Wall clock time and date at job start Tue Mar 31 2020 15:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.43282 * 2 1 4 4 C 1.54888 * 110.48680 * 122.67972 * 2 1 3 5 5 C 1.54886 * 102.75046 * 156.62440 * 4 2 1 6 6 C 1.54268 * 104.19179 * 322.05582 * 5 4 2 7 7 C 1.53002 * 110.06822 * 142.91676 * 6 5 4 8 8 C 1.50695 * 110.03352 * 264.32201 * 6 5 4 9 9 O 1.21290 * 119.99739 * 109.72118 * 8 6 5 10 10 N 1.34770 * 120.00639 * 289.72369 * 8 6 5 11 11 C 1.46510 * 119.99790 * 5.80796 * 10 8 6 12 12 C 1.46503 * 120.00555 * 185.80744 * 10 8 6 13 13 H 1.09004 * 110.63801 * 358.31021 * 12 10 8 14 14 C 1.55151 * 110.71878 * 234.97664 * 12 10 8 15 15 C 1.55133 * 101.48298 * 205.96568 * 14 12 10 16 16 N 1.47421 * 104.72068 * 37.29910 * 15 14 12 17 17 C 1.36939 * 125.64980 * 155.81821 * 16 15 14 18 18 H 1.08001 * 120.00299 * 189.00693 * 17 16 15 19 19 C 1.38816 * 119.99820 * 9.00949 * 17 16 15 20 20 N 1.31621 * 120.00189 * 29.43789 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 209.44135 * 19 17 16 22 22 H 1.48501 * 109.47018 * 59.99951 * 21 19 17 23 23 H 1.48501 * 109.46884 * 299.99680 * 21 19 17 24 24 H 1.48501 * 109.46924 * 179.97438 * 21 19 17 25 25 C 1.47019 * 108.70532 * 335.54730 * 16 15 14 26 26 C 1.53872 * 106.59948 * 23.61479 * 6 5 4 27 27 C 1.52995 * 110.03515 * 119.28321 * 26 6 5 28 28 C 1.53001 * 110.02817 * 240.71111 * 26 6 5 29 29 H 1.09005 * 109.46811 * 182.54345 * 1 2 3 30 30 H 1.09001 * 109.47118 * 302.54256 * 1 2 3 31 31 H 1.09001 * 109.46981 * 62.54381 * 1 2 3 32 32 H 1.09008 * 110.75526 * 274.93954 * 4 2 1 33 33 H 1.09001 * 110.75839 * 38.11986 * 4 2 1 34 34 H 1.09003 * 110.48524 * 203.38423 * 5 4 2 35 35 H 1.08999 * 110.48588 * 80.73432 * 5 4 2 36 36 H 1.09009 * 109.46894 * 182.11653 * 7 6 5 37 37 H 1.09001 * 109.47521 * 302.11662 * 7 6 5 38 38 H 1.08999 * 109.47308 * 62.12043 * 7 6 5 39 39 H 1.08996 * 109.46657 * 268.98506 * 11 10 8 40 40 H 1.08996 * 109.46774 * 28.98440 * 11 10 8 41 41 H 1.08992 * 109.46923 * 148.98470 * 11 10 8 42 42 H 1.08995 * 111.00642 * 324.20641 * 14 12 10 43 43 H 1.09005 * 111.00741 * 88.02244 * 14 12 10 44 44 H 1.09001 * 110.50133 * 278.45310 * 15 14 12 45 45 H 1.09005 * 110.34029 * 156.06300 * 15 14 12 46 46 H 0.97000 * 119.99612 * 6.23013 * 20 19 17 47 47 H 1.09003 * 109.88109 * 120.70150 * 25 16 15 48 48 H 1.08996 * 109.88720 * 241.87071 * 25 16 15 49 49 H 1.09001 * 109.47314 * 59.99907 * 27 26 6 50 50 H 1.08999 * 109.46997 * 179.97438 * 27 26 6 51 51 H 1.09005 * 109.47031 * 299.99807 * 27 26 6 52 52 H 1.09006 * 109.47436 * 64.12867 * 28 26 6 53 53 H 1.08999 * 109.46921 * 184.12409 * 28 26 6 54 54 H 1.08997 * 109.47633 * 304.12774 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7834 1.2212 5 6 3.4907 -1.1988 0.7586 6 6 3.3166 -1.5396 -0.7358 7 6 4.5464 -1.0854 -1.5247 8 6 3.1130 -3.0229 -0.9067 9 8 2.0287 -3.4517 -1.2407 10 7 4.1356 -3.8731 -0.6883 11 6 5.4073 -3.3698 -0.1628 12 6 3.9758 -5.3006 -0.9763 13 1 2.9665 -5.5105 -1.3303 14 6 4.3113 -6.1540 0.2752 15 6 4.7432 -7.4958 -0.3726 16 7 5.4791 -7.1049 -1.5888 17 6 6.4250 -7.8617 -2.2272 18 1 7.0122 -7.4318 -3.0252 19 6 6.6291 -9.1816 -1.8488 20 7 5.6341 -9.8849 -1.3510 21 14 8.3159 -9.9596 -2.0459 22 1 9.3084 -9.1991 -1.2447 23 1 8.7095 -9.9319 -3.4775 24 1 8.2708 -11.3661 -1.5715 25 6 5.0245 -5.7706 -2.0064 26 6 2.0700 -0.7773 -1.2181 27 6 2.4507 0.1968 -2.3348 28 6 1.0140 -1.7641 -1.7202 29 1 -0.3633 -1.0267 0.0456 30 1 -0.3633 0.5528 0.8663 31 1 -0.3633 0.4738 -0.9119 32 1 2.1251 -0.1406 2.1000 33 1 1.4562 -1.6599 1.4223 34 1 3.8316 -2.0737 1.3122 35 1 4.1897 -0.3716 0.8824 36 1 4.3971 -1.2967 -2.5836 37 1 4.6925 -0.0143 -1.3850 38 1 5.4255 -1.6217 -1.1676 39 1 6.0638 -3.1058 -0.9918 40 1 5.2232 -2.4875 0.4501 41 1 5.8805 -4.1416 0.4440 42 1 5.1285 -5.7098 0.8435 43 1 3.4306 -6.2902 0.9029 44 1 3.8692 -8.0926 -0.6334 45 1 5.3944 -8.0505 0.3030 46 1 4.7387 -9.5124 -1.3321 47 1 5.8670 -5.0791 -2.0194 48 1 4.5725 -5.8260 -2.9967 49 1 2.8774 -0.3575 -3.1707 50 1 1.5616 0.7311 -2.6696 51 1 3.1843 0.9106 -1.9598 52 1 0.6781 -2.3891 -0.8927 53 1 0.1660 -1.2131 -2.1268 54 1 1.4455 -2.3932 -2.4987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033474081.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:15 Heat of formation + Delta-G solvation = 15.797662 kcal Electronic energy + Delta-G solvation = -30274.103774 eV Core-core repulsion = 26633.653318 eV Total energy + Delta-G solvation = -3640.450456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.58644 -40.09987 -38.57475 -36.88012 -34.74649 -33.48876 -33.03278 -31.07353 -29.54995 -28.83997 -28.30067 -27.98427 -26.38775 -24.95010 -24.62434 -22.99244 -22.18114 -21.27458 -20.29260 -19.68482 -19.13732 -17.92152 -17.11634 -16.84909 -16.32418 -16.19730 -15.76930 -15.66645 -15.37555 -15.13201 -15.01774 -14.67146 -14.59903 -14.41092 -14.21936 -14.15303 -13.80433 -13.53667 -13.38410 -13.16704 -12.76948 -12.67655 -12.63880 -12.56002 -12.48810 -12.36130 -12.11301 -11.93480 -11.90323 -11.81186 -11.71082 -11.67104 -11.62961 -11.48106 -11.29299 -11.19784 -10.96958 -10.56562 -9.63711 -9.52716 -9.11743 -8.38946 -5.33737 1.56793 1.59955 1.65108 1.84431 1.93171 2.63534 3.13491 3.32843 3.45276 3.52103 3.58785 3.68567 3.81282 3.98104 4.09668 4.16270 4.20499 4.27856 4.32101 4.36642 4.40922 4.46956 4.49598 4.53139 4.59735 4.66858 4.70772 4.76632 4.79621 4.83724 4.88384 4.89546 4.93534 4.97219 5.01268 5.02584 5.05348 5.13930 5.16670 5.18106 5.23494 5.26360 5.27695 5.36672 5.40959 5.51965 5.52828 5.59096 5.63320 5.79382 6.24954 6.46757 6.81744 7.23046 7.65762 8.21461 8.94889 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.003056 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.489703 B = 9159.923842 C = 9302.101756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.096 0.904 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.067 4.067 7 C -0.159 4.159 8 C 0.507 3.493 9 O -0.560 6.560 10 N -0.599 5.599 11 C 0.058 3.942 12 C 0.144 3.856 13 H 0.081 0.919 14 C -0.123 4.123 15 C 0.150 3.850 16 N -0.623 5.623 17 C -0.351 4.351 18 H 0.065 0.935 19 C -0.077 4.077 20 N -0.946 5.946 21 Si 1.117 2.883 22 H -0.276 1.276 23 H -0.276 1.276 24 H -0.292 1.292 25 C 0.134 3.866 26 C -0.050 4.050 27 C -0.136 4.136 28 C -0.099 4.099 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.000 1.000 45 H 0.032 0.968 46 H 0.255 0.745 47 H 0.044 0.956 48 H 0.002 0.998 49 H 0.045 0.955 50 H 0.056 0.944 51 H 0.080 0.920 52 H 0.054 0.946 53 H 0.020 0.980 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 26.580 6.358 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.114 0.886 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.070 4.070 7 C -0.216 4.216 8 C 0.299 3.701 9 O -0.440 6.440 10 N -0.331 5.331 11 C -0.083 4.083 12 C 0.039 3.961 13 H 0.099 0.901 14 C -0.162 4.162 15 C 0.024 3.976 16 N -0.350 5.350 17 C -0.479 4.479 18 H 0.083 0.917 19 C -0.273 4.273 20 N -0.589 5.589 21 Si 0.941 3.059 22 H -0.202 1.202 23 H -0.202 1.202 24 H -0.218 1.218 25 C 0.008 3.992 26 C -0.051 4.051 27 C -0.193 4.193 28 C -0.155 4.155 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.018 0.982 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.020 0.980 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.073 0.927 53 H 0.039 0.961 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.344 24.967 6.400 25.990 hybrid contribution -1.361 0.267 -0.956 1.685 sum -4.705 25.234 5.444 26.240 Atomic orbital electron populations 1.21848 0.95293 1.01233 1.01725 1.22035 0.95511 0.99296 0.92920 0.88602 1.22564 0.95374 0.99538 0.98281 1.22624 0.98719 1.02545 0.91082 1.21396 0.98229 0.88351 0.99040 1.22462 0.96011 1.03814 0.99269 1.21616 0.82733 0.90341 0.75405 1.90919 1.24731 1.80017 1.48309 1.47975 1.14798 1.06083 1.64257 1.22469 0.84666 1.01369 0.99829 1.21651 0.98482 0.80908 0.95044 0.90123 1.23065 1.01892 0.94677 0.96585 1.21461 0.93418 0.94728 0.87985 1.44807 1.46015 1.16454 1.27748 1.20050 1.12508 0.95507 1.19792 0.91739 1.27182 1.07413 0.93081 0.99580 1.70908 1.00547 1.37646 1.49793 0.82845 0.71249 0.74853 0.76958 1.20215 1.20156 1.21773 1.21570 0.95355 0.87393 0.94878 1.21179 0.92807 0.94799 0.96286 1.22010 1.01717 0.98420 0.97184 1.22183 0.96821 0.95562 1.00940 0.93963 0.91830 0.92639 0.89258 0.93672 0.91188 0.87189 0.93477 0.88531 0.89972 0.91418 0.86990 0.91237 0.89194 0.89926 0.98210 0.94923 0.93484 0.93826 0.98014 0.93619 0.92539 0.90104 0.92721 0.96146 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.04 71.98 0.58 -1.75 16 2 C -0.08 -1.20 2.91 -9.72 -0.03 -1.23 16 3 H 0.10 1.07 7.83 -2.39 -0.02 1.05 16 4 C -0.12 -1.82 6.33 31.88 0.20 -1.62 16 5 C -0.11 -1.60 4.61 31.67 0.15 -1.45 16 6 C -0.07 -1.29 0.61 -52.20 -0.03 -1.32 16 7 C -0.16 -2.45 6.82 71.98 0.49 -1.96 16 8 C 0.51 14.49 6.17 87.66 0.54 15.04 16 9 O -0.56 -20.14 9.90 -3.06 -0.03 -20.17 16 10 N -0.60 -17.18 2.87 -815.96 -2.34 -19.52 16 11 C 0.06 1.22 7.33 127.77 0.94 2.16 16 12 C 0.14 5.35 3.36 46.18 0.16 5.50 16 13 H 0.08 3.37 7.00 -2.38 -0.02 3.35 16 14 C -0.12 -4.51 6.62 32.06 0.21 -4.30 16 15 C 0.15 7.32 5.20 86.93 0.45 7.77 16 16 N -0.62 -32.86 3.35 -691.54 -2.32 -35.18 16 17 C -0.35 -20.39 10.04 84.03 0.84 -19.55 16 18 H 0.06 3.71 7.98 -2.91 -0.02 3.68 16 19 C -0.08 -4.51 5.06 84.86 0.43 -4.08 16 20 N -0.95 -59.45 12.71 21.65 0.28 -59.17 16 21 Si 1.12 51.50 30.01 68.60 2.06 53.56 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 C 0.13 5.89 6.88 86.73 0.60 6.49 16 26 C -0.05 -0.97 0.86 -51.46 -0.04 -1.01 16 27 C -0.14 -2.15 7.20 71.98 0.52 -1.63 16 28 C -0.10 -2.66 5.39 71.98 0.39 -2.27 16 29 H 0.04 0.85 6.46 -2.38 -0.02 0.84 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.87 7.73 -2.39 -0.02 0.85 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.04 0.91 8.04 -2.39 -0.02 0.89 16 34 H 0.07 1.09 6.19 -2.39 -0.01 1.07 16 35 H 0.11 0.93 7.85 -2.39 -0.02 0.91 16 36 H 0.05 0.89 6.78 -2.38 -0.02 0.87 16 37 H 0.10 0.97 6.68 -2.39 -0.02 0.95 16 38 H 0.08 1.17 3.93 -2.39 -0.01 1.16 16 39 H 0.07 1.35 6.49 -2.39 -0.02 1.34 16 40 H 0.11 1.63 3.90 -2.39 -0.01 1.62 16 41 H 0.07 1.58 6.07 -2.39 -0.01 1.57 16 42 H 0.09 2.95 6.09 -2.39 -0.01 2.94 16 43 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 44 H 0.00 0.01 6.97 -2.39 -0.02 -0.01 16 45 H 0.03 1.73 7.53 -2.38 -0.02 1.72 16 46 H 0.25 16.35 5.91 -92.71 -0.55 15.80 16 47 H 0.04 1.80 6.91 -2.39 -0.02 1.78 16 48 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.04 0.83 6.76 -2.39 -0.02 0.82 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 0.89 6.70 -2.38 -0.02 0.88 16 52 H 0.05 1.71 5.50 -11.92 -0.07 1.64 16 53 H 0.02 0.50 7.11 -2.39 -0.02 0.49 16 54 H 0.03 1.14 6.24 -15.21 -0.09 1.05 16 Total: -1.00 -73.23 372.98 5.00 -68.23 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.97 Total: 17.46 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.39 Total: -5.21 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.39 Total: -113.87 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.03 Total: -20.17 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.06 Total: 53.56 kcal Total: -73.23 5.00 -68.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033474081.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.028 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds