Wall clock time and date at job start Tue Mar 31 2020 14:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47449 * 2 1 4 4 C 1.50703 * 109.46865 * 120.00114 * 2 1 3 5 5 O 1.21281 * 120.00341 * 120.00082 * 4 2 1 6 6 N 1.34778 * 119.99700 * 299.99872 * 4 2 1 7 7 C 1.46503 * 119.99815 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.47251 * 34.99952 * 7 6 4 9 9 C 1.53002 * 109.47183 * 155.00330 * 7 6 4 10 10 C 1.52996 * 109.47001 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47186 * 299.99478 * 10 9 7 12 12 H 1.08998 * 109.47320 * 300.00214 * 11 10 9 13 13 N 1.46510 * 109.47138 * 180.02562 * 11 10 9 14 14 C 1.36933 * 119.99579 * 155.27919 * 13 11 10 15 15 H 1.07993 * 120.00585 * 359.71969 * 14 13 11 16 16 C 1.38818 * 119.99707 * 179.72749 * 14 13 11 17 17 N 1.31613 * 120.00210 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99789 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46997 * 90.00511 * 18 16 14 20 20 H 1.48498 * 109.47284 * 210.00403 * 18 16 14 21 21 H 1.48500 * 109.47270 * 330.00291 * 18 16 14 22 22 C 1.52999 * 109.47070 * 60.00466 * 11 10 9 23 23 C 1.53001 * 109.47168 * 299.99562 * 22 11 10 24 24 C 1.53004 * 109.47354 * 239.99737 * 2 1 3 25 25 C 1.54889 * 110.75724 * 169.32269 * 24 2 1 26 26 C 1.54266 * 104.19652 * 203.74542 * 25 24 2 27 27 C 1.53871 * 106.59777 * 23.60602 * 26 25 24 28 28 C 1.54264 * 106.59913 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47735 * 300.00329 * 1 2 3 30 30 H 1.09007 * 109.46496 * 60.00418 * 1 2 3 31 31 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47119 * 173.21966 * 3 2 1 33 33 H 1.08997 * 109.46640 * 293.22677 * 3 2 1 34 34 H 1.09001 * 109.46736 * 53.22357 * 3 2 1 35 35 H 0.96999 * 119.99811 * 0.02562 * 6 4 2 36 36 H 1.08998 * 109.47335 * 59.99674 * 9 7 6 37 37 H 1.09000 * 109.46725 * 299.99479 * 9 7 6 38 38 H 1.09003 * 109.47038 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47165 * 59.99786 * 10 9 7 40 40 H 0.96992 * 119.99392 * 335.00204 * 13 11 10 41 41 H 0.96996 * 120.00112 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47255 * 59.99708 * 22 11 10 43 43 H 1.09004 * 109.47491 * 179.97438 * 22 11 10 44 44 H 1.08998 * 109.47152 * 300.00209 * 23 22 11 45 45 H 1.08999 * 109.47179 * 179.97438 * 23 22 11 46 46 H 1.09001 * 110.67015 * 292.76185 * 24 2 1 47 47 H 1.09001 * 110.48879 * 322.42589 * 25 24 2 48 48 H 1.09003 * 110.48856 * 85.06021 * 25 24 2 49 49 H 1.09000 * 110.02653 * 264.32573 * 26 25 24 50 50 H 1.08999 * 110.03094 * 142.89956 * 26 25 24 51 51 H 1.08991 * 110.03295 * 240.71208 * 27 26 25 52 52 H 1.09004 * 110.06753 * 119.30754 * 27 26 25 53 53 H 1.09000 * 110.48417 * 217.70596 * 28 27 26 54 54 H 1.09008 * 110.60135 * 95.12326 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9402 3.6508 8 1 3.1946 -1.3321 3.4614 9 6 2.2465 0.0430 4.8219 10 6 2.7563 -0.6781 6.0713 11 6 1.8122 -1.8319 6.4151 12 1 0.8130 -1.4397 6.6042 13 7 2.3001 -2.5220 7.6118 14 6 1.4278 -3.2223 8.4017 15 1 0.3796 -3.2621 8.1450 16 6 1.8910 -3.8809 9.5325 17 7 1.0526 -4.5535 10.2920 18 14 3.7042 -3.8124 9.9762 19 1 3.9543 -2.6442 10.8581 20 1 4.0877 -5.0593 10.6857 21 1 4.5123 -3.6794 8.7374 22 6 1.7610 -2.8152 5.2440 23 6 1.2512 -2.0942 3.9946 24 6 2.0400 -0.7213 -1.2492 25 6 3.5649 -0.5105 -1.4207 26 6 3.8094 -0.7259 -2.9285 27 6 2.4706 -0.4493 -3.6348 28 6 1.4595 -0.0748 -2.5316 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1233 1.4448 0.1213 33 1 1.7790 1.9201 -0.9444 34 1 1.5811 1.9901 0.8232 35 1 1.1486 0.5385 2.5435 36 1 1.2472 0.4348 5.0113 37 1 2.9188 0.8652 4.5768 38 1 2.7932 0.0225 6.9055 39 1 3.7555 -1.0703 5.8821 40 1 3.2415 -2.4862 7.8423 41 1 1.3763 -5.0140 11.0819 42 1 2.7603 -3.2073 5.0549 43 1 1.0888 -3.6375 5.4891 44 1 0.2519 -1.7020 4.1837 45 1 1.2151 -2.7946 3.1602 46 1 1.7963 -1.7829 -1.2070 47 1 3.8452 0.5019 -1.1295 48 1 4.1197 -1.2440 -0.8356 49 1 4.1235 -1.7532 -3.1127 50 1 4.5706 -0.0325 -3.2861 51 1 2.1351 -1.3423 -4.1619 52 1 2.5815 0.3782 -4.3358 53 1 0.4775 -0.4907 -2.7572 54 1 1.3976 1.0077 -2.4194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034662547.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:35 Heat of formation + Delta-G solvation = -83.085937 kcal Electronic energy + Delta-G solvation = -28552.074296 eV Core-core repulsion = 24907.335926 eV Total energy + Delta-G solvation = -3644.738370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.65440 -39.92767 -38.66961 -36.43519 -35.50430 -34.41009 -32.75619 -31.71459 -29.78497 -29.38977 -28.36622 -28.05799 -25.52922 -24.43947 -23.64436 -22.45663 -21.48994 -21.20663 -20.98132 -19.77919 -19.29766 -17.88078 -17.34824 -16.88013 -16.57476 -16.20353 -16.00892 -15.91943 -15.32169 -15.06360 -14.93761 -14.73212 -14.54224 -14.37665 -14.33898 -13.80724 -13.66424 -13.35209 -13.16821 -13.12191 -12.97861 -12.90196 -12.72533 -12.43163 -12.35418 -12.29780 -12.07117 -12.00008 -11.98219 -11.84775 -11.79107 -11.76745 -11.49545 -11.37299 -11.25315 -11.20870 -11.11555 -10.90408 -10.48460 -9.96524 -9.30557 -8.02281 -5.35034 1.37044 1.40329 1.47480 1.73975 2.22367 2.48256 3.28327 3.50546 3.58392 3.67318 3.74004 3.78430 3.86243 3.97626 4.11234 4.17854 4.25428 4.31991 4.33828 4.35911 4.51726 4.57097 4.58615 4.62241 4.64356 4.72972 4.78553 4.82836 4.85338 4.85907 4.92721 4.94245 4.98033 5.04827 5.10741 5.12764 5.14558 5.17241 5.21074 5.22092 5.25217 5.30309 5.37962 5.43269 5.48205 5.54638 5.57393 5.60897 5.62863 5.78300 6.22514 6.66616 7.08554 7.37342 7.85819 8.04492 9.19395 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.002328 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.021526 B =12026.940280 C =12185.738596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.143 4.143 4 C 0.516 3.484 5 O -0.582 6.582 6 N -0.711 5.711 7 C 0.153 3.847 8 H 0.064 0.936 9 C -0.106 4.106 10 C -0.117 4.117 11 C 0.176 3.824 12 H 0.048 0.952 13 N -0.754 5.754 14 C -0.226 4.226 15 H 0.056 0.944 16 C -0.068 4.068 17 N -0.985 5.985 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.255 1.255 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.068 4.068 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.039 0.961 49 H 0.049 0.951 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.071 0.929 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 19.122 -29.297 35.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.200 4.200 4 C 0.303 3.697 5 O -0.461 6.461 6 N -0.362 5.362 7 C 0.048 3.952 8 H 0.082 0.918 9 C -0.144 4.144 10 C -0.155 4.155 11 C 0.068 3.932 12 H 0.066 0.934 13 N -0.396 5.396 14 C -0.357 4.357 15 H 0.074 0.926 16 C -0.259 4.259 17 N -0.636 5.636 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.226 1.226 21 H -0.180 1.180 22 C -0.165 4.165 23 C -0.151 4.151 24 C -0.087 4.087 25 C -0.161 4.161 26 C -0.164 4.164 27 C -0.161 4.161 28 C -0.152 4.152 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.251 0.749 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.095 0.905 53 H 0.089 0.911 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.878 18.361 -29.299 34.628 hybrid contribution 0.726 -1.014 1.026 1.615 sum 2.605 17.346 -28.273 33.273 Atomic orbital electron populations 1.21916 0.91097 1.02304 1.04445 1.20767 0.98009 0.97210 0.91107 1.22029 1.01232 0.92120 1.04604 1.21231 0.79016 0.83826 0.85597 1.90686 1.39799 1.28327 1.87336 1.45972 1.53507 1.32055 1.04673 1.20815 0.97122 0.92565 0.84738 0.91823 1.21650 1.03533 0.97308 0.91925 1.21693 0.98726 0.96887 0.98230 1.20469 0.97002 0.91194 0.84530 0.93411 1.42858 1.06819 1.61979 1.27966 1.19030 0.91344 1.22505 1.02803 0.92624 1.25517 1.02161 1.00250 0.98009 1.69883 1.35786 1.39691 1.18254 0.85398 0.80889 0.76967 0.78454 1.20050 1.22554 1.18012 1.22013 0.99964 0.98967 0.95595 1.21747 0.99737 0.97360 0.96240 1.21873 0.95246 0.98348 0.93237 1.22502 0.95883 1.01563 0.96122 1.22137 0.98311 1.01039 0.94873 1.22126 0.94432 1.01626 0.97937 1.22512 0.98412 1.01550 0.92678 0.90659 0.89146 0.93699 0.92665 0.89230 0.90321 0.74907 0.89581 0.88976 0.90553 0.92147 0.80284 0.93449 0.93642 0.94654 0.90943 0.93790 0.93030 0.90369 0.94195 0.93203 0.91124 0.92277 0.90470 0.91053 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.08 71.98 0.58 -0.93 16 2 C -0.07 -0.98 0.45 -52.93 -0.02 -1.00 16 3 C -0.14 -1.30 7.47 71.98 0.54 -0.77 16 4 C 0.52 11.45 6.27 87.66 0.55 12.00 16 5 O -0.58 -18.76 14.44 -3.03 -0.04 -18.81 16 6 N -0.71 -12.99 4.87 -442.51 -2.16 -15.15 16 7 C 0.15 3.62 2.46 44.99 0.11 3.73 16 8 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 9 C -0.11 -2.09 5.39 30.59 0.16 -1.93 16 10 C -0.12 -3.21 5.39 30.59 0.16 -3.04 16 11 C 0.18 6.52 2.77 44.99 0.12 6.65 16 12 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 13 N -0.75 -35.49 4.93 -322.94 -1.59 -37.08 16 14 C -0.23 -13.04 10.41 84.04 0.87 -12.16 16 15 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 17 N -0.99 -64.22 13.97 21.65 0.30 -63.91 16 18 Si 0.96 46.45 27.74 68.60 1.90 48.35 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 21 H -0.26 -11.35 6.52 99.48 0.65 -10.70 16 22 C -0.12 -4.54 5.50 30.59 0.17 -4.38 16 23 C -0.11 -3.22 5.49 30.60 0.17 -3.05 16 24 C -0.07 -1.15 1.84 -9.50 -0.02 -1.16 16 25 C -0.12 -2.25 5.55 31.67 0.18 -2.08 16 26 C -0.13 -1.88 6.80 31.32 0.21 -1.67 16 27 C -0.12 -1.44 6.80 31.32 0.21 -1.23 16 28 C -0.11 -1.24 4.90 31.67 0.16 -1.09 16 29 H 0.07 0.60 7.56 -2.39 -0.02 0.58 16 30 H 0.09 0.62 7.08 -2.38 -0.02 0.60 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.64 6.37 -2.39 -0.02 0.63 16 33 H 0.09 0.52 6.10 -2.39 -0.01 0.51 16 34 H 0.08 0.45 7.76 -2.39 -0.02 0.43 16 35 H 0.41 4.70 7.58 -92.71 -0.70 4.00 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.36 16.51 5.66 -92.71 -0.52 15.98 16 41 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.18 7.92 -2.39 -0.02 1.16 16 47 H 0.08 1.23 5.58 -2.39 -0.01 1.21 16 48 H 0.04 1.00 7.32 -2.39 -0.02 0.98 16 49 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 53 H 0.07 0.70 8.01 -2.39 -0.02 0.68 16 54 H 0.09 0.65 6.03 -2.38 -0.01 0.64 16 Total: -1.00 -75.52 398.59 2.63 -72.90 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.42 Total: 29.43 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.63 Total: -15.74 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.45 Total: -116.14 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.04 Total: -18.81 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -75.52 2.63 -72.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034662547.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.189 kcal (2) G-P(sol) polarization free energy of solvation -75.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds