Wall clock time and date at job start Tue Mar 31 2020 15:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47444 * 2 1 4 4 N 1.46503 * 109.47393 * 239.99892 * 2 1 3 5 5 C 1.34774 * 119.99969 * 84.99308 * 4 2 1 6 6 O 1.21282 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99862 * 180.02562 * 5 4 2 8 8 H 1.08992 * 109.47174 * 60.00425 * 7 5 4 9 9 C 1.52998 * 109.46689 * 180.02562 * 7 5 4 10 10 C 1.53001 * 109.46946 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.47045 * 300.00203 * 10 9 7 12 12 H 1.09001 * 109.46791 * 299.99542 * 11 10 9 13 13 C 1.53001 * 109.47045 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47201 * 59.99786 * 11 10 9 15 15 C 1.52995 * 109.46949 * 300.00223 * 7 5 4 16 16 C 1.53001 * 109.47118 * 119.99887 * 2 1 3 17 17 H 1.08999 * 109.49698 * 59.99805 * 16 2 1 18 18 C 1.53043 * 109.49746 * 299.93357 * 16 2 1 19 19 C 1.53045 * 109.53614 * 178.65233 * 18 16 2 20 20 C 1.53187 * 109.31163 * 61.36387 * 19 18 16 21 21 N 1.46921 * 108.77958 * 305.36417 * 20 19 18 22 22 C 1.36936 * 120.63242 * 233.58631 * 21 20 19 23 23 H 1.07998 * 119.99903 * 151.82983 * 22 21 20 24 24 C 1.38814 * 119.99881 * 331.83728 * 22 21 20 25 25 N 1.31616 * 120.00249 * 343.07051 * 24 22 21 26 26 Si 1.86802 * 119.99751 * 163.07404 * 24 22 21 27 27 H 1.48498 * 109.47290 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47185 * 120.00081 * 26 24 22 29 29 H 1.48504 * 109.47133 * 239.99694 * 26 24 22 30 30 C 1.46928 * 118.73757 * 53.61032 * 21 20 19 31 31 H 1.09006 * 109.47593 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47384 * 300.00106 * 1 2 3 33 33 H 1.09003 * 109.47275 * 60.00015 * 1 2 3 34 34 H 0.97001 * 119.99528 * 265.00680 * 4 2 1 35 35 H 1.08994 * 109.47304 * 299.99657 * 9 7 5 36 36 H 1.09004 * 109.47144 * 60.00344 * 9 7 5 37 37 H 1.09001 * 109.46952 * 59.99647 * 10 9 7 38 38 H 1.08996 * 109.47479 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.47479 * 59.99724 * 13 11 10 40 40 H 1.08998 * 109.47282 * 179.97438 * 13 11 10 41 41 H 1.09004 * 109.46951 * 299.99983 * 13 11 10 42 42 H 1.08994 * 109.46834 * 59.99933 * 14 11 10 43 43 H 1.08998 * 109.46824 * 179.97438 * 14 11 10 44 44 H 1.08994 * 109.47789 * 300.00364 * 15 7 5 45 45 H 1.09006 * 109.47369 * 60.00741 * 15 7 5 46 46 H 1.09001 * 109.45919 * 298.66938 * 18 16 2 47 47 H 1.08992 * 109.45792 * 58.64645 * 18 16 2 48 48 H 1.08996 * 109.49539 * 181.32145 * 19 18 16 49 49 H 1.09004 * 109.49589 * 301.38021 * 19 18 16 50 50 H 1.09002 * 109.58605 * 65.15445 * 20 19 18 51 51 H 1.09006 * 109.58638 * 185.57211 * 20 19 18 52 52 H 0.97000 * 120.00254 * 179.97438 * 25 24 22 53 53 H 1.09000 * 109.58457 * 186.60790 * 30 21 20 54 54 H 1.08996 * 109.58859 * 66.17960 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0183 -2.3571 6 8 1.8588 1.1585 -2.4115 7 6 2.6488 -0.7289 -3.5877 8 1 1.9760 -1.5507 -3.8325 9 6 2.7008 0.2543 -4.7588 10 6 3.2097 -0.4672 -6.0083 11 6 4.6119 -1.0191 -5.7430 12 1 5.2853 -0.1977 -5.4982 13 6 5.1205 -1.7412 -6.9923 14 6 4.5598 -2.0024 -4.5719 15 6 4.0512 -1.2798 -3.3222 16 6 2.0399 -0.7212 1.2493 17 1 1.6768 -1.7490 1.2497 18 6 1.5315 0.0007 2.4992 19 6 2.0132 -0.7393 3.7493 20 6 3.5448 -0.7385 3.7797 21 7 4.0433 -1.2996 2.5167 22 6 4.9308 -2.3424 2.5186 23 1 4.9533 -3.0339 1.6894 24 6 5.8015 -2.5107 3.5866 25 7 6.0176 -1.5173 4.4224 26 14 6.6666 -4.1472 3.8372 27 1 6.2557 -5.0932 2.7688 28 1 8.1366 -3.9439 3.7805 29 1 6.2950 -4.7058 5.1620 30 6 3.5719 -0.7202 1.2515 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2489 -1.6318 -1.1525 35 1 1.7019 0.6471 -4.9481 36 1 3.3740 1.0759 -4.5137 37 1 2.5363 -1.2886 -6.2531 38 1 3.2464 0.2331 -6.8427 39 1 5.1575 -1.0411 -7.8269 40 1 6.1196 -2.1340 -6.8035 41 1 4.4469 -2.5626 -7.2367 42 1 3.8864 -2.8236 -4.8168 43 1 5.5586 -2.3959 -4.3833 44 1 4.7241 -0.4581 -3.0773 45 1 4.0145 -1.9803 -2.4878 46 1 1.9152 1.0209 2.5107 47 1 0.4418 0.0227 2.4879 48 1 1.6313 -0.2381 4.6386 49 1 1.6498 -1.7667 3.7264 50 1 3.9074 0.2831 3.8941 51 1 3.8940 -1.3478 4.6134 52 1 6.6258 -1.6350 5.1689 53 1 3.9388 -1.3175 0.4169 54 1 3.9367 0.3028 1.1596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025601513.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:54 Heat of formation + Delta-G solvation = -79.267524 kcal Electronic energy + Delta-G solvation = -28952.485284 eV Core-core repulsion = 25307.912493 eV Total energy + Delta-G solvation = -3644.572791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.37340 -39.77048 -38.75760 -36.67447 -34.71296 -33.79610 -32.49329 -32.05618 -31.52727 -29.89239 -27.79040 -27.08413 -25.01142 -23.64024 -23.54471 -23.22718 -21.78665 -21.29528 -20.72200 -20.37254 -18.70867 -18.02505 -17.16070 -16.82422 -16.45199 -15.92185 -15.51277 -15.39870 -15.18285 -15.12742 -14.99038 -14.91999 -14.67710 -14.17121 -14.11615 -14.01408 -13.65336 -13.45826 -13.26996 -13.12376 -13.04667 -12.98224 -12.80721 -12.59724 -12.35078 -12.25107 -12.20062 -12.00201 -11.94544 -11.87960 -11.77047 -11.56604 -11.50296 -11.26339 -11.22278 -11.08405 -10.90173 -10.55542 -10.53996 -9.99982 -8.67460 -7.86458 -5.32945 1.46332 1.48216 1.58546 1.69488 2.27561 2.51099 3.28274 3.54441 3.64921 3.72910 3.78007 3.93474 4.01904 4.05631 4.16950 4.18585 4.25993 4.34914 4.45104 4.46454 4.50724 4.54581 4.59311 4.64724 4.65165 4.77964 4.85002 4.86380 4.88632 4.94545 4.95525 5.01084 5.04535 5.06963 5.11519 5.16112 5.21713 5.25289 5.26234 5.28304 5.34042 5.34977 5.43722 5.46699 5.47329 5.54942 5.61064 5.63851 5.68147 5.77856 6.39057 6.62609 7.15024 7.31820 7.86174 8.38952 9.19889 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.003599 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.929017 B = 7777.271660 C = 9857.830279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 H 0.059 0.941 4 N -0.713 5.713 5 C 0.513 3.487 6 O -0.586 6.586 7 C -0.096 4.096 8 H 0.120 0.880 9 C -0.096 4.096 10 C -0.106 4.106 11 C -0.096 4.096 12 H 0.057 0.943 13 C -0.144 4.144 14 C -0.108 4.108 15 C -0.110 4.110 16 C -0.093 4.093 17 H 0.080 0.920 18 C -0.098 4.098 19 C -0.130 4.130 20 C 0.173 3.827 21 N -0.608 5.608 22 C -0.260 4.260 23 H 0.071 0.929 24 C -0.052 4.052 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.291 1.291 30 C 0.157 3.843 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.056 0.944 50 H -0.013 1.013 51 H 0.052 0.948 52 H 0.248 0.752 53 H 0.055 0.945 54 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 -2.140 -18.798 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.077 0.923 4 N -0.364 5.364 5 C 0.301 3.699 6 O -0.467 6.467 7 C -0.117 4.117 8 H 0.138 0.862 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.115 4.115 12 H 0.075 0.925 13 C -0.201 4.201 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.113 4.113 17 H 0.098 0.902 18 C -0.136 4.136 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.390 4.390 23 H 0.089 0.911 24 C -0.247 4.247 25 N -0.584 5.584 26 Si 0.794 3.206 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.218 1.218 30 C 0.032 3.968 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.006 0.994 51 H 0.070 0.930 52 H 0.058 0.942 53 H 0.073 0.927 54 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -10.167 -1.320 -18.707 21.333 hybrid contribution 1.184 -0.575 0.851 1.567 sum -8.984 -1.895 -17.856 20.078 Atomic orbital electron populations 1.22109 0.93714 1.02862 1.02268 1.20837 0.94849 0.95939 0.83514 0.92307 1.46100 1.66530 1.14565 1.09229 1.21233 0.76295 0.86869 0.85478 1.90652 1.52266 1.17919 1.85832 1.21361 0.98884 0.99603 0.91889 0.86237 1.21294 1.01339 0.96926 0.93848 1.21576 0.96223 1.00179 0.96355 1.21180 0.96783 0.97887 0.95642 0.92475 1.21795 1.01094 1.00499 0.96722 1.21575 1.01745 0.97997 0.93178 1.21529 0.93918 0.99956 0.99413 1.21734 0.96015 0.99944 0.93648 0.90201 1.21447 1.00857 0.98042 0.93271 1.22001 0.96627 1.00218 0.98009 1.20630 0.90971 0.94617 0.89081 1.44318 1.49919 1.37911 1.00961 1.19578 1.10909 1.02559 1.05947 0.91135 1.25823 0.98439 1.00492 0.99989 1.70212 1.38862 1.31264 1.18044 0.85226 0.77442 0.80161 0.77747 1.18587 1.22246 1.21786 1.20937 0.92841 0.94609 0.88458 0.91109 0.90366 0.93417 0.75412 0.92064 0.93513 0.90508 0.91223 0.92420 0.92724 0.91878 0.90214 0.91548 0.93399 0.90932 0.93462 0.89481 0.91321 0.92485 0.99442 0.92968 0.94240 0.92675 0.99012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.13 71.98 0.66 -2.79 16 2 C 0.15 4.27 2.16 44.99 0.10 4.36 16 3 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 4 N -0.71 -17.84 4.37 -442.54 -1.93 -19.77 16 5 C 0.51 13.88 7.12 87.66 0.62 14.50 16 6 O -0.59 -20.61 15.64 -3.04 -0.05 -20.66 16 7 C -0.10 -1.90 2.53 -11.54 -0.03 -1.93 16 8 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 9 C -0.10 -1.94 4.49 30.59 0.14 -1.80 16 10 C -0.11 -1.56 5.20 30.60 0.16 -1.40 16 11 C -0.10 -1.45 2.72 -10.79 -0.03 -1.48 16 12 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 13 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 14 C -0.11 -1.66 5.21 30.61 0.16 -1.50 16 15 C -0.11 -2.15 5.10 30.61 0.16 -1.99 16 16 C -0.09 -2.90 1.97 -10.71 -0.02 -2.92 16 17 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 18 C -0.10 -3.03 4.85 30.62 0.15 -2.88 16 19 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 20 C 0.17 8.40 5.30 86.36 0.46 8.86 16 21 N -0.61 -30.29 2.99 -699.10 -2.09 -32.38 16 22 C -0.26 -14.06 9.58 84.03 0.81 -13.25 16 23 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 24 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 25 N -0.94 -55.95 11.20 21.65 0.24 -55.71 16 26 Si 0.97 44.34 29.59 68.60 2.03 46.37 16 27 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 30 C 0.16 6.44 5.56 86.36 0.48 6.92 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 1.62 6.40 -2.39 -0.02 1.61 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.41 8.68 7.84 -92.71 -0.73 7.95 16 35 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.39 7.56 -2.38 -0.02 1.37 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.09 2.12 6.36 -2.39 -0.02 2.11 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 50 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 51 H 0.05 2.87 6.06 -2.38 -0.01 2.86 16 52 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 53 H 0.05 2.16 7.44 -2.39 -0.02 2.14 16 54 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -68.16 404.43 3.38 -64.78 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.11 Total: 22.80 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.07 Total: -5.42 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.78 Total: -107.86 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.16 3.38 -64.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601513.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.491 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds