Wall clock time and date at job start Tue Mar 31 2020 15:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 8 8 C 1.50709 * 109.46998 * 294.99525 * 7 5 4 9 9 O 1.21282 * 119.99425 * 0.02562 * 8 7 5 10 10 N 1.34771 * 120.00186 * 180.02562 * 8 7 5 11 11 C 1.46502 * 119.99986 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.85017 * 23.80734 * 11 10 8 13 13 C 1.53780 * 113.61453 * 155.00305 * 11 10 8 14 14 C 1.53772 * 87.08035 * 139.97938 * 13 11 10 15 15 H 1.09001 * 113.61771 * 89.11979 * 14 13 11 16 16 N 1.46505 * 113.61452 * 220.01535 * 14 13 11 17 17 C 1.36934 * 120.00377 * 205.00083 * 16 14 13 18 18 H 1.08007 * 119.99779 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00567 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99452 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00187 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47003 * 120.00297 * 21 19 17 24 24 H 1.48500 * 109.47427 * 239.99818 * 21 19 17 25 25 C 1.53774 * 87.08433 * 334.56617 * 14 13 11 26 26 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 5 4 28 28 C 1.52997 * 109.47457 * 60.00169 * 27 26 5 29 29 C 1.53002 * 109.47143 * 180.02562 * 27 26 5 30 30 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 31 31 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 32 32 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 33 33 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 36 36 H 1.08994 * 109.47704 * 54.99481 * 7 5 4 37 37 H 1.09003 * 109.47255 * 175.00269 * 7 5 4 38 38 H 0.97000 * 120.00126 * 0.02562 * 10 8 7 39 39 H 1.09006 * 113.61320 * 254.53222 * 13 11 10 40 40 H 1.09006 * 113.61230 * 25.34198 * 13 11 10 41 41 H 0.97001 * 120.00111 * 25.00456 * 16 14 13 42 42 H 0.96998 * 119.99672 * 179.97438 * 20 19 17 43 43 H 1.09004 * 113.61767 * 270.88512 * 25 14 13 44 44 H 1.09003 * 113.61450 * 139.97930 * 25 14 13 45 45 H 1.08993 * 109.47662 * 180.02562 * 26 5 4 46 46 H 1.09002 * 109.47075 * 300.00932 * 26 5 4 47 47 H 1.09004 * 109.46976 * 59.99715 * 28 27 26 48 48 H 1.09000 * 109.47380 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.46989 * 300.00329 * 28 27 26 50 50 H 1.09002 * 109.47067 * 59.99982 * 29 27 26 51 51 H 1.09000 * 109.47312 * 180.02562 * 29 27 26 52 52 H 1.09004 * 109.46930 * 300.00065 * 29 27 26 53 53 H 1.09000 * 109.47486 * 59.99547 * 30 2 1 54 54 H 1.09002 * 109.46716 * 299.99630 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 1 3.9329 0.3071 1.2496 7 6 4.0801 -1.4425 2.4983 8 6 3.6809 -0.6650 3.7261 9 8 3.0502 0.3647 3.6132 10 7 4.0248 -1.1140 4.9494 11 6 3.6363 -0.3585 6.1429 12 1 2.7664 0.2769 5.9771 13 6 3.5364 -1.2207 7.4123 14 6 4.1857 -0.0477 8.1653 15 1 3.4666 0.6738 8.5532 16 7 5.1702 -0.4660 9.1664 17 6 5.4484 0.3452 10.2339 18 1 4.9416 1.2933 10.3382 19 6 6.3808 -0.0513 11.1827 20 7 6.9980 -1.2068 11.0559 21 14 6.7606 1.0557 12.6386 22 1 5.9393 2.2897 12.5497 23 1 6.4433 0.3402 13.9005 24 1 8.2009 1.4171 12.6232 25 6 4.8102 0.3661 6.8224 26 6 4.0805 -1.4415 0.0001 27 6 3.5704 -0.7203 -1.2490 28 6 4.0799 0.7224 -1.2488 29 6 4.0804 -1.4415 -2.4984 30 6 2.0399 -0.7211 -1.2493 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -1.7490 1.2492 35 1 1.6767 -0.2074 2.1392 36 1 3.6458 -2.4412 2.5436 37 1 5.1664 -1.5203 2.4548 38 1 4.5296 -1.9374 5.0396 39 1 2.5113 -1.4247 7.7220 40 1 4.1554 -2.1175 7.3809 41 1 5.6252 -1.3176 9.0730 42 1 7.6499 -1.4838 11.7187 43 1 5.7786 -0.0960 6.6304 44 1 4.8136 1.4433 6.6560 45 1 5.1704 -1.4415 0.0004 46 1 3.7175 -2.4693 -0.0002 47 1 5.1699 0.7228 -1.2486 48 1 3.7168 1.2361 -2.1390 49 1 3.7163 1.2359 -0.3587 50 1 3.7171 -2.4692 -2.4984 51 1 3.7174 -0.9274 -3.3883 52 1 5.1704 -1.4414 -2.4984 53 1 1.6765 -0.2073 -2.1393 54 1 1.6765 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022859795.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:26 Heat of formation + Delta-G solvation = -66.477779 kcal Electronic energy + Delta-G solvation = -27768.867852 eV Core-core repulsion = 24124.849666 eV Total energy + Delta-G solvation = -3644.018186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.39062 -40.45235 -39.16854 -35.78043 -34.94651 -34.44612 -34.07598 -31.82279 -28.72435 -28.15135 -27.41232 -27.09539 -26.54413 -26.25074 -23.92459 -21.97627 -21.37594 -21.19694 -20.50923 -19.40611 -19.12887 -17.82315 -17.46759 -16.50273 -16.35078 -16.14382 -15.93947 -15.69629 -15.59403 -14.98537 -14.94944 -14.80040 -14.55762 -14.13763 -13.75464 -13.61858 -13.34382 -13.31261 -13.19053 -13.16837 -12.98804 -12.84560 -12.66522 -12.57426 -12.46264 -12.29046 -12.20200 -12.14296 -11.98872 -11.78049 -11.74490 -11.64243 -11.54490 -11.49692 -11.09528 -10.95466 -10.88195 -10.75954 -10.42287 -9.88851 -8.99180 -7.96420 -5.24307 1.47370 1.47626 1.57789 1.74434 2.31985 2.56755 3.35391 3.69505 3.69980 3.74582 3.76520 3.85940 3.97180 3.99283 4.11880 4.23040 4.27235 4.31337 4.31873 4.41770 4.48391 4.59450 4.69136 4.72587 4.77507 4.80400 4.83623 4.87475 4.88514 4.89837 4.90363 4.96204 5.02443 5.05422 5.10936 5.14725 5.16191 5.16717 5.20975 5.25260 5.30976 5.38558 5.44085 5.46310 5.51965 5.56018 5.59227 5.65174 5.72108 5.75992 6.26350 6.69096 7.32795 7.38286 8.08351 8.32040 9.26832 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.001969 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.765387 B =14215.156396 C =14566.278842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.069 4.069 6 H 0.058 0.942 7 C -0.133 4.133 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.710 5.710 11 C 0.137 3.863 12 H 0.102 0.898 13 C -0.139 4.139 14 C 0.149 3.851 15 H 0.076 0.924 16 N -0.723 5.723 17 C -0.244 4.244 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.294 1.294 25 C -0.170 4.170 26 C -0.098 4.098 27 C -0.064 4.064 28 C -0.145 4.145 29 C -0.138 4.138 30 C -0.096 4.096 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.412 0.588 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.059 0.941 51 H 0.055 0.945 52 H 0.056 0.944 53 H 0.062 0.938 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 -3.876 -29.246 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.088 4.088 6 H 0.077 0.923 7 C -0.172 4.172 8 C 0.295 3.705 9 O -0.459 6.459 10 N -0.361 5.361 11 C 0.031 3.969 12 H 0.120 0.880 13 C -0.179 4.179 14 C 0.039 3.961 15 H 0.094 0.906 16 N -0.361 5.361 17 C -0.376 4.376 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.212 4.212 26 C -0.135 4.135 27 C -0.064 4.064 28 C -0.202 4.202 29 C -0.195 4.195 30 C -0.133 4.133 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.249 0.751 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.075 0.925 53 H 0.080 0.920 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.775 -3.000 -29.187 30.926 hybrid contribution 0.861 0.132 1.280 1.548 sum -8.914 -2.867 -27.907 29.436 Atomic orbital electron populations 1.21801 0.95269 1.01860 1.01300 1.21122 0.95387 0.99333 0.95182 0.92459 1.21674 0.94951 1.00220 0.97755 1.20891 0.95684 0.99215 0.92979 0.92310 1.21822 1.04091 1.00521 0.90770 1.21389 0.78096 0.85406 0.85581 1.90647 1.41729 1.26438 1.87124 1.46007 1.57111 1.27800 1.05206 1.22048 0.97486 0.94291 0.83049 0.87977 1.23654 1.01799 0.98251 0.94196 1.21671 0.91200 0.96122 0.87152 0.90561 1.42501 1.46656 1.21833 1.25109 1.19731 1.17466 1.00116 1.00286 0.90695 1.25548 1.00195 0.98880 1.02188 1.69806 1.31407 1.22776 1.37846 0.85098 0.77243 0.78342 0.79238 1.19201 1.21967 1.22141 1.24147 0.98542 0.99671 0.98802 1.21623 1.00481 0.99149 0.92282 1.20533 0.95175 0.95335 0.95390 1.21970 1.00779 0.96073 1.01403 1.21830 1.01031 1.00237 0.96398 1.21618 0.94350 1.00552 0.96811 0.93881 0.92206 0.92300 0.92039 0.92919 0.86727 0.87156 0.75125 0.90165 0.89386 0.79178 0.93997 0.91092 0.93167 0.91351 0.90843 0.92744 0.92672 0.93282 0.92161 0.92578 0.92485 0.91959 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 2 C -0.09 -1.55 2.45 -10.80 -0.03 -1.57 16 3 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 4 C -0.11 -2.05 4.23 30.59 0.13 -1.92 16 5 C -0.07 -1.18 1.56 -10.79 -0.02 -1.20 16 6 H 0.06 1.29 6.24 -2.39 -0.01 1.28 16 7 C -0.13 -2.09 5.17 29.85 0.15 -1.93 16 8 C 0.51 12.31 7.55 87.66 0.66 12.97 16 9 O -0.58 -18.76 13.57 -3.04 -0.04 -18.80 16 10 N -0.71 -16.55 5.35 -440.04 -2.36 -18.91 16 11 C 0.14 3.95 4.24 45.52 0.19 4.14 16 12 H 0.10 3.14 7.46 -2.39 -0.02 3.12 16 13 C -0.14 -4.17 7.58 31.12 0.24 -3.94 16 14 C 0.15 5.76 4.48 45.51 0.20 5.97 16 15 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 16 N -0.72 -35.84 5.40 -320.46 -1.73 -37.57 16 17 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 21 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 C -0.17 -5.91 7.68 31.12 0.24 -5.67 16 26 C -0.10 -1.23 4.01 30.59 0.12 -1.11 16 27 C -0.06 -0.81 0.77 -52.16 -0.04 -0.85 16 28 C -0.15 -2.10 7.78 71.98 0.56 -1.54 16 29 C -0.14 -1.39 8.47 71.98 0.61 -0.78 16 30 C -0.10 -1.26 4.02 30.61 0.12 -1.14 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.34 5.95 -2.39 -0.01 1.32 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.41 7.46 8.73 -92.71 -0.81 6.65 16 39 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.09 2.56 8.10 -2.38 -0.02 2.54 16 41 H 0.38 19.70 7.93 -92.71 -0.73 18.97 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.05 0.87 4.81 -2.39 -0.01 0.86 16 50 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 53 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -67.01 409.33 2.62 -64.39 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.68 Total: 37.74 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 5.12 Total: -16.72 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.80 Total: -114.75 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.04 Total: -18.80 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -67.01 2.62 -64.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022859795.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.084 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds