Wall clock time and date at job start Tue Mar 31 2020 15:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47054 * 2 1 4 4 C 1.52998 * 109.47303 * 240.00424 * 2 1 3 5 5 C 1.52999 * 109.47303 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.47004 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 5 10 10 H 1.08999 * 109.47228 * 325.27715 * 9 8 6 11 11 C 1.52999 * 109.47341 * 85.27876 * 9 8 6 12 12 C 1.52997 * 109.47188 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46860 * 299.99296 * 12 11 9 14 14 H 1.08999 * 109.47459 * 300.00495 * 13 12 11 15 15 N 1.46499 * 109.46968 * 180.02562 * 13 12 11 16 16 C 1.36934 * 120.00173 * 85.00277 * 15 13 12 17 17 H 1.08003 * 120.00103 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00204 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 120.00086 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46802 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46921 * 120.00070 * 20 18 16 23 23 H 1.48498 * 109.47274 * 240.00466 * 20 18 16 24 24 C 1.53003 * 109.46811 * 60.01012 * 13 12 11 25 25 C 1.53001 * 109.47193 * 205.27836 * 9 8 6 26 26 C 1.53001 * 109.46768 * 59.99665 * 5 4 2 27 27 C 1.52998 * 109.47157 * 300.00029 * 26 5 4 28 28 H 1.09009 * 109.46771 * 180.02562 * 27 26 5 29 29 C 1.53001 * 109.47365 * 299.99937 * 27 26 5 30 30 C 1.52993 * 109.46873 * 119.99891 * 2 1 3 31 31 H 1.09007 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47611 * 299.99832 * 1 2 3 33 33 H 1.09009 * 109.47378 * 59.99812 * 1 2 3 34 34 H 1.09000 * 109.47250 * 59.99315 * 4 2 1 35 35 H 1.09007 * 109.46897 * 300.00194 * 4 2 1 36 36 H 1.08993 * 109.46773 * 300.00165 * 5 4 2 37 37 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.46823 * 300.00095 * 11 9 8 39 39 H 1.08999 * 109.47091 * 59.99755 * 11 9 8 40 40 H 1.09002 * 109.46693 * 180.02562 * 12 11 9 41 41 H 1.08993 * 109.47585 * 60.00233 * 12 11 9 42 42 H 0.97007 * 120.00332 * 265.00292 * 15 13 12 43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47291 * 180.02562 * 24 13 12 45 45 H 1.08999 * 109.47531 * 59.99527 * 24 13 12 46 46 H 1.08999 * 109.46935 * 300.00059 * 25 9 8 47 47 H 1.09004 * 109.47138 * 59.99988 * 25 9 8 48 48 H 1.09001 * 109.47406 * 60.00127 * 26 5 4 49 49 H 1.09001 * 109.47038 * 180.02562 * 26 5 4 50 50 H 1.08990 * 109.47234 * 180.02562 * 29 27 26 51 51 H 1.09002 * 109.47245 * 300.01080 * 29 27 26 52 52 H 1.09009 * 109.46675 * 59.99979 * 29 27 26 53 53 H 1.08995 * 109.47584 * 299.99847 * 30 2 1 54 54 H 1.09001 * 109.47191 * 60.00193 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0723 -1.4314 -2.4798 7 8 3.2842 -1.8927 -3.2780 8 7 5.3974 -1.5537 -2.6935 9 6 5.8858 -2.2500 -3.8863 10 1 5.2115 -3.0713 -4.1292 11 6 5.9414 -1.2715 -5.0612 12 6 6.4508 -1.9988 -6.3071 13 6 7.8516 -2.5521 -6.0375 14 1 8.5261 -1.7310 -5.7949 15 7 8.3396 -3.2480 -7.2307 16 6 8.9534 -2.5432 -8.2314 17 1 9.0782 -1.4742 -8.1409 18 6 9.4163 -3.2027 -9.3618 19 7 9.2648 -4.5055 -9.4720 20 14 10.2544 -2.2412 -10.7267 21 1 10.3005 -0.8024 -10.3622 22 1 11.6374 -2.7488 -10.9125 23 1 9.4919 -2.4080 -11.9899 24 6 7.7960 -3.5308 -4.8628 25 6 7.2866 -2.8030 -3.6164 26 6 4.0805 -1.4415 -0.0003 27 6 3.5704 -0.7203 1.2489 28 1 3.9345 -1.2337 2.1389 29 6 4.0799 0.7224 1.2487 30 6 2.0399 -0.7212 1.2492 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6766 -0.2073 -2.1392 35 1 1.6766 -1.7489 -1.2493 36 1 3.9329 0.3072 -1.2497 37 1 6.0278 -1.1845 -2.0553 38 1 4.9434 -0.8775 -5.2534 39 1 6.6156 -0.4502 -4.8183 40 1 6.4908 -1.3015 -7.1439 41 1 5.7762 -2.8198 -6.5498 42 1 8.2279 -4.2082 -7.3119 43 1 9.5886 -4.9663 -10.2617 44 1 8.7939 -3.9246 -4.6704 45 1 7.1214 -4.3519 -5.1055 46 1 7.9608 -1.9816 -3.3736 47 1 7.2470 -3.5002 -2.7795 48 1 3.7175 -2.4693 -0.0001 49 1 5.1705 -1.4407 -0.0003 50 1 3.7170 1.2360 2.1388 51 1 5.1699 0.7228 1.2483 52 1 3.7162 1.2360 0.3586 53 1 1.6766 -0.2074 2.1392 54 1 1.6766 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034798235.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:53 Heat of formation + Delta-G solvation = -96.543835 kcal Electronic energy + Delta-G solvation = -28157.380743 eV Core-core repulsion = 24512.058795 eV Total energy + Delta-G solvation = -3645.321948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.53214 -39.99298 -38.87850 -36.36844 -34.74923 -33.98402 -32.98045 -32.08331 -31.69268 -28.92955 -27.61574 -27.27434 -25.75713 -24.46943 -23.59308 -22.29533 -22.20214 -21.29277 -20.69182 -19.57563 -19.11698 -17.99286 -17.32417 -16.87000 -16.35838 -16.14950 -15.78516 -15.44292 -15.35907 -15.17431 -14.99817 -14.78316 -14.56618 -14.47181 -14.12296 -13.96913 -13.49892 -13.39915 -13.17144 -13.09347 -13.02020 -12.86093 -12.66790 -12.47601 -12.42594 -12.31451 -12.11592 -12.07650 -12.03951 -11.93546 -11.78325 -11.65573 -11.46936 -11.40469 -11.20612 -11.12107 -10.87143 -10.79177 -10.54454 -9.98725 -9.00061 -7.94049 -5.22225 1.46106 1.47121 1.56909 1.68804 2.21147 2.56113 3.38819 3.59864 3.70862 3.73634 3.77193 3.85119 3.90481 4.13574 4.19531 4.23808 4.29612 4.36547 4.37580 4.39984 4.44835 4.48490 4.54233 4.59076 4.61050 4.66587 4.79873 4.83707 4.85835 4.88524 4.98946 5.00104 5.05487 5.08110 5.11607 5.14441 5.19387 5.24055 5.24627 5.27430 5.28000 5.33346 5.44030 5.47965 5.49315 5.53201 5.54423 5.57526 5.63482 5.68038 6.28894 6.64106 7.34066 7.34422 8.11764 8.34052 9.29891 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.002127 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.863120 B =13162.890948 C =13432.705986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.082 0.918 4 C -0.091 4.091 5 C -0.098 4.098 6 C 0.510 3.490 7 O -0.589 6.589 8 N -0.710 5.710 9 C 0.152 3.848 10 H 0.059 0.941 11 C -0.111 4.111 12 C -0.123 4.123 13 C 0.173 3.827 14 H 0.049 0.951 15 N -0.740 5.740 16 C -0.234 4.234 17 H 0.076 0.924 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.297 1.297 24 C -0.114 4.114 25 C -0.104 4.104 26 C -0.102 4.102 27 C -0.086 4.086 28 H 0.082 0.918 29 C -0.153 4.153 30 C -0.110 4.110 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.118 0.882 37 H 0.416 0.584 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.055 0.945 49 H 0.085 0.915 50 H 0.059 0.941 51 H 0.062 0.938 52 H 0.058 0.942 53 H 0.073 0.927 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 11.551 29.155 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.298 3.702 7 O -0.469 6.469 8 N -0.361 5.361 9 C 0.047 3.953 10 H 0.077 0.923 11 C -0.150 4.150 12 C -0.164 4.164 13 C 0.065 3.935 14 H 0.067 0.933 15 N -0.379 5.379 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.220 1.220 23 H -0.224 1.224 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.104 4.104 28 H 0.101 0.899 29 C -0.210 4.210 30 C -0.147 4.147 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.253 0.747 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.074 0.926 49 H 0.103 0.897 50 H 0.078 0.922 51 H 0.081 0.919 52 H 0.077 0.923 53 H 0.092 0.908 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.713 11.385 28.515 33.231 hybrid contribution 0.411 -0.263 -1.507 1.584 sum -12.302 11.122 27.008 31.694 Atomic orbital electron populations 1.21828 0.95123 1.01641 1.01963 1.21161 0.95580 0.99999 0.93903 0.89956 1.21355 0.92972 1.00607 0.98030 1.21395 0.97353 1.01323 0.91798 1.21360 0.82211 0.78927 0.87685 1.90700 1.56606 1.50442 1.49185 1.45976 1.07019 1.58062 1.25053 1.20804 0.95862 0.93998 0.84664 0.92270 1.21748 1.00295 0.98541 0.94425 1.22029 0.98500 0.98945 0.96907 1.20490 0.92459 0.94264 0.86315 0.93303 1.42695 1.69535 1.07086 1.18579 1.19662 1.27926 0.92225 0.96778 0.90651 1.25570 1.03783 0.96682 1.01246 1.69829 1.54069 1.08429 1.29951 0.85097 0.77460 0.78332 0.79062 1.18946 1.21957 1.22397 1.21652 1.01235 0.97988 0.94366 1.21653 0.94084 1.01059 0.97450 1.21576 1.01433 0.98633 0.92316 1.21086 0.95142 0.96966 0.97231 0.89943 1.21966 1.01442 0.95368 1.02205 1.21656 0.95266 1.00373 0.97423 0.93310 0.91467 0.93160 0.93223 0.93292 0.86443 0.74687 0.93687 0.90464 0.94156 0.94528 0.79762 0.94150 0.91380 0.93102 0.89276 0.89365 0.92609 0.89669 0.92173 0.91868 0.92288 0.90797 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.19 71.98 0.66 -1.13 16 2 C -0.09 -1.06 2.44 -10.80 -0.03 -1.08 16 3 H 0.08 0.86 6.43 -2.39 -0.02 0.84 16 4 C -0.09 -1.61 3.77 30.59 0.12 -1.49 16 5 C -0.10 -1.47 2.25 -11.54 -0.03 -1.50 16 6 C 0.51 11.79 7.12 87.66 0.62 12.41 16 7 O -0.59 -19.91 15.64 -3.04 -0.05 -19.96 16 8 N -0.71 -13.54 4.97 -442.54 -2.20 -15.74 16 9 C 0.15 3.84 2.45 44.99 0.11 3.95 16 10 H 0.06 1.87 7.57 -2.39 -0.02 1.85 16 11 C -0.11 -3.26 5.50 30.59 0.17 -3.09 16 12 C -0.12 -4.63 5.50 30.59 0.17 -4.46 16 13 C 0.17 6.77 2.77 44.99 0.12 6.89 16 14 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 15 N -0.74 -37.96 5.12 -322.93 -1.65 -39.62 16 16 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 17 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 19 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 20 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 24 C -0.11 -3.55 5.39 30.61 0.17 -3.38 16 25 C -0.10 -2.28 5.39 30.61 0.17 -2.12 16 26 C -0.10 -1.11 4.63 30.59 0.14 -0.97 16 27 C -0.09 -0.71 3.19 -10.78 -0.03 -0.75 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 C -0.15 -1.02 8.50 71.98 0.61 -0.40 16 30 C -0.11 -1.08 4.74 30.61 0.14 -0.93 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 36 H 0.12 1.34 6.43 -2.39 -0.02 1.33 16 37 H 0.42 4.81 8.02 -92.71 -0.74 4.07 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.37 20.57 7.80 -92.70 -0.72 19.84 16 43 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.64 7.57 -2.39 -0.02 0.63 16 50 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 52 H 0.06 0.43 4.81 -2.38 -0.01 0.42 16 53 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 54 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -72.16 405.40 2.22 -69.94 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.61 Total: 31.47 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.42 Total: -14.65 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.57 Total: -115.78 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -72.16 2.22 -69.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034798235.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.600 kcal (2) G-P(sol) polarization free energy of solvation -72.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds