1.09002 * 113.61070 * 203.66227 * 13 11 10 40 40 H 1.08997 * 113.61392 * 334.56330 * 13 11 10 41 41 H 0.96994 * 119.99880 * 75.07580 * 16 14 13 42 42 H 0.97007 * 119.99686 * 179.97438 * 20 19 17 43 43 H 1.09000 * 113.61547 * 25.42643 * 25 11 10 44 44 H 1.09002 * 113.61545 * 156.33284 * 25 11 10 45 45 H 1.08999 * 109.46683 * 59.99846 * 26 5 4 46 46 H 1.08996 * 109.46904 * 179.97438 * 26 5 4 47 47 H 1.08995 * 109.47105 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.46928 * 299.99914 * 28 27 26 49 49 H 1.09005 * 109.47010 * 60.00156 * 28 27 26 50 50 H 1.09000 * 109.47733 * 300.00096 * 29 27 26 51 51 H 1.08998 * 109.47281 * 60.00230 * 29 27 26 52 52 H 1.09004 * 109.47305 * 179.97438 * 29 27 26 53 53 H 1.09005 * 109.46737 * 180.02562 * 30 27 26 54 54 H 1.08994 * 109.47546 * 59.99763 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 1 3.9329 0.3070 -1.2499 7 6 4.0798 -1.4425 -2.4986 8 6 3.6807 -0.6650 -3.7263 9 8 3.0500 0.3648 -3.6134 10 7 4.0237 -1.1145 -4.9497 11 6 3.6352 -0.3589 -6.1432 12 1 3.8326 0.7090 -6.0509 13 6 4.1520 -0.9717 -7.4555 14 6 2.8543 -1.7961 -7.4899 15 1 2.4219 -1.8884 -8.4862 16 7 2.9560 -3.0798 -6.7912 17 6 3.0570 -4.2428 -7.5070 18 1 3.0622 -4.2137 -8.5867 19 6 3.1539 -5.4591 -6.8451 20 7 3.1481 -5.4945 -5.5294 21 14 3.2925 -7.0455 -7.8216 22 1 3.2770 -6.7358 -9.2738 23 1 4.5638 -7.7304 -7.4755 24 1 2.1473 -7.9314 -7.4916 25 6 2.2171 -0.6823 -6.6424 26 6 4.0805 -1.4417 -0.0004 27 6 3.5705 -0.7204 1.2488 28 6 4.0800 0.7222 1.2486 29 6 4.0806 -1.4417 2.4980 30 6 2.0405 -0.7210 1.2492 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6766 -0.2074 -2.1392 35 1 1.6766 -1.7489 -1.2493 36 1 3.6456 -2.4412 -2.5439 37 1 5.1663 -1.5203 -2.4552 38 1 4.5277 -1.9383 -5.0400 39 1 4.2341 -0.2526 -8.2705 40 1 5.0503 -1.5764 -7.3310 41 1 2.9516 -3.1059 -5.8216 42 1 3.2154 -6.3445 -5.0668 43 1 1.5533 -1.0535 -5.8615 44 1 1.7702 0.1159 -7.2352 45 1 3.7175 -2.4695 -0.0003 46 1 5.1704 -1.4417 -0.0009 47 1 3.7171 1.2359 2.1387 48 1 5.1700 0.7225 1.2484 49 1 3.7163 1.2358 0.3586 50 1 3.7173 -2.4694 2.4980 51 1 5.1705 -1.4417 2.4980 52 1 3.7177 -0.9277 3.3880 53 1 1.6772 -0.2067 2.1390 54 1 1.6775 -1.7487 1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022859794.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:23 Heat of formation + Delta-G solvation = -59.009741 kcal Electronic energy + Delta-G solvation = -28986.447142 eV Core-core repulsion = 25342.752795 eV Total energy + Delta-G solvation = -3643.694348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.47338 -40.57215 -39.10918 -35.49246 -34.95122 -34.42487 -33.92903 -31.78683 -28.72046 -28.13061 -27.42558 -27.12022 -26.58401 -26.18737 -24.30651 -22.14712 -21.38983 -20.90341 -20.14544 -19.42733 -19.22749 -17.81381 -17.06055 -16.61649 -16.47916 -16.13428 -15.90698 -15.66078 -15.65119 -15.25378 -14.92246 -14.68016 -14.60602 -14.21685 -13.71863 -13.50962 -13.39526 -13.28503 -13.20704 -13.12588 -12.93895 -12.80408 -12.68733 -12.58427 -12.51719 -12.47145 -12.26155 -12.09587 -11.85361 -11.78901 -11.70817 -11.65379 -11.56524 -11.13813 -11.05217 -10.95317 -10.90356 -10.77376 -10.42887 -9.83483 -8.99804 -7.94181 -5.22196 1.48633 1.50072 1.58960 1.73959 2.33645 2.56876 3.38445 3.64924 3.68944 3.73088 3.75407 3.85023 3.95473 4.03260 4.10691 4.25701 4.27568 4.30501 4.39335 4.41708 4.47459 4.55788 4.67343 4.75561 4.78809 4.80718 4.83539 4.86523 4.89074 4.92581 4.96044 4.99611 5.00580 5.04355 5.08963 5.11222 5.16275 5.18857 5.24693 5.24932 5.29606 5.38943 5.42324 5.45588 5.53257 5.54128 5.57468 5.62372 5.73450 5.79938 6.29299 6.65725 7.35548 7.35720 8.10388 8.35492 9.28717 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.003247 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.488339 B = 8622.535763 C = 9606.255814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.059 4.059 6 H 0.072 0.928 7 C -0.137 4.137 8 C 0.512 3.488 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.129 3.871 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.146 3.854 15 H 0.063 0.937 16 N -0.719 5.719 17 C -0.243 4.243 18 H 0.076 0.924 19 C -0.068 4.068 20 N -0.963 5.963 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.298 1.298 25 C -0.158 4.158 26 C -0.101 4.101 27 C -0.062 4.062 28 C -0.142 4.142 29 C -0.138 4.138 30 C -0.098 4.098 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.406 0.594 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.038 0.962 44 H 0.110 0.890 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.052 0.948 51 H 0.059 0.941 52 H 0.061 0.939 53 H 0.070 0.930 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 12.166 12.722 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.078 4.078 6 H 0.090 0.910 7 C -0.177 4.177 8 C 0.301 3.699 9 O -0.452 6.452 10 N -0.357 5.357 11 C 0.024 3.976 12 H 0.106 0.894 13 C -0.198 4.198 14 C 0.036 3.964 15 H 0.081 0.919 16 N -0.358 5.358 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.799 3.201 22 H -0.193 1.193 23 H -0.220 1.220 24 H -0.226 1.226 25 C -0.198 4.198 26 C -0.139 4.139 27 C -0.062 4.062 28 C -0.199 4.199 29 C -0.195 4.195 30 C -0.136 4.136 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.242 0.758 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.211 0.789 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.129 0.871 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.080 0.920 53 H 0.089 0.911 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.230 12.751 12.634 18.088 hybrid contribution 0.044 -1.604 -0.410 1.656 sum 2.274 11.147 12.225 16.699 Atomic orbital electron populations 1.21808 0.95381 1.01524 1.01567 1.21096 0.95304 0.99521 0.94562 0.91361 1.21677 0.95330 0.99526 0.98261 1.20832 0.95350 0.99341 0.92305 0.90961 1.21806 1.03869 0.99940 0.92045 1.21093 0.78313 0.85256 0.85257 1.90595 1.41214 1.26183 1.87206 1.45966 1.56946 1.27509 1.05320 1.21730 0.95640 0.95328 0.84948 0.89439 1.23963 0.99668 0.99980 0.96196 1.21452 0.94914 0.84795 0.95230 0.91864 1.42388 1.86978 1.00838 1.05643 1.19678 1.40779 0.85635 0.91369 0.90613 1.25446 1.03633 1.00489 0.96486 1.69791 1.59083 1.25237 1.07200 0.85144 0.76521 0.80129 0.78350 1.19305 1.22000 1.22552 1.23797 0.96670 0.99631 0.99706 1.21650 1.00593 0.98751 0.92871 1.20502 0.95001 0.95842 0.94885 1.21948 1.00939 0.95332 1.01730 1.21829 1.01148 0.99986 0.96524 1.21635 0.94614 1.00237 0.97099 0.93180 0.91456 0.93795 0.92941 0.93827 0.89385 0.87258 0.75834 0.86611 0.92014 0.78908 0.94025 0.94327 0.87134 0.92331 0.91054 0.92117 0.92426 0.93022 0.92898 0.92242 0.91976 0.91123 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.09 -1.98 2.45 -10.79 -0.03 -2.01 16 3 H 0.07 1.60 6.43 -2.39 -0.02 1.58 16 4 C -0.11 -3.11 4.23 30.59 0.13 -2.98 16 5 C -0.06 -1.51 1.56 -10.79 -0.02 -1.53 16 6 H 0.07 1.94 6.24 -2.39 -0.01 1.93 16 7 C -0.14 -3.83 5.17 29.85 0.15 -3.68 16 8 C 0.51 17.32 7.55 87.66 0.66 17.99 16 9 O -0.57 -21.86 13.90 -3.04 -0.04 -21.91 16 10 N -0.71 -23.90 4.33 -440.05 -1.90 -25.80 16 11 C 0.13 4.15 4.00 45.52 0.18 4.34 16 12 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 13 C -0.16 -4.88 7.57 31.12 0.24 -4.64 16 14 C 0.15 5.57 4.55 45.52 0.21 5.78 16 15 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 16 N -0.72 -34.53 5.02 -320.44 -1.61 -36.14 16 17 C -0.24 -12.92 9.97 84.03 0.84 -12.08 16 18 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 20 N -0.96 -55.86 13.06 21.65 0.28 -55.58 16 21 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 25 C -0.16 -5.44 7.62 31.12 0.24 -5.20 16 26 C -0.10 -2.11 4.01 30.60 0.12 -1.99 16 27 C -0.06 -1.13 0.77 -52.18 -0.04 -1.17 16 28 C -0.14 -2.46 7.78 71.98 0.56 -1.90 16 29 C -0.14 -2.10 8.47 71.98 0.61 -1.49 16 30 C -0.10 -1.90 4.01 30.60 0.12 -1.77 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.05 1.80 5.95 -2.39 -0.01 1.79 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.11 2.56 8.14 -2.38 -0.02 2.55 16 38 H 0.41 14.33 7.83 -92.71 -0.73 13.60 16 39 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 41 H 0.38 19.20 6.36 -92.71 -0.59 18.61 16 42 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.05 1.03 4.81 -2.38 -0.01 1.02 16 50 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 53 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 54 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -61.96 406.20 3.41 -58.55 By element: Atomic # 1 Polarization: 52.73 SS G_CDS: -0.45 Total: 52.27 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 5.11 Total: -18.12 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -3.23 Total: -117.52 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.04 Total: -21.91 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.96 3.41 -58.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022859794.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.463 kcal (2) G-P(sol) polarization free energy of solvation -61.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds