Wall clock time and date at job start Tue Mar 31 2020 15:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 N 1.46504 * 109.47448 * 120.00355 * 2 1 3 5 5 C 1.34776 * 119.99715 * 275.00057 * 4 2 1 6 6 O 1.21281 * 120.00154 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99785 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46558 * 300.00017 * 7 5 4 9 9 C 1.52998 * 109.47112 * 59.99674 * 7 5 4 10 10 C 1.53000 * 109.47031 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47330 * 300.00284 * 10 9 7 12 12 H 1.09002 * 109.47491 * 300.00245 * 11 10 9 13 13 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 14 14 C 1.53006 * 109.47170 * 60.00116 * 11 10 9 15 15 C 1.53002 * 109.46888 * 179.97438 * 7 5 4 16 16 C 1.52997 * 109.47046 * 240.00567 * 2 1 3 17 17 H 1.09005 * 109.52286 * 299.91306 * 16 2 1 18 18 C 1.53042 * 109.50132 * 59.99674 * 16 2 1 19 19 C 1.53035 * 109.53900 * 181.31651 * 18 16 2 20 20 C 1.53197 * 109.31745 * 298.63655 * 19 18 16 21 21 N 1.46929 * 108.77090 * 54.63092 * 20 19 18 22 22 C 1.36944 * 120.62453 * 126.37389 * 21 20 19 23 23 H 1.08003 * 119.99652 * 331.96627 * 22 21 20 24 24 C 1.38808 * 119.99649 * 152.24565 * 22 21 20 25 25 N 1.31620 * 119.99964 * 159.21277 * 24 22 21 26 26 Si 1.86799 * 119.99986 * 339.20514 * 24 22 21 27 27 H 1.48503 * 109.47001 * 93.00995 * 26 24 22 28 28 H 1.48505 * 109.47208 * 213.00736 * 26 24 22 29 29 H 1.48496 * 109.47492 * 333.00383 * 26 24 22 30 30 C 1.46917 * 118.74193 * 306.64547 * 21 20 19 31 31 H 1.08999 * 109.46512 * 299.99503 * 1 2 3 32 32 H 1.08994 * 109.46941 * 59.99468 * 1 2 3 33 33 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 34 34 H 0.96990 * 119.99655 * 95.00018 * 4 2 1 35 35 H 1.08996 * 109.47222 * 300.00602 * 9 7 5 36 36 H 1.09002 * 109.46551 * 60.00308 * 9 7 5 37 37 H 1.08998 * 109.47173 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.46932 * 60.00320 * 10 9 7 39 39 H 1.08998 * 109.47274 * 300.00220 * 13 11 10 40 40 H 1.09006 * 109.46689 * 60.00161 * 13 11 10 41 41 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47125 * 180.02562 * 14 11 10 43 43 H 1.08998 * 109.47258 * 59.99862 * 14 11 10 44 44 H 1.08998 * 109.47216 * 299.99839 * 15 7 5 45 45 H 1.08999 * 109.46976 * 60.00371 * 15 7 5 46 46 H 1.09002 * 109.45762 * 61.29486 * 18 16 2 47 47 H 1.08999 * 109.44541 * 301.33340 * 18 16 2 48 48 H 1.09003 * 109.49656 * 178.68285 * 19 18 16 49 49 H 1.09005 * 109.52617 * 58.60485 * 19 18 16 50 50 H 1.09002 * 109.58078 * 294.85403 * 20 19 18 51 51 H 1.08999 * 109.70653 * 174.49195 * 20 19 18 52 52 H 0.96997 * 120.00369 * 180.02562 * 25 24 22 53 53 H 1.09005 * 109.58596 * 173.14362 * 30 21 20 54 54 H 1.08998 * 109.59192 * 293.56824 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0184 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6490 -0.7290 3.5877 8 1 1.9761 -1.5507 3.8324 9 6 4.0514 -1.2800 3.3221 10 6 4.5612 -2.0009 4.5717 11 6 4.6129 -1.0174 5.7425 12 1 5.2857 -0.1955 5.4973 13 6 5.1221 -1.7384 6.9922 14 6 3.2104 -0.4664 6.0081 15 6 2.7012 0.2543 4.7587 16 6 2.0400 -0.7211 -1.2493 17 1 1.6784 -1.7494 -1.2495 18 6 1.5301 -0.0001 -2.4993 19 6 2.0125 -0.7396 -3.7492 20 6 3.5442 -0.7367 -3.7803 21 7 4.0438 -1.2969 -2.5172 22 6 4.9321 -2.3391 -2.5193 23 1 4.9386 -3.0414 -3.3398 24 6 5.8201 -2.4962 -1.4641 25 7 6.3754 -3.6683 -1.2402 26 14 6.2272 -1.0440 -0.3619 27 1 5.3182 -1.0437 0.8124 28 1 7.6340 -1.1530 0.1011 29 1 6.0532 0.2192 -1.1230 30 6 3.5676 -0.7216 -1.2520 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6317 1.1525 35 1 4.0147 -1.9803 2.4877 36 1 4.7243 -0.4581 3.0773 37 1 5.5601 -2.3938 4.3823 38 1 3.8884 -2.8226 4.8169 39 1 4.4490 -2.5600 7.2372 40 1 6.1212 -2.1313 6.8032 41 1 5.1594 -1.0376 7.8262 42 1 3.2474 0.2346 6.8419 43 1 2.5376 -1.2881 6.2533 44 1 3.3744 1.0758 4.5137 45 1 1.7023 0.6472 4.9481 46 1 1.9124 1.0206 -2.5110 47 1 0.4404 0.0204 -2.4873 48 1 1.6296 -0.2390 -4.6386 49 1 1.6511 -1.7678 -3.7265 50 1 3.9053 0.2854 -3.8949 51 1 3.8960 -1.3443 -4.6141 52 1 6.9957 -3.7782 -0.5026 53 1 3.9329 -1.3208 -0.4178 54 1 3.9308 0.3016 -1.1561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025601509.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:42 Heat of formation + Delta-G solvation = -76.163661 kcal Electronic energy + Delta-G solvation = -29752.530674 eV Core-core repulsion = 26108.092476 eV Total energy + Delta-G solvation = -3644.438198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.47545 -39.96507 -38.87583 -36.71792 -34.87622 -33.94587 -32.92364 -32.12576 -31.65769 -30.23160 -27.85705 -27.05475 -25.01518 -24.19338 -23.65105 -23.20647 -21.71706 -21.39330 -20.83352 -20.53272 -18.81979 -18.28163 -17.29106 -17.15857 -16.54827 -16.01968 -15.57846 -15.49790 -15.30754 -15.24543 -15.17280 -14.99443 -14.68422 -14.56584 -14.21741 -14.11517 -13.85062 -13.62168 -13.52316 -13.34652 -13.16200 -13.10517 -12.78121 -12.66674 -12.51267 -12.40541 -12.13408 -12.07547 -11.95774 -11.93522 -11.70494 -11.63812 -11.55990 -11.32858 -11.29020 -11.25975 -10.98198 -10.67449 -10.60328 -10.07883 -8.92533 -8.19363 -5.49980 1.23702 1.36575 1.43455 1.59323 2.20916 2.36011 3.01261 3.30541 3.55728 3.63232 3.69031 3.77244 3.92467 3.96434 4.09863 4.11119 4.16407 4.25403 4.36062 4.38093 4.41130 4.45312 4.49482 4.50145 4.56833 4.62924 4.69757 4.79431 4.80022 4.85844 4.87081 4.95211 4.97539 4.98166 5.00783 5.07485 5.09020 5.12591 5.16590 5.20057 5.22286 5.24709 5.27730 5.37855 5.40600 5.40755 5.52904 5.56351 5.59467 5.86186 6.11440 6.50507 6.90799 7.20207 7.61123 8.03082 9.00224 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.004852 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.572326 B = 5769.324774 C = 7603.095156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.148 3.852 3 H 0.064 0.936 4 N -0.721 5.721 5 C 0.514 3.486 6 O -0.580 6.580 7 C -0.099 4.099 8 H 0.122 0.878 9 C -0.114 4.114 10 C -0.109 4.109 11 C -0.096 4.096 12 H 0.056 0.944 13 C -0.142 4.142 14 C -0.104 4.104 15 C -0.094 4.094 16 C -0.100 4.100 17 H 0.077 0.923 18 C -0.101 4.101 19 C -0.124 4.124 20 C 0.136 3.864 21 N -0.620 5.620 22 C -0.249 4.249 23 H 0.055 0.945 24 C -0.020 4.020 25 N -0.948 5.948 26 Si 0.932 3.068 27 H -0.255 1.255 28 H -0.317 1.317 29 H -0.286 1.286 30 C 0.137 3.863 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.406 0.594 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.054 0.946 52 H 0.262 0.738 53 H 0.054 0.946 54 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 5.107 11.825 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.082 0.918 4 N -0.371 5.371 5 C 0.301 3.699 6 O -0.460 6.460 7 C -0.120 4.120 8 H 0.140 0.860 9 C -0.152 4.152 10 C -0.147 4.147 11 C -0.114 4.114 12 H 0.074 0.926 13 C -0.200 4.200 14 C -0.142 4.142 15 C -0.132 4.132 16 C -0.120 4.120 17 H 0.095 0.905 18 C -0.139 4.139 19 C -0.162 4.162 20 C 0.011 3.989 21 N -0.345 5.345 22 C -0.379 4.379 23 H 0.073 0.927 24 C -0.216 4.216 25 N -0.594 5.594 26 Si 0.762 3.238 27 H -0.181 1.181 28 H -0.246 1.246 29 H -0.212 1.212 30 C 0.012 3.988 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.043 0.957 51 H 0.073 0.927 52 H 0.071 0.929 53 H 0.072 0.928 54 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -12.229 5.854 11.910 18.046 hybrid contribution 1.292 0.104 0.077 1.298 sum -10.937 5.958 11.987 17.286 Atomic orbital electron populations 1.22093 0.93051 1.02893 1.02636 1.20981 0.95419 0.96022 0.83308 0.91798 1.46231 1.66586 1.14581 1.09704 1.21171 0.76291 0.86953 0.85450 1.90630 1.52169 1.17414 1.85826 1.21389 0.98119 0.99978 0.92467 0.86040 1.21586 0.94648 0.99617 0.99321 1.21583 1.01473 0.98341 0.93272 1.21180 0.97236 0.97655 0.95368 0.92580 1.21787 1.01000 1.00612 0.96573 1.21569 0.95830 1.00354 0.96421 1.21291 1.01691 0.96695 0.93533 1.21747 0.95310 1.00335 0.94650 0.90480 1.21494 1.01410 0.98367 0.92595 1.21886 0.95215 1.00712 0.98434 1.21196 0.94212 0.96141 0.87348 1.44504 1.49915 1.38425 1.01612 1.18902 1.10356 1.01505 1.07101 0.92680 1.25710 0.97835 0.98052 0.99973 1.69938 1.34048 1.23140 1.32309 0.86175 0.75962 0.81461 0.80189 1.18110 1.24592 1.21159 1.21171 0.93995 0.95135 0.88522 0.93330 0.89599 0.91322 0.75848 0.92314 0.94052 0.92266 0.89889 0.91704 0.93002 0.91887 0.90582 0.90270 0.93511 0.91345 0.92361 0.88976 0.89286 0.92464 0.95655 0.92725 0.92911 0.92804 0.97472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.13 71.98 0.66 -2.74 16 2 C 0.15 4.29 2.16 44.99 0.10 4.39 16 3 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 4 N -0.72 -21.25 4.37 -442.53 -1.93 -23.18 16 5 C 0.51 15.84 7.12 87.66 0.62 16.47 16 6 O -0.58 -21.49 15.64 -3.03 -0.05 -21.54 16 7 C -0.10 -2.42 2.53 -11.54 -0.03 -2.45 16 8 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 9 C -0.11 -3.11 4.79 30.59 0.15 -2.96 16 10 C -0.11 -2.39 5.20 30.59 0.16 -2.24 16 11 C -0.10 -1.83 2.72 -10.79 -0.03 -1.86 16 12 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 13 C -0.14 -2.19 9.19 71.98 0.66 -1.52 16 14 C -0.10 -1.81 5.20 30.58 0.16 -1.65 16 15 C -0.09 -2.16 4.49 30.58 0.14 -2.02 16 16 C -0.10 -3.15 1.96 -10.86 -0.02 -3.18 16 17 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 18 C -0.10 -2.68 4.85 30.62 0.15 -2.53 16 19 C -0.12 -3.55 6.08 30.67 0.19 -3.36 16 20 C 0.14 5.16 6.52 86.36 0.56 5.72 16 21 N -0.62 -28.97 2.76 -699.91 -1.93 -30.90 16 22 C -0.25 -13.99 10.02 84.03 0.84 -13.15 16 23 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 24 C -0.02 -1.16 5.22 84.86 0.44 -0.72 16 25 N -0.95 -58.21 13.97 21.65 0.30 -57.91 16 26 Si 0.93 47.11 24.36 68.60 1.67 48.78 16 27 H -0.26 -11.73 6.04 99.48 0.60 -11.13 16 28 H -0.32 -16.49 7.11 99.48 0.71 -15.78 16 29 H -0.29 -14.79 6.67 99.48 0.66 -14.12 16 30 C 0.14 5.73 3.22 86.22 0.28 6.01 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.64 6.40 -2.39 -0.02 1.63 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 11.33 7.83 -92.72 -0.73 10.61 16 35 H 0.06 1.75 7.29 -2.39 -0.02 1.74 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 45 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.09 1.89 6.36 -2.39 -0.02 1.87 16 48 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 50 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 52 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 53 H 0.05 2.43 4.09 -2.38 -0.01 2.43 16 54 H 0.01 0.33 7.09 -2.39 -0.02 0.31 16 Total: -1.00 -69.47 396.91 3.05 -66.41 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.03 Total: 26.11 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 5.02 Total: -7.78 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.57 Total: -111.99 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.67 Total: 48.78 kcal Total: -69.47 3.05 -66.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601509.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.749 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds