Wall clock time and date at job start Tue Mar 31 2020 15:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.52996 * 109.47370 * 239.99922 * 2 1 3 5 5 C 1.52998 * 109.47085 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46939 * 299.99319 * 5 4 2 7 7 C 1.52996 * 109.47085 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47404 * 64.99658 * 7 5 4 9 9 O 1.21278 * 120.00028 * 0.02562 * 8 7 5 10 10 N 1.34780 * 120.00196 * 179.97438 * 8 7 5 11 11 C 1.46503 * 120.00055 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00193 * 179.97438 * 10 8 7 13 13 C 1.53495 * 114.20958 * 240.00392 * 12 10 8 14 14 N 1.47057 * 87.98448 * 220.14553 * 13 12 10 15 15 C 1.36941 * 136.06078 * 207.07768 * 14 13 12 16 16 H 1.08003 * 119.99636 * 6.50318 * 15 14 13 17 17 C 1.38809 * 120.00308 * 186.50022 * 15 14 13 18 18 N 1.31618 * 120.00309 * 6.42234 * 17 15 14 19 19 Si 1.86804 * 119.99744 * 186.42092 * 17 15 14 20 20 H 1.48495 * 109.47284 * 84.99114 * 19 17 15 21 21 H 1.48497 * 109.47368 * 324.98663 * 19 17 15 22 22 H 1.48503 * 109.46695 * 204.99018 * 19 17 15 23 23 C 1.47069 * 87.88643 * 27.34248 * 14 13 12 24 24 C 1.52999 * 109.47377 * 59.99479 * 5 4 2 25 25 C 1.52996 * 109.47438 * 300.00305 * 24 5 4 26 26 C 1.52999 * 109.47438 * 180.02562 * 25 24 5 27 27 C 1.53005 * 109.46957 * 300.00164 * 25 24 5 28 28 C 1.52998 * 109.47085 * 59.99516 * 25 24 5 29 29 H 1.09000 * 109.47748 * 299.99950 * 1 2 3 30 30 H 1.08997 * 109.47191 * 60.00640 * 1 2 3 31 31 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47422 * 59.99579 * 4 2 1 33 33 H 1.09007 * 109.46977 * 299.99414 * 4 2 1 34 34 H 1.09000 * 109.47384 * 304.99614 * 7 5 4 35 35 H 1.09007 * 109.47399 * 184.99846 * 7 5 4 36 36 H 1.09005 * 109.46769 * 269.99752 * 11 10 8 37 37 H 1.09000 * 109.47216 * 29.99592 * 11 10 8 38 38 H 1.08988 * 109.47141 * 149.99799 * 11 10 8 39 39 H 1.09008 * 113.27790 * 13.06663 * 12 10 8 40 40 H 1.08997 * 113.47010 * 105.36190 * 13 12 10 41 41 H 1.08997 * 113.51510 * 334.93668 * 13 12 10 42 42 H 0.96994 * 119.99922 * 179.97438 * 18 17 15 43 43 H 1.08996 * 113.47099 * 87.43808 * 23 14 13 44 44 H 1.08997 * 113.46798 * 217.87691 * 23 14 13 45 45 H 1.09005 * 109.46838 * 60.00637 * 24 5 4 46 46 H 1.09007 * 109.46722 * 179.97438 * 24 5 4 47 47 H 1.09007 * 109.46722 * 59.99516 * 26 25 24 48 48 H 1.09000 * 109.47363 * 179.97438 * 26 25 24 49 49 H 1.09005 * 109.46838 * 300.00332 * 26 25 24 50 50 H 1.08997 * 109.47482 * 59.99499 * 27 25 24 51 51 H 1.09000 * 109.47113 * 180.02562 * 27 25 24 52 52 H 1.09008 * 109.46784 * 299.99738 * 27 25 24 53 53 H 1.09007 * 109.46527 * 60.00564 * 28 25 24 54 54 H 1.09000 * 109.47003 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 1 3.9337 0.3058 -1.2487 7 6 4.0801 -1.4424 -2.4983 8 6 3.6819 -0.6634 -3.7253 9 8 3.0526 0.3671 -3.6116 10 7 4.0261 -1.1112 -4.9491 11 6 4.7868 -2.3557 -5.0864 12 6 3.6385 -0.3542 -6.1419 13 6 2.7496 -1.1337 -7.1209 14 7 3.5182 -0.5290 -8.2191 15 6 3.2812 -0.2097 -9.5296 16 1 2.2874 -0.3136 -9.9394 17 6 4.3182 0.2474 -10.3311 18 7 5.5514 0.2547 -9.8712 19 14 3.9635 0.8523 -12.0625 20 1 3.5601 2.2806 -12.0150 21 1 2.8644 0.0469 -12.6528 22 1 5.1841 0.7101 -12.8962 23 6 4.6557 -0.4241 -7.2928 24 6 4.0795 -1.4432 0.0005 25 6 3.5695 -0.7220 1.2497 26 6 4.0795 -1.4431 2.4990 27 6 4.0799 0.7204 1.2499 28 6 2.0395 -0.7215 1.2493 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 1.6768 -1.7490 -1.2491 34 1 3.6452 -2.4408 -2.5449 35 1 5.1664 -1.5211 -2.4545 36 1 5.8537 -2.1333 -5.0679 37 1 4.5407 -3.0249 -4.2619 38 1 4.5319 -2.8349 -6.0316 39 1 3.2814 0.6509 -5.9171 40 1 1.7049 -0.8235 -7.0999 41 1 2.8695 -2.2148 -7.0509 42 1 6.2761 0.5738 -10.4314 43 1 5.2788 -1.3180 -7.2676 44 1 5.2348 0.4906 -7.4184 45 1 3.7159 -2.4708 0.0003 46 1 5.1696 -1.4439 0.0005 47 1 5.1695 -1.4430 2.4989 48 1 3.7165 -0.9290 3.3889 49 1 3.7162 -2.4708 2.4990 50 1 3.7169 1.2344 0.3599 51 1 3.7169 1.2342 2.1401 52 1 5.1699 0.7201 1.2501 53 1 1.6759 -1.7491 1.2492 54 1 1.6761 -0.2072 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044059540.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:55 Heat of formation + Delta-G solvation = -25.672111 kcal Electronic energy + Delta-G solvation = -28641.933195 eV Core-core repulsion = 24999.684475 eV Total energy + Delta-G solvation = -3642.248720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.52686 -40.55582 -39.23354 -35.90894 -34.94638 -34.43151 -33.96564 -29.98661 -28.47461 -28.10858 -27.83026 -27.38284 -27.06686 -26.44956 -25.02481 -22.32661 -21.36294 -20.88036 -19.81986 -19.33574 -18.83894 -17.99031 -17.31028 -16.80189 -16.69587 -15.99854 -15.79317 -15.76366 -15.57070 -15.04592 -14.73910 -14.56609 -14.35833 -13.86401 -13.80145 -13.61767 -13.39167 -13.35546 -13.19229 -13.11619 -13.04887 -12.92054 -12.88959 -12.67377 -12.58266 -12.53407 -12.43286 -12.20206 -12.08871 -11.98783 -11.76066 -11.61618 -11.51670 -11.39826 -11.04673 -10.92860 -10.90244 -10.74219 -10.40864 -9.47475 -9.00986 -7.98986 -5.32131 1.43610 1.47240 1.54751 1.72608 2.03451 2.46799 3.24856 3.44695 3.61447 3.71904 3.76239 3.78963 3.94260 4.13561 4.20468 4.27504 4.29274 4.36268 4.42809 4.45565 4.50614 4.61165 4.66631 4.71008 4.72940 4.79872 4.81321 4.82089 4.86912 4.88379 4.91962 4.96409 5.00890 5.05257 5.07379 5.11255 5.13256 5.18825 5.21959 5.23912 5.27869 5.32409 5.38946 5.45351 5.47623 5.58045 5.61716 5.67927 5.71303 5.77314 5.83484 6.56549 6.83446 7.29974 7.51706 8.51385 9.20114 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.002396 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.380622 B =11685.731762 C =12113.036516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.055 0.945 4 C -0.110 4.110 5 C -0.069 4.069 6 H 0.057 0.943 7 C -0.126 4.126 8 C 0.505 3.495 9 O -0.582 6.582 10 N -0.602 5.602 11 C 0.073 3.927 12 C 0.113 3.887 13 C 0.112 3.888 14 N -0.636 5.636 15 C -0.235 4.235 16 H 0.087 0.913 17 C -0.064 4.064 18 N -0.952 5.952 19 Si 0.984 3.016 20 H -0.285 1.285 21 H -0.266 1.266 22 H -0.291 1.291 23 C 0.161 3.839 24 C -0.096 4.096 25 C -0.064 4.064 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.095 4.095 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.251 0.749 43 H 0.040 0.960 44 H 0.024 0.976 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.046 0.954 51 H 0.054 0.946 52 H 0.055 0.945 53 H 0.067 0.933 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 -8.207 26.638 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.088 4.088 6 H 0.075 0.925 7 C -0.165 4.165 8 C 0.295 3.705 9 O -0.462 6.462 10 N -0.334 5.334 11 C -0.069 4.069 12 C 0.007 3.993 13 C -0.014 4.014 14 N -0.363 5.363 15 C -0.362 4.362 16 H 0.105 0.895 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.812 3.188 20 H -0.212 1.212 21 H -0.191 1.191 22 H -0.217 1.217 23 C 0.035 3.965 24 C -0.134 4.134 25 C -0.064 4.064 26 C -0.194 4.194 27 C -0.203 4.203 28 C -0.133 4.133 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.074 0.926 53 H 0.086 0.914 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.906 -7.592 26.358 27.583 hybrid contribution 0.057 0.709 -1.603 1.754 sum -2.849 -6.883 24.754 25.851 Atomic orbital electron populations 1.21803 0.95365 1.01877 1.01194 1.21116 0.95324 0.99291 0.95244 0.92608 1.21679 0.95160 1.00249 0.97655 1.20907 0.95548 0.99236 0.93102 0.92480 1.21849 1.04175 1.00349 0.90170 1.21562 0.78207 0.85492 0.85206 1.90636 1.41977 1.26806 1.86817 1.47976 1.55092 1.25239 1.05101 1.22027 0.96002 0.84747 1.04145 1.22948 0.97415 0.95817 0.83115 1.22883 0.95817 0.96668 0.86054 1.45660 1.12623 1.70245 1.07737 1.19301 0.94943 1.37286 0.84699 0.89534 1.25731 0.94906 1.02558 1.02593 1.70016 0.99219 1.52624 1.38125 0.85018 0.76982 0.78215 0.78634 1.21195 1.19074 1.21716 1.22298 0.90921 0.98370 0.84936 1.21616 1.00612 0.99164 0.91976 1.20522 0.95085 0.95306 0.95491 1.21822 1.01083 1.00240 0.96256 1.21977 1.00838 0.96155 1.01302 1.21605 0.94464 1.00563 0.96624 0.92098 0.94186 0.92214 0.93395 0.91905 0.86463 0.86791 0.91669 0.87295 0.91684 0.88897 0.93819 0.92733 0.93997 0.94209 0.95749 0.90611 0.91078 0.92364 0.92620 0.92068 0.93499 0.92690 0.92620 0.91423 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.09 -1.74 2.45 -10.80 -0.03 -1.76 16 3 H 0.06 1.23 6.43 -2.39 -0.02 1.22 16 4 C -0.11 -2.38 4.22 30.59 0.13 -2.25 16 5 C -0.07 -1.34 1.56 -10.80 -0.02 -1.35 16 6 H 0.06 1.40 6.24 -2.39 -0.01 1.38 16 7 C -0.13 -2.34 3.73 29.85 0.11 -2.23 16 8 C 0.50 15.01 7.39 87.66 0.65 15.66 16 9 O -0.58 -22.29 13.48 -3.02 -0.04 -22.34 16 10 N -0.60 -18.64 3.12 -821.41 -2.56 -21.20 16 11 C 0.07 1.63 8.92 127.77 1.14 2.77 16 12 C 0.11 4.60 4.57 45.55 0.21 4.81 16 13 C 0.11 4.77 8.24 83.18 0.69 5.45 16 14 N -0.64 -33.87 3.76 -738.11 -2.78 -36.65 16 15 C -0.23 -13.51 10.73 84.03 0.90 -12.60 16 16 H 0.09 4.76 7.84 -2.91 -0.02 4.73 16 17 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 18 N -0.95 -58.20 11.81 21.65 0.26 -57.95 16 19 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 C 0.16 7.83 6.65 83.26 0.55 8.38 16 24 C -0.10 -1.30 4.01 30.59 0.12 -1.18 16 25 C -0.06 -0.87 0.77 -52.18 -0.04 -0.91 16 26 C -0.14 -1.45 8.47 71.98 0.61 -0.84 16 27 C -0.15 -2.28 7.78 71.98 0.56 -1.72 16 28 C -0.10 -1.37 4.01 30.59 0.12 -1.25 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.40 5.95 -2.39 -0.01 1.39 16 33 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.12 1.58 7.40 -2.39 -0.02 1.57 16 35 H 0.11 1.64 8.11 -2.38 -0.02 1.62 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.11 1.52 6.44 -2.39 -0.02 1.50 16 38 H 0.06 1.65 6.17 -2.39 -0.01 1.64 16 39 H 0.09 4.27 7.29 -2.38 -0.02 4.25 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 2.11 6.97 -2.39 -0.02 2.10 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.04 1.88 6.57 -2.39 -0.02 1.86 16 44 H 0.02 1.34 7.57 -2.39 -0.02 1.32 16 45 H 0.08 0.85 8.14 -2.38 -0.02 0.84 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.05 0.91 4.81 -2.39 -0.01 0.90 16 51 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 53 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 54 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.94 399.48 4.59 -67.35 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.85 Total: 16.76 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.84 Total: 5.76 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.08 Total: -115.79 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.34 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.94 4.59 -67.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044059540.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.682 kcal (2) G-P(sol) polarization free energy of solvation -71.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds