Wall clock time and date at job start Tue Mar 31 2020 15:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52830 * 1 3 3 H 1.11151 * 106.59552 * 2 1 4 4 C 1.52211 * 110.63727 * 244.04416 * 2 1 3 5 5 C 1.52766 * 110.75535 * 285.43214 * 4 2 1 6 6 H 1.08692 * 110.34659 * 60.52981 * 5 4 2 7 7 C 1.53352 * 109.10609 * 180.02562 * 5 4 2 8 8 C 1.50694 * 109.46952 * 295.00151 * 7 5 4 9 9 O 1.21279 * 120.00064 * 359.97438 * 8 7 5 10 10 N 1.34786 * 119.99811 * 180.02562 * 8 7 5 11 11 C 1.46495 * 119.99743 * 359.97438 * 10 8 7 12 12 C 1.46498 * 119.99613 * 179.97438 * 10 8 7 13 13 C 1.53948 * 113.73725 * 216.66787 * 12 10 8 14 14 N 1.47585 * 86.11751 * 222.05159 * 13 12 10 15 15 C 1.36935 * 134.49025 * 204.64455 * 14 13 12 16 16 H 1.08001 * 120.00025 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00133 * 359.97438 * 15 14 13 18 18 N 1.31615 * 119.99810 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47394 * 89.99839 * 19 17 15 21 21 H 1.48506 * 109.47319 * 209.99722 * 19 17 15 22 22 H 1.48503 * 109.47469 * 329.99717 * 19 17 15 23 23 C 1.47580 * 91.01264 * 24.63997 * 14 13 12 24 24 C 1.52706 * 108.87832 * 299.10230 * 5 4 2 25 25 C 1.52461 * 110.81822 * 61.66456 * 24 5 4 26 26 C 1.54409 * 107.73242 * 188.38548 * 25 24 5 27 27 C 1.53114 * 110.03260 * 71.57954 * 25 24 5 28 28 C 1.51514 * 111.70631 * 117.01109 * 2 1 3 29 29 H 1.08998 * 109.47506 * 302.98854 * 1 2 3 30 30 H 1.09003 * 109.46791 * 62.99142 * 1 2 3 31 31 H 1.08997 * 109.47257 * 182.98422 * 1 2 3 32 32 H 1.09344 * 109.54056 * 45.89794 * 4 2 1 33 33 H 1.09319 * 109.58825 * 164.85110 * 4 2 1 34 34 H 1.09008 * 109.46782 * 54.99992 * 7 5 4 35 35 H 1.08996 * 109.47165 * 174.99472 * 7 5 4 36 36 H 1.08998 * 109.47261 * 90.00754 * 11 10 8 37 37 H 1.09000 * 109.46988 * 210.00223 * 11 10 8 38 38 H 1.08997 * 109.47507 * 330.00354 * 11 10 8 39 39 H 1.08992 * 112.94555 * 348.40535 * 12 10 8 40 40 H 1.08994 * 113.76936 * 336.35013 * 13 12 10 41 41 H 1.08996 * 113.76991 * 107.74815 * 13 12 10 42 42 H 0.97005 * 119.99907 * 179.97438 * 18 17 15 43 43 H 1.09000 * 113.76826 * 221.05611 * 23 14 13 44 44 H 1.08997 * 113.76722 * 89.66546 * 23 14 13 45 45 H 1.09304 * 109.29148 * 301.00683 * 24 5 4 46 46 H 1.09314 * 109.27284 * 182.31773 * 24 5 4 47 47 H 1.09002 * 109.47340 * 181.67180 * 26 25 24 48 48 H 1.09001 * 109.46740 * 61.67313 * 26 25 24 49 49 H 1.09004 * 109.47166 * 301.67408 * 26 25 24 50 50 H 1.08994 * 109.47251 * 177.00455 * 27 25 24 51 51 H 1.09003 * 109.46959 * 297.00711 * 27 25 24 52 52 H 1.09000 * 109.46919 * 57.00682 * 27 25 24 53 53 H 1.10217 * 108.81401 * 319.72565 * 28 2 1 54 54 H 1.10240 * 108.73792 * 204.66020 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8458 1.0652 0.0000 4 6 2.0648 -0.6234 -1.2808 5 6 1.8998 -2.1419 -1.2541 6 1 0.8492 -2.4065 -1.1673 7 6 2.4517 -2.7298 -2.5585 8 6 1.6146 -2.2538 -3.7176 9 8 0.6703 -1.5184 -3.5220 10 7 1.9147 -2.6463 -4.9716 11 6 3.0550 -3.5352 -5.2078 12 6 1.1005 -2.1840 -6.0984 13 6 0.9064 -3.2433 -7.1985 14 7 1.1289 -2.1434 -8.1570 15 6 0.7706 -1.9182 -9.4593 16 1 1.0671 -1.0032 -9.9505 17 6 0.0264 -2.8661 -10.1483 18 7 -0.3345 -3.9814 -9.5499 19 14 -0.4617 -2.5591 -11.9250 20 1 0.5907 -3.0925 -12.8268 21 1 -1.7497 -3.2414 -12.2095 22 1 -0.6143 -1.0994 -12.1514 23 6 1.8926 -1.3838 -7.1482 24 6 2.6918 -2.7043 -0.0757 25 6 2.1616 -2.1560 1.2444 26 6 3.1346 -2.5945 2.3604 27 6 0.7962 -2.7736 1.5583 28 6 2.0887 -0.6393 1.2542 29 1 -0.3634 0.5595 0.8619 30 1 -0.3633 0.4667 -0.9156 31 1 -0.3633 -1.0262 0.0535 32 1 1.5226 -0.2185 -2.1396 33 1 3.1243 -0.3782 -1.3919 34 1 3.4826 -2.4034 -2.6966 35 1 2.4187 -3.8181 -2.5091 36 1 2.7236 -4.5724 -5.1578 37 1 3.4737 -3.3347 -6.1939 38 1 3.8160 -3.3598 -4.4474 39 1 0.1756 -1.7006 -5.7842 40 1 1.6850 -4.0059 -7.2164 41 1 -0.1000 -3.6603 -7.2342 42 1 -0.8549 -4.6436 -10.0312 43 1 1.6735 -0.3160 -7.1438 44 1 2.9609 -1.6000 -7.1513 45 1 3.7447 -2.4322 -0.1855 46 1 2.6119 -3.7945 -0.0748 47 1 2.7656 -2.2417 3.3235 48 1 4.1201 -2.1692 2.1709 49 1 3.2048 -3.6822 2.3745 50 1 0.4502 -2.4165 2.5283 51 1 0.0809 -2.4843 0.7883 52 1 0.8854 -3.8597 1.5818 53 1 1.4806 -0.3222 2.1170 54 1 3.1011 -0.2413 1.4325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044059537.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:47 Heat of formation + Delta-G solvation = -27.075583 kcal Electronic energy + Delta-G solvation = -28776.359775 eV Core-core repulsion = 25134.050196 eV Total energy + Delta-G solvation = -3642.309579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45663 -40.40434 -39.10070 -35.87282 -35.05945 -34.31305 -33.87091 -29.93273 -28.51099 -28.27688 -27.78789 -27.33882 -26.98410 -26.62262 -24.95304 -22.58094 -21.53616 -20.74684 -19.75339 -18.93587 -18.78734 -17.99832 -17.24122 -16.80534 -16.55972 -16.26827 -15.75016 -15.63025 -15.19201 -15.15327 -14.80715 -14.62192 -14.30643 -14.04295 -13.86066 -13.60191 -13.50543 -13.29850 -13.20318 -13.13971 -13.01932 -12.94357 -12.83909 -12.61055 -12.55993 -12.42680 -12.30639 -12.06879 -11.98696 -11.91147 -11.81942 -11.60268 -11.56596 -11.50056 -11.03424 -10.95359 -10.89436 -10.60622 -10.38367 -9.47331 -8.98180 -7.94906 -5.29393 1.44166 1.46673 1.55430 1.74934 2.07220 2.47761 3.24620 3.39710 3.64552 3.71135 3.75845 3.84634 3.94383 4.17314 4.24716 4.27375 4.30518 4.34690 4.36838 4.39775 4.47536 4.59610 4.65370 4.71428 4.73563 4.79802 4.82545 4.84875 4.86035 4.90589 4.95203 4.98065 5.00876 5.05309 5.10969 5.13670 5.17351 5.17631 5.20801 5.25964 5.31439 5.31731 5.42201 5.44556 5.56225 5.58420 5.63947 5.71397 5.74735 5.76191 5.87815 6.58733 6.87048 7.32259 7.55042 8.49038 9.22171 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029266 B = 0.002407 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.525797 B =11629.554558 C =11926.382220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.055 0.945 4 C -0.111 4.111 5 C -0.063 4.063 6 H 0.057 0.943 7 C -0.128 4.128 8 C 0.503 3.497 9 O -0.580 6.580 10 N -0.605 5.605 11 C 0.074 3.926 12 C 0.117 3.883 13 C 0.162 3.838 14 N -0.638 5.638 15 C -0.237 4.237 16 H 0.085 0.915 17 C -0.066 4.066 18 N -0.953 5.953 19 Si 0.983 3.017 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.115 3.885 24 C -0.096 4.096 25 C -0.057 4.057 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.093 4.093 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.250 0.750 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.047 0.953 52 H 0.057 0.943 53 H 0.059 0.941 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 1.338 25.413 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.148 4.148 5 C -0.082 4.082 6 H 0.075 0.925 7 C -0.168 4.168 8 C 0.294 3.706 9 O -0.461 6.461 10 N -0.337 5.337 11 C -0.068 4.068 12 C 0.011 3.989 13 C 0.036 3.964 14 N -0.365 5.365 15 C -0.365 4.365 16 H 0.103 0.897 17 C -0.259 4.259 18 N -0.602 5.602 19 Si 0.810 3.190 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.194 1.194 23 C -0.011 4.011 24 C -0.133 4.133 25 C -0.057 4.057 26 C -0.198 4.198 27 C -0.203 4.203 28 C -0.131 4.131 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.066 0.934 52 H 0.076 0.924 53 H 0.078 0.922 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.443 1.673 25.229 27.356 hybrid contribution -0.758 0.040 -1.558 1.733 sum 9.685 1.713 23.670 25.632 Atomic orbital electron populations 1.21889 0.96066 1.01678 1.00546 1.20722 0.95143 0.99163 0.94864 0.92697 1.21536 1.00552 0.95448 0.97301 1.20719 0.99617 0.95074 0.92811 0.92469 1.21950 1.00283 1.03370 0.91154 1.21560 0.84988 0.79644 0.84406 1.90636 1.31966 1.38460 1.85005 1.48083 1.30917 1.48794 1.05930 1.21999 0.87791 0.93436 1.03583 1.23169 0.94605 0.96788 0.84316 1.22472 0.98752 0.90915 0.84288 1.45995 1.61234 1.19612 1.09621 1.19389 1.27716 1.02693 0.86699 0.89698 1.25681 1.01055 0.96379 1.02817 1.70008 1.42910 1.09687 1.37552 0.85019 0.76988 0.77804 0.79148 1.20897 1.22005 1.19364 1.23065 0.95673 0.95995 0.86399 1.21504 0.99463 1.00229 0.92134 1.20341 0.95653 0.94414 0.95302 1.22238 0.98625 1.01385 0.97581 1.22058 0.96597 1.00535 1.01062 1.21215 1.01203 0.94352 0.96313 0.92289 0.94738 0.92699 0.93175 0.91995 0.86530 0.86900 0.91803 0.91693 0.87380 0.89400 0.94389 0.94573 0.94100 0.93502 0.92315 0.90774 0.91092 0.92703 0.92323 0.92271 0.92579 0.93394 0.92404 0.92225 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.91 71.93 0.64 -2.48 16 2 C -0.08 -1.54 2.60 -11.60 -0.03 -1.57 16 3 H 0.05 1.04 8.29 -1.22 -0.01 1.03 16 4 C -0.11 -2.41 4.36 30.26 0.13 -2.28 16 5 C -0.06 -1.23 1.66 -10.85 -0.02 -1.25 16 6 H 0.06 1.41 6.20 -2.55 -0.02 1.39 16 7 C -0.13 -2.39 3.71 29.96 0.11 -2.28 16 8 C 0.50 15.00 7.38 87.65 0.65 15.65 16 9 O -0.58 -22.19 13.43 -3.03 -0.04 -22.23 16 10 N -0.61 -18.76 3.09 -828.32 -2.56 -21.32 16 11 C 0.07 1.66 8.84 127.77 1.13 2.79 16 12 C 0.12 4.77 4.40 46.75 0.21 4.98 16 13 C 0.16 7.86 6.93 86.48 0.60 8.46 16 14 N -0.64 -33.68 3.70 -717.29 -2.65 -36.34 16 15 C -0.24 -13.59 10.70 84.03 0.90 -12.69 16 16 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 17 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 18 N -0.95 -58.24 11.38 21.65 0.25 -57.99 16 19 Si 0.98 46.26 29.55 68.60 2.03 48.28 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 C 0.11 4.82 8.46 86.48 0.73 5.55 16 24 C -0.10 -1.31 3.77 30.32 0.11 -1.20 16 25 C -0.06 -0.77 0.71 -52.22 -0.04 -0.81 16 26 C -0.14 -1.49 8.10 72.46 0.59 -0.90 16 27 C -0.15 -2.15 8.00 72.02 0.58 -1.57 16 28 C -0.09 -1.38 4.12 29.73 0.12 -1.26 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.05 1.23 4.85 -2.39 -0.01 1.21 16 32 H 0.05 1.47 5.80 -2.20 -0.01 1.46 16 33 H 0.06 1.18 8.17 -2.22 -0.02 1.16 16 34 H 0.12 1.59 7.40 -2.38 -0.02 1.57 16 35 H 0.11 1.65 8.11 -2.39 -0.02 1.63 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.64 6.36 -2.39 -0.02 1.63 16 38 H 0.11 1.51 6.44 -2.39 -0.02 1.50 16 39 H 0.09 4.07 7.24 -2.39 -0.02 4.05 16 40 H 0.04 1.78 6.71 -2.39 -0.02 1.76 16 41 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 42 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.22 6.97 -2.39 -0.02 2.20 16 45 H 0.07 0.85 8.12 -2.23 -0.02 0.84 16 46 H 0.07 0.86 8.13 -2.22 -0.02 0.84 16 47 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.56 8.05 -2.39 -0.02 0.55 16 49 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 51 H 0.05 0.86 4.57 -2.39 -0.01 0.85 16 52 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.06 0.85 7.98 -1.73 -0.01 0.84 16 54 H 0.06 0.83 7.92 -1.72 -0.01 0.82 16 Total: -1.00 -71.52 396.29 4.77 -66.75 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.88 Total: 17.07 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.88 Total: 5.78 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.97 Total: -115.65 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.52 4.77 -66.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044059537.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.672 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds