Wall clock time and date at job start Tue Mar 31 2020 15:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47240 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00304 * 120.00020 * 6 5 4 8 8 N 1.34776 * 119.99862 * 299.99251 * 6 5 4 9 9 C 1.46505 * 120.00167 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46595 * 35.00273 * 9 8 6 11 11 C 1.53000 * 109.46924 * 155.00465 * 9 8 6 12 12 C 1.53005 * 109.46737 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47448 * 300.00310 * 12 11 9 14 14 H 1.09006 * 109.46801 * 300.00234 * 13 12 11 15 15 N 1.46492 * 109.47160 * 179.97438 * 13 12 11 16 16 C 1.36939 * 120.00175 * 154.99493 * 15 13 12 17 17 H 1.08008 * 119.99957 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00060 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46889 * 60.00778 * 20 18 16 22 22 H 1.48501 * 109.46987 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47629 * 300.00387 * 20 18 16 24 24 C 1.52999 * 109.47363 * 59.99543 * 13 12 11 25 25 C 1.52997 * 109.47392 * 300.00468 * 24 13 12 26 26 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 27 27 C 1.52997 * 109.47415 * 59.99860 * 26 5 4 28 28 H 1.09001 * 109.46922 * 180.02562 * 27 26 5 29 29 C 1.52997 * 109.47232 * 60.00127 * 27 26 5 30 30 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 31 31 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 33 33 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 34 34 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 35 35 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 36 36 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 37 37 H 0.97000 * 120.00221 * 0.02562 * 8 6 5 38 38 H 1.08998 * 109.47135 * 299.99872 * 11 9 8 39 39 H 1.08995 * 109.47152 * 60.00346 * 11 9 8 40 40 H 1.09007 * 109.46572 * 60.00160 * 12 11 9 41 41 H 1.08996 * 109.47160 * 179.97438 * 12 11 9 42 42 H 0.96999 * 120.00264 * 335.00331 * 15 13 12 43 43 H 0.96993 * 120.00077 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.47026 * 59.99924 * 24 13 12 45 45 H 1.08998 * 109.47093 * 180.02562 * 24 13 12 46 46 H 1.08997 * 109.47316 * 299.99865 * 25 24 13 47 47 H 1.08996 * 109.47159 * 179.97438 * 25 24 13 48 48 H 1.09000 * 109.46986 * 299.99742 * 26 5 4 49 49 H 1.09001 * 109.47601 * 180.02562 * 26 5 4 50 50 H 1.09001 * 109.46832 * 300.00199 * 29 27 26 51 51 H 1.09002 * 109.47153 * 60.00008 * 29 27 26 52 52 H 1.08996 * 109.46952 * 180.02562 * 29 27 26 53 53 H 1.08993 * 109.47839 * 60.00073 * 30 2 1 54 54 H 1.09000 * 109.47160 * 299.99635 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0723 -1.4316 2.4798 7 8 4.7699 -2.4173 2.3682 8 7 3.7464 -0.9718 3.7040 9 6 4.2351 -1.6625 4.9000 10 1 5.2346 -2.0539 4.7105 11 6 4.2858 -0.6798 6.0716 12 6 4.7956 -1.4014 7.3208 13 6 3.8520 -2.5558 7.6638 14 1 2.8525 -2.1641 7.8529 15 7 4.3405 -3.2470 8.8594 16 6 3.4679 -3.9435 9.6523 17 1 2.4194 -3.9836 9.3958 18 6 3.9308 -4.5989 10.7849 19 7 5.2085 -4.5505 11.0972 20 14 2.7402 -5.5485 11.8668 21 1 2.0956 -6.6225 11.0692 22 1 3.4790 -6.1520 13.0048 23 1 1.6996 -4.6254 12.3866 24 6 3.8012 -3.5385 6.4922 25 6 3.2914 -2.8170 5.2431 26 6 4.0805 -1.4415 0.0004 27 6 3.5705 -0.7204 -1.2489 28 1 3.9339 -1.2343 -2.1388 29 6 4.0800 0.7223 -1.2487 30 6 2.0400 -0.7212 -1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 1.6766 -0.2074 2.1392 36 1 3.9329 0.3071 1.2497 37 1 3.1882 -0.1835 3.7934 38 1 4.9577 0.1428 5.8270 39 1 3.2863 -0.2885 6.2610 40 1 5.7951 -1.7931 7.1315 41 1 4.8321 -0.7012 8.1553 42 1 5.2821 -3.2113 9.0897 43 1 5.5320 -5.0082 11.8889 44 1 4.8007 -3.9301 6.3029 45 1 3.1286 -4.3606 6.7364 46 1 2.2920 -2.4252 5.4322 47 1 3.2557 -3.5169 4.4083 48 1 3.7175 -2.4693 0.0002 49 1 5.1705 -1.4416 0.0007 50 1 3.7163 1.2359 -0.3587 51 1 5.1701 0.7227 -1.2484 52 1 3.7163 1.2362 -2.1384 53 1 1.6768 -0.2075 -2.1392 54 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034798234.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:49 Heat of formation + Delta-G solvation = -96.318067 kcal Electronic energy + Delta-G solvation = -28230.948462 eV Core-core repulsion = 24585.636303 eV Total energy + Delta-G solvation = -3645.312158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.53780 -39.99686 -38.88326 -36.36793 -34.70560 -33.98359 -33.08307 -32.04744 -31.69810 -28.90780 -27.61915 -27.25182 -25.74570 -24.47384 -23.61884 -22.55437 -21.94704 -21.28137 -20.67887 -19.57286 -19.11841 -18.03593 -17.30717 -16.86888 -16.41951 -16.11515 -15.75984 -15.48879 -15.41016 -15.11603 -15.04995 -14.82289 -14.56565 -14.28191 -14.20263 -13.90493 -13.47135 -13.44117 -13.15203 -13.10297 -13.07279 -12.80333 -12.64309 -12.48628 -12.44424 -12.31192 -12.18042 -12.11262 -12.04727 -11.96861 -11.74498 -11.65999 -11.46178 -11.43074 -11.20398 -11.12980 -10.85466 -10.78447 -10.53368 -9.99369 -8.99931 -7.93497 -5.21839 1.46081 1.49302 1.55215 1.68224 2.21518 2.56573 3.38956 3.57729 3.69311 3.74918 3.77194 3.84989 3.90491 4.15127 4.19884 4.24160 4.29491 4.36239 4.36900 4.39995 4.43132 4.46575 4.54453 4.59015 4.59416 4.65689 4.81792 4.83259 4.86351 4.87650 4.99752 5.01172 5.06087 5.08670 5.11597 5.14614 5.17001 5.22310 5.24515 5.27197 5.30121 5.33101 5.42092 5.48003 5.50211 5.51774 5.54462 5.57529 5.63370 5.67405 6.29120 6.63942 7.34235 7.34338 8.12125 8.34487 9.30033 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025722 B = 0.002219 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.310298 B =12614.650581 C =13004.890018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.089 0.911 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.510 3.490 7 O -0.589 6.589 8 N -0.710 5.710 9 C 0.152 3.848 10 H 0.059 0.941 11 C -0.104 4.104 12 C -0.114 4.114 13 C 0.174 3.826 14 H 0.049 0.951 15 N -0.740 5.740 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.275 1.275 24 C -0.123 4.123 25 C -0.110 4.110 26 C -0.093 4.093 27 C -0.088 4.088 28 H 0.070 0.930 29 C -0.150 4.150 30 C -0.110 4.110 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.416 0.584 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.043 0.957 48 H 0.046 0.954 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.064 0.936 53 H 0.074 0.926 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 17.015 -27.466 33.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.107 0.893 4 C -0.140 4.140 5 C -0.117 4.117 6 C 0.298 3.702 7 O -0.469 6.469 8 N -0.361 5.361 9 C 0.047 3.953 10 H 0.078 0.922 11 C -0.143 4.143 12 C -0.153 4.153 13 C 0.065 3.935 14 H 0.067 0.933 15 N -0.379 5.379 16 C -0.369 4.369 17 H 0.093 0.907 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.801 3.199 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.201 1.201 24 C -0.164 4.164 25 C -0.149 4.149 26 C -0.131 4.131 27 C -0.107 4.107 28 H 0.089 0.911 29 C -0.207 4.207 30 C -0.147 4.147 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.253 0.747 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.069 0.931 52 H 0.083 0.917 53 H 0.093 0.907 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.012 16.266 -27.462 32.908 hybrid contribution 0.047 -1.133 1.123 1.595 sum -7.964 15.133 -26.339 31.404 Atomic orbital electron populations 1.21827 0.94645 1.01658 1.02371 1.21144 0.95732 1.00152 0.93435 0.89272 1.21602 0.91355 1.01228 0.99799 1.21384 0.98036 1.01368 0.90961 1.21361 0.79036 0.83984 0.85804 1.90698 1.40164 1.28593 1.87483 1.45980 1.53385 1.32108 1.04656 1.20808 0.97128 0.92694 0.84700 0.92228 1.21643 1.03504 0.97211 0.91896 1.21644 0.98656 0.97058 0.97896 1.20477 0.96633 0.91115 0.85233 0.93334 1.42677 1.07870 1.60794 1.26552 1.19588 0.91450 1.22880 1.02974 0.90721 1.25569 0.97683 1.03201 1.00716 1.69816 1.14366 1.49597 1.28461 0.85235 0.77995 0.78615 0.78086 1.20711 1.22284 1.20102 1.22033 0.99576 0.99084 0.95701 1.21741 0.99752 0.97191 0.96254 1.21326 0.99962 0.98464 0.93326 1.21104 0.95907 0.96936 0.96712 0.91133 1.21945 1.00754 0.95268 1.02734 1.21656 0.94314 1.00466 0.98289 0.93484 0.92046 0.91900 0.93043 0.89793 0.86081 0.74681 0.89324 0.89286 0.93092 0.91369 0.79756 0.94128 0.94534 0.94222 0.90490 0.93782 0.93529 0.92903 0.91348 0.93143 0.91736 0.90744 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 71.98 0.66 -0.59 16 2 C -0.09 -0.77 2.45 -10.79 -0.03 -0.79 16 3 H 0.09 0.59 6.43 -2.39 -0.02 0.58 16 4 C -0.10 -1.21 4.38 30.59 0.13 -1.07 16 5 C -0.10 -1.45 2.25 -11.54 -0.03 -1.48 16 6 C 0.51 11.79 7.12 87.66 0.62 12.42 16 7 O -0.59 -19.93 15.64 -3.02 -0.05 -19.98 16 8 N -0.71 -13.56 4.97 -442.53 -2.20 -15.76 16 9 C 0.15 3.85 2.46 44.99 0.11 3.96 16 10 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 11 C -0.10 -2.29 5.39 30.60 0.16 -2.12 16 12 C -0.11 -3.56 5.39 30.60 0.16 -3.39 16 13 C 0.17 6.81 2.77 44.99 0.12 6.93 16 14 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 15 N -0.74 -38.03 5.12 -322.95 -1.65 -39.69 16 16 C -0.24 -13.36 9.93 84.03 0.83 -12.53 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 20 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 C -0.12 -4.66 5.50 30.59 0.17 -4.49 16 25 C -0.11 -3.25 5.49 30.59 0.17 -3.08 16 26 C -0.09 -1.63 4.02 30.59 0.12 -1.50 16 27 C -0.09 -1.05 3.20 -10.78 -0.03 -1.09 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 C -0.15 -1.37 8.50 71.98 0.61 -0.75 16 30 C -0.11 -1.13 4.74 30.61 0.14 -0.99 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.73 7.56 -2.39 -0.02 0.71 16 36 H 0.12 1.28 6.43 -2.39 -0.02 1.26 16 37 H 0.42 4.81 8.02 -92.71 -0.74 4.07 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.37 20.59 7.80 -92.71 -0.72 19.87 16 43 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 49 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 50 H 0.07 0.51 4.81 -2.39 -0.01 0.50 16 51 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -72.19 405.39 2.22 -69.97 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.61 Total: 31.68 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.42 Total: -14.77 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -3.57 Total: -115.84 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -72.19 2.22 -69.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034798234.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.350 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds