Wall clock time and date at job start Tue Mar 31 2020 15:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52833 * 1 3 3 H 1.11136 * 106.60735 * 2 1 4 4 C 1.52206 * 110.63060 * 115.96669 * 2 1 3 5 5 C 1.52773 * 110.73393 * 74.48212 * 4 2 1 6 6 H 1.08683 * 110.34233 * 299.51861 * 5 4 2 7 7 C 1.53358 * 109.10889 * 179.97438 * 5 4 2 8 8 C 1.50705 * 109.46851 * 66.13495 * 7 5 4 9 9 O 1.21277 * 119.99773 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99923 * 179.97438 * 8 7 5 11 11 C 1.46507 * 120.00036 * 359.97438 * 10 8 7 12 12 C 1.46493 * 120.00042 * 179.97438 * 10 8 7 13 13 C 1.53946 * 113.74686 * 218.74042 * 12 10 8 14 14 N 1.47809 * 86.03803 * 222.08489 * 13 12 10 15 15 C 1.36935 * 134.45430 * 204.63947 * 14 13 12 16 16 H 1.07999 * 119.99899 * 179.87163 * 15 14 13 17 17 C 1.38807 * 120.00127 * 359.87074 * 15 14 13 18 18 N 1.31619 * 120.00100 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00382 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46604 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47400 * 119.99564 * 19 17 15 22 22 H 1.48494 * 109.47148 * 240.00201 * 19 17 15 23 23 C 1.47580 * 91.05202 * 24.55035 * 14 13 12 24 24 C 1.52720 * 108.88437 * 60.95080 * 5 4 2 25 25 C 1.52473 * 110.81665 * 298.36446 * 24 5 4 26 26 C 1.54414 * 107.71315 * 171.53316 * 25 24 5 27 27 C 1.53125 * 110.03038 * 288.32739 * 25 24 5 28 28 C 1.51525 * 111.71378 * 242.97851 * 2 1 3 29 29 H 1.08995 * 109.47050 * 177.01909 * 1 2 3 30 30 H 1.08998 * 109.47215 * 297.02778 * 1 2 3 31 31 H 1.09008 * 109.47142 * 57.02075 * 1 2 3 32 32 H 1.09316 * 109.58676 * 195.02252 * 4 2 1 33 33 H 1.09332 * 109.56145 * 314.00348 * 4 2 1 34 34 H 1.09001 * 109.47124 * 186.13024 * 7 5 4 35 35 H 1.08996 * 109.47031 * 306.13428 * 7 5 4 36 36 H 1.09001 * 109.46727 * 89.99676 * 11 10 8 37 37 H 1.08997 * 109.46767 * 210.00043 * 11 10 8 38 38 H 1.09002 * 109.47052 * 330.00319 * 11 10 8 39 39 H 1.08998 * 112.94399 * 350.33823 * 12 10 8 40 40 H 1.09000 * 113.76510 * 336.35344 * 13 12 10 41 41 H 1.08997 * 113.76907 * 107.74085 * 13 12 10 42 42 H 0.97000 * 119.99972 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.76732 * 221.15045 * 23 14 13 44 44 H 1.09000 * 113.77007 * 89.75531 * 23 14 13 45 45 H 1.09302 * 109.26340 * 177.72360 * 24 5 4 46 46 H 1.09293 * 109.28074 * 59.02760 * 24 5 4 47 47 H 1.08996 * 109.47540 * 59.99909 * 26 25 24 48 48 H 1.08999 * 109.47073 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47169 * 299.99509 * 26 25 24 50 50 H 1.08996 * 109.47513 * 59.99576 * 27 25 24 51 51 H 1.09000 * 109.47032 * 180.02562 * 27 25 24 52 52 H 1.09007 * 109.46523 * 299.99669 * 27 25 24 53 53 H 1.10244 * 108.74356 * 155.37742 * 28 2 1 54 54 H 1.10209 * 108.80321 * 40.30256 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8460 1.0650 0.0000 4 6 2.0646 -0.6237 1.2806 5 6 1.8974 -2.1420 1.2540 6 1 0.8465 -2.4049 1.1670 7 6 2.4490 -2.7308 2.5582 8 6 1.5964 -2.2761 3.7147 9 8 0.6423 -1.5538 3.5175 10 7 1.8936 -2.6729 4.9680 11 6 3.0451 -3.5468 5.2060 12 6 1.0651 -2.2305 6.0922 13 6 1.8693 -1.9009 7.3629 14 7 0.7966 -2.6016 8.0998 15 6 0.3177 -2.5436 9.3814 16 1 -0.5025 -3.1793 9.6806 17 6 0.8865 -1.6679 10.2959 18 7 1.8865 -0.8935 9.9314 19 14 0.2338 -1.5893 12.0445 20 1 -0.8846 -2.5540 12.1991 21 1 1.3212 -1.9349 12.9948 22 1 -0.2547 -0.2162 12.3292 23 6 0.4477 -3.3866 6.8998 24 6 2.6891 -2.7059 0.0760 25 6 2.1607 -2.1564 -1.2445 26 6 3.1349 -2.5952 -2.3593 27 6 0.7952 -2.7731 -1.5604 28 6 2.0889 -0.6396 -1.2541 29 1 -0.3633 -1.0262 -0.0534 30 1 -0.3633 0.4670 0.9154 31 1 -0.3634 0.5594 -0.8621 32 1 3.1246 -0.3804 1.3908 33 1 1.5238 -0.2179 2.1398 34 1 2.4330 -3.8192 2.5009 35 1 3.4737 -2.3897 2.7060 36 1 3.9321 -2.9387 5.3835 37 1 2.8527 -4.1720 6.0778 38 1 3.2073 -4.1798 4.3335 39 1 0.3484 -1.4580 5.8137 40 1 2.8362 -2.4015 7.4130 41 1 1.9293 -0.8345 7.5805 42 1 2.2837 -0.2813 10.5704 43 1 -0.6254 -3.5043 6.7485 44 1 0.9960 -4.3247 6.8137 45 1 2.6069 -3.7958 0.0750 46 1 3.7423 -2.4359 0.1867 47 1 3.1817 -3.6836 -2.3934 48 1 2.7830 -2.2168 -3.3190 49 1 4.1276 -2.1952 -2.1526 50 1 0.0928 -2.5282 -0.7637 51 1 0.4265 -2.3747 -2.5056 52 1 0.8947 -3.8560 -1.6370 53 1 3.1017 -0.2421 -1.4321 54 1 1.4812 -0.3221 -2.1169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044059539.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:51 Heat of formation + Delta-G solvation = -27.725581 kcal Electronic energy + Delta-G solvation = -28774.499908 eV Core-core repulsion = 25132.162143 eV Total energy + Delta-G solvation = -3642.337765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.45087 -40.40128 -39.09159 -35.86795 -35.06688 -34.31501 -33.86923 -29.93462 -28.50189 -28.27395 -27.77749 -27.34466 -26.99369 -26.63490 -24.95379 -22.58133 -21.53488 -20.75424 -19.74974 -18.92553 -18.80107 -17.99334 -17.22938 -16.83963 -16.56221 -16.27210 -15.77740 -15.53702 -15.21104 -15.17248 -14.85831 -14.53166 -14.33688 -14.03892 -13.90517 -13.58830 -13.49578 -13.32765 -13.20323 -13.15256 -12.94992 -12.94705 -12.83643 -12.65144 -12.55584 -12.41509 -12.34687 -12.06119 -11.94198 -11.91237 -11.81626 -11.60969 -11.56443 -11.52158 -11.03216 -10.95280 -10.90932 -10.61586 -10.40415 -9.47289 -8.98196 -7.94989 -5.29430 1.44096 1.45831 1.56098 1.74953 2.07170 2.47548 3.24579 3.39080 3.64989 3.70856 3.75600 3.83472 3.93985 4.17081 4.24788 4.27020 4.30375 4.34384 4.37238 4.40313 4.46216 4.59199 4.67033 4.70943 4.72949 4.80490 4.81786 4.84460 4.86126 4.90994 4.94643 4.96887 5.01032 5.05387 5.11648 5.13233 5.17585 5.17706 5.20598 5.25867 5.30787 5.31366 5.42362 5.44483 5.54901 5.58099 5.63438 5.71533 5.74224 5.75562 5.87339 6.58665 6.86819 7.32135 7.54982 8.48868 9.22291 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.002418 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.625769 B =11578.895299 C =11897.809469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.052 0.948 4 C -0.111 4.111 5 C -0.063 4.063 6 H 0.061 0.939 7 C -0.128 4.128 8 C 0.503 3.497 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.074 3.926 12 C 0.116 3.884 13 C 0.162 3.838 14 N -0.638 5.638 15 C -0.235 4.235 16 H 0.086 0.914 17 C -0.067 4.067 18 N -0.953 5.953 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.115 3.885 24 C -0.096 4.096 25 C -0.057 4.057 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.093 4.093 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.250 0.750 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.047 0.953 51 H 0.055 0.945 52 H 0.059 0.941 53 H 0.061 0.939 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -6.134 -26.407 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.081 4.081 6 H 0.079 0.921 7 C -0.168 4.168 8 C 0.294 3.706 9 O -0.461 6.461 10 N -0.337 5.337 11 C -0.068 4.068 12 C 0.011 3.989 13 C 0.036 3.964 14 N -0.365 5.365 15 C -0.363 4.363 16 H 0.104 0.896 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.810 3.190 20 H -0.189 1.189 21 H -0.216 1.216 22 H -0.220 1.220 23 C -0.011 4.011 24 C -0.133 4.133 25 C -0.057 4.057 26 C -0.198 4.198 27 C -0.201 4.201 28 C -0.131 4.131 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.074 0.926 52 H 0.078 0.922 53 H 0.079 0.921 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.220 -5.665 -26.204 27.313 hybrid contribution -0.405 0.559 1.635 1.775 sum 4.815 -5.106 -24.569 25.552 Atomic orbital electron populations 1.21874 0.95889 1.01792 1.00522 1.20721 0.95287 0.99056 0.94845 0.92940 1.21524 1.00358 0.95771 0.97221 1.20725 0.99798 0.94782 0.92835 0.92087 1.21959 0.99923 1.03692 0.91199 1.21566 0.85194 0.79424 0.84429 1.90640 1.31739 1.38838 1.84910 1.48081 1.30040 1.49582 1.06021 1.22007 0.86959 0.93991 1.03872 1.23171 0.93959 0.97196 0.84590 1.22503 0.91263 0.96801 0.85873 1.46050 1.37986 1.44779 1.07700 1.19428 1.12889 1.18292 0.85696 0.89645 1.25683 0.98883 0.98936 1.02507 1.70016 1.27398 1.27574 1.35220 0.84953 0.77600 0.77304 0.79111 1.18853 1.21555 1.21971 1.23066 0.98523 0.94819 0.84675 1.21506 0.99365 1.00359 0.92099 1.20348 0.95785 0.94283 0.95301 1.22237 0.98563 1.01433 0.97604 1.22045 0.96424 1.00611 1.01034 1.21224 1.01113 0.94495 0.96253 0.92493 0.94830 0.92256 0.92290 0.93530 0.86290 0.87099 0.91914 0.91605 0.87315 0.89405 0.94438 0.94650 0.94134 0.93407 0.92190 0.90784 0.91009 0.92137 0.92702 0.92469 0.93369 0.92629 0.92198 0.92073 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.91 71.93 0.64 -2.48 16 2 C -0.08 -1.60 2.60 -11.59 -0.03 -1.63 16 3 H 0.05 1.05 8.29 -1.23 -0.01 1.04 16 4 C -0.11 -2.52 4.37 30.26 0.13 -2.39 16 5 C -0.06 -1.21 1.66 -10.84 -0.02 -1.23 16 6 H 0.06 1.46 6.09 -2.55 -0.02 1.44 16 7 C -0.13 -2.40 3.70 29.97 0.11 -2.29 16 8 C 0.50 15.02 7.38 87.66 0.65 15.67 16 9 O -0.58 -22.28 13.49 -3.02 -0.04 -22.32 16 10 N -0.61 -18.76 3.09 -828.31 -2.56 -21.32 16 11 C 0.07 1.65 8.84 127.77 1.13 2.78 16 12 C 0.12 4.76 4.40 46.75 0.21 4.96 16 13 C 0.16 7.87 6.97 86.44 0.60 8.47 16 14 N -0.64 -33.67 3.70 -716.69 -2.65 -36.32 16 15 C -0.23 -13.46 10.70 84.03 0.90 -12.56 16 16 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 17 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 18 N -0.95 -58.37 11.39 21.65 0.25 -58.12 16 19 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C 0.12 4.81 8.46 86.49 0.73 5.55 16 24 C -0.10 -1.30 3.77 30.33 0.11 -1.18 16 25 C -0.06 -0.76 0.71 -52.21 -0.04 -0.80 16 26 C -0.14 -1.48 8.08 72.46 0.59 -0.89 16 27 C -0.14 -2.03 8.00 72.02 0.58 -1.45 16 28 C -0.09 -1.42 4.12 29.73 0.12 -1.30 16 29 H 0.06 1.25 4.92 -2.39 -0.01 1.24 16 30 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.22 8.17 -2.22 -0.02 1.20 16 33 H 0.05 1.42 5.90 -2.21 -0.01 1.41 16 34 H 0.12 1.57 7.40 -2.39 -0.02 1.55 16 35 H 0.11 1.67 8.11 -2.39 -0.02 1.65 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.65 6.35 -2.39 -0.02 1.64 16 38 H 0.11 1.50 6.44 -2.39 -0.02 1.49 16 39 H 0.09 4.07 7.22 -2.39 -0.02 4.06 16 40 H 0.04 1.76 6.83 -2.39 -0.02 1.75 16 41 H 0.04 1.98 7.17 -2.39 -0.02 1.97 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.06 2.24 6.84 -2.39 -0.02 2.23 16 45 H 0.07 0.84 8.13 -2.23 -0.02 0.82 16 46 H 0.07 0.86 8.11 -2.23 -0.02 0.84 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.57 8.09 -2.39 -0.02 0.55 16 50 H 0.05 0.83 4.62 -2.39 -0.01 0.82 16 51 H 0.05 0.72 8.08 -2.39 -0.02 0.71 16 52 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 53 H 0.06 0.85 7.94 -1.72 -0.01 0.84 16 54 H 0.06 0.87 7.94 -1.74 -0.01 0.86 16 Total: -1.00 -71.81 396.40 4.77 -67.04 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.87 Total: 16.92 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.88 Total: 5.79 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.97 Total: -115.77 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.04 Total: -22.32 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -71.81 4.77 -67.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044059539.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.314 kcal (2) G-P(sol) polarization free energy of solvation -71.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds