Wall clock time and date at job start Tue Mar 31 2020 15:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47030 * 2 1 4 4 C 1.53001 * 109.47001 * 240.00324 * 2 1 3 5 5 C 1.52997 * 109.47025 * 180.02562 * 4 2 1 6 6 C 1.50704 * 109.46818 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00125 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99710 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99856 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46418 * 59.99363 * 9 8 6 11 11 C 1.53041 * 109.46075 * 300.02222 * 9 8 6 12 12 C 1.53167 * 109.32791 * 301.36202 * 11 9 8 13 13 N 1.46923 * 108.76560 * 305.35197 * 12 11 9 14 14 C 1.36934 * 120.63221 * 233.58720 * 13 12 11 15 15 H 1.07997 * 119.99824 * 27.69276 * 14 13 12 16 16 C 1.38811 * 120.00018 * 207.69401 * 14 13 12 17 17 N 1.31618 * 120.00474 * 17.36375 * 16 14 13 18 18 Si 1.86807 * 119.99751 * 197.36448 * 16 14 13 19 19 H 1.48496 * 109.47151 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46831 * 120.00186 * 18 16 14 21 21 H 1.48499 * 109.47304 * 239.99691 * 18 16 14 22 22 C 1.46928 * 118.73858 * 53.61108 * 13 12 11 23 23 C 1.53040 * 109.45940 * 179.97438 * 9 8 6 24 24 C 1.52996 * 109.47429 * 59.99956 * 5 4 2 25 25 C 1.53001 * 109.47053 * 300.00026 * 24 5 4 26 26 H 1.08998 * 109.47147 * 179.97438 * 25 24 5 27 27 C 1.53005 * 109.46978 * 299.99863 * 25 24 5 28 28 C 1.52993 * 109.47060 * 120.00340 * 2 1 3 29 29 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46522 * 299.99992 * 1 2 3 31 31 H 1.08998 * 109.46866 * 59.99475 * 1 2 3 32 32 H 1.09005 * 109.46733 * 300.00159 * 4 2 1 33 33 H 1.08994 * 109.47199 * 59.99623 * 4 2 1 34 34 H 1.08993 * 109.47203 * 299.99840 * 5 4 2 35 35 H 0.96998 * 120.00262 * 359.97438 * 8 6 5 36 36 H 1.09011 * 109.46462 * 60.00067 * 10 9 8 37 37 H 1.08995 * 109.47306 * 179.97438 * 10 9 8 38 38 H 1.08993 * 109.47299 * 300.00745 * 10 9 8 39 39 H 1.09006 * 109.49833 * 61.29824 * 11 9 8 40 40 H 1.09003 * 109.50221 * 181.39099 * 11 9 8 41 41 H 1.09001 * 109.58872 * 185.56872 * 12 11 9 42 42 H 1.08997 * 109.70712 * 65.20719 * 12 11 9 43 43 H 0.96997 * 120.00098 * 179.97438 * 17 16 14 44 44 H 1.09007 * 109.58447 * 186.60513 * 22 13 12 45 45 H 1.09001 * 109.58614 * 66.17852 * 22 13 12 46 46 H 1.09007 * 109.49551 * 178.60506 * 23 9 8 47 47 H 1.08998 * 109.50080 * 298.67079 * 23 9 8 48 48 H 1.09005 * 109.47022 * 59.99447 * 24 5 4 49 49 H 1.08992 * 109.47610 * 179.97438 * 24 5 4 50 50 H 1.08994 * 109.46935 * 60.00108 * 27 25 24 51 51 H 1.09000 * 109.46750 * 180.02562 * 27 25 24 52 52 H 1.08992 * 109.46946 * 299.99688 * 27 25 24 53 53 H 1.09003 * 109.46964 * 299.99748 * 28 2 1 54 54 H 1.09001 * 109.47476 * 59.99933 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0723 -1.4327 -2.4792 7 8 3.2842 -1.8939 -3.2773 8 7 5.3974 -1.5568 -2.6919 9 6 5.8857 -2.2474 -3.8881 10 6 5.3766 -1.5252 -5.1372 11 6 5.3738 -3.6896 -3.8889 12 6 5.8563 -4.3995 -2.6203 13 7 7.3182 -4.2785 -2.5380 14 6 8.1030 -5.3905 -2.3882 15 1 7.7635 -6.3453 -2.7615 16 6 9.3351 -5.2906 -1.7566 17 7 9.6085 -4.2421 -1.0093 18 14 10.6051 -6.6442 -1.9671 19 1 10.0566 -7.7047 -2.8501 20 1 11.8346 -6.0786 -2.5785 21 1 10.9341 -7.2250 -0.6406 22 6 7.9220 -2.9414 -2.6188 23 6 7.4161 -2.2479 -3.8875 24 6 4.0796 -1.4434 0.0002 25 6 3.5696 -0.7222 1.2495 26 1 3.9322 -1.2366 2.1394 27 6 4.0801 0.7201 1.2498 28 6 2.0400 -0.7213 1.2491 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.9337 0.3057 -1.2487 35 1 6.0277 -1.1883 -2.0534 36 1 5.7408 -0.4978 -5.1366 37 1 5.7402 -2.0387 -6.0273 38 1 4.2866 -1.5243 -5.1375 39 1 4.2840 -3.6889 -3.9128 40 1 5.7569 -4.2113 -4.7659 41 1 5.5786 -5.4527 -2.6628 42 1 5.4014 -3.9367 -1.7445 43 1 10.4693 -4.1725 -0.5677 44 1 9.0075 -3.0326 -2.6604 45 1 7.6355 -2.3576 -1.7441 46 1 7.7800 -2.7832 -4.7646 47 1 7.7803 -1.2208 -3.9110 48 1 3.7158 -2.4710 -0.0001 49 1 5.1695 -1.4442 0.0002 50 1 3.7171 1.2342 0.3599 51 1 3.7172 1.2338 2.1401 52 1 5.1700 0.7197 1.2501 53 1 1.6767 -0.2075 2.1392 54 1 1.6767 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045647942.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:16 Heat of formation + Delta-G solvation = -65.347976 kcal Electronic energy + Delta-G solvation = -30074.916903 eV Core-core repulsion = 26430.947709 eV Total energy + Delta-G solvation = -3643.969194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.73843 -40.10630 -38.53077 -36.08112 -34.26383 -33.62275 -33.00577 -31.79988 -31.46722 -29.07555 -27.64691 -27.26891 -25.95404 -24.81313 -23.93478 -22.62714 -22.20535 -21.24582 -20.07964 -19.58950 -18.78524 -18.00714 -16.85361 -16.45933 -16.33680 -15.97031 -15.68392 -15.50005 -15.21380 -15.13726 -14.85338 -14.71945 -14.60306 -14.37950 -14.11866 -13.98889 -13.43984 -13.30771 -13.09361 -13.07365 -12.96980 -12.84212 -12.65301 -12.62174 -12.54948 -12.46510 -12.15511 -12.08006 -11.98906 -11.93923 -11.80556 -11.75398 -11.41322 -11.29558 -11.19293 -11.12735 -10.79712 -10.54085 -10.26052 -9.86728 -8.65625 -7.87588 -5.31082 1.44987 1.47869 1.57669 1.78402 2.35545 2.51174 3.27023 3.60584 3.70841 3.71524 3.75390 3.88673 4.03622 4.14458 4.16609 4.20406 4.26420 4.38504 4.42578 4.47199 4.49192 4.60792 4.64319 4.74142 4.79260 4.82558 4.85491 4.86530 4.89587 4.91626 4.98802 5.00304 5.05111 5.06457 5.15519 5.18018 5.21523 5.25457 5.28663 5.29412 5.32984 5.37297 5.42240 5.49066 5.50034 5.51720 5.64155 5.66927 5.72974 5.80227 6.39393 6.74402 7.16326 7.41493 7.86362 8.38460 9.18172 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003735 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.004456 B = 7495.289739 C = 8412.796195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.085 0.915 4 C -0.086 4.086 5 C -0.097 4.097 6 C 0.515 3.485 7 O -0.573 6.573 8 N -0.708 5.708 9 C 0.186 3.814 10 C -0.149 4.149 11 C -0.130 4.130 12 C 0.155 3.845 13 N -0.605 5.605 14 C -0.265 4.265 15 H 0.058 0.942 16 C -0.043 4.043 17 N -0.927 5.927 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.292 1.292 22 C 0.181 3.819 23 C -0.132 4.132 24 C -0.100 4.100 25 C -0.087 4.087 26 H 0.069 0.931 27 C -0.149 4.149 28 C -0.107 4.107 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.008 0.992 43 H 0.250 0.750 44 H 0.056 0.944 45 H 0.008 0.992 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.051 0.949 53 H 0.077 0.923 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 13.633 1.774 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.124 4.124 5 C -0.118 4.118 6 C 0.303 3.697 7 O -0.453 6.453 8 N -0.359 5.359 9 C 0.100 3.900 10 C -0.207 4.207 11 C -0.170 4.170 12 C 0.029 3.971 13 N -0.328 5.328 14 C -0.395 4.395 15 H 0.075 0.925 16 C -0.239 4.239 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.219 1.219 22 C 0.055 3.945 23 C -0.171 4.171 24 C -0.139 4.139 25 C -0.105 4.105 26 H 0.088 0.912 27 C -0.206 4.206 28 C -0.145 4.145 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.239 0.761 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.026 0.974 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.070 0.930 53 H 0.096 0.904 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.797 13.310 1.281 19.213 hybrid contribution 1.295 -1.088 0.306 1.719 sum -12.502 12.222 1.587 17.555 Atomic orbital electron populations 1.21803 0.94559 1.01661 1.02207 1.21163 0.95920 0.99951 0.93513 0.89661 1.21324 0.92041 1.00658 0.98357 1.21362 0.97950 1.00978 0.91525 1.21080 0.81945 0.79132 0.87550 1.90580 1.56133 1.50196 1.48354 1.46159 1.07060 1.57544 1.25102 1.20144 0.93479 0.91040 0.85323 1.22098 1.02070 1.00237 0.96308 1.22219 1.00558 0.95611 0.98612 1.20806 0.84383 0.97104 0.94781 1.44246 1.00461 1.03252 1.84852 1.19470 0.99888 0.89679 1.30464 0.92467 1.25655 1.01476 0.99861 0.96873 1.70150 1.22799 1.31765 1.32610 0.85296 0.79321 0.79258 0.77076 1.19708 1.21376 1.21941 1.20574 0.97558 0.83945 0.92409 1.22328 0.93375 1.01062 1.00349 1.21483 1.00131 0.98462 0.93774 1.21054 0.95935 0.97027 0.96507 0.91217 1.21935 1.00904 0.95102 1.02664 1.21623 0.94305 1.00423 0.98133 0.93428 0.91445 0.92529 0.93451 0.92011 0.86705 0.76123 0.91713 0.91544 0.92063 0.91274 0.92323 0.94480 0.97373 0.94043 0.92556 0.97387 0.91596 0.90093 0.93688 0.92273 0.91529 0.91552 0.92951 0.90412 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.19 71.98 0.66 -1.50 16 2 C -0.09 -1.44 2.45 -10.79 -0.03 -1.47 16 3 H 0.09 1.23 6.43 -2.39 -0.02 1.21 16 4 C -0.09 -1.91 3.77 30.59 0.12 -1.79 16 5 C -0.10 -2.26 2.25 -11.54 -0.03 -2.28 16 6 C 0.52 15.56 6.57 87.66 0.58 16.14 16 7 O -0.57 -20.58 12.20 -3.02 -0.04 -20.61 16 8 N -0.71 -21.54 3.99 -422.80 -1.69 -23.23 16 9 C 0.19 6.15 0.66 3.63 0.00 6.15 16 10 C -0.15 -4.31 8.40 71.98 0.60 -3.70 16 11 C -0.13 -4.96 4.66 30.66 0.14 -4.81 16 12 C 0.15 6.88 6.25 86.35 0.54 7.42 16 13 N -0.60 -30.19 2.99 -699.17 -2.09 -32.29 16 14 C -0.26 -14.68 9.58 84.03 0.81 -13.87 16 15 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 16 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 17 N -0.93 -53.10 11.19 21.65 0.24 -52.85 16 18 Si 0.96 44.68 29.59 68.60 2.03 46.71 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 22 C 0.18 8.19 5.04 86.36 0.43 8.62 16 23 C -0.13 -4.64 4.96 30.67 0.15 -4.49 16 24 C -0.10 -2.43 4.63 30.59 0.14 -2.29 16 25 C -0.09 -1.64 3.19 -10.81 -0.03 -1.67 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 C -0.15 -2.31 8.50 71.98 0.61 -1.70 16 28 C -0.11 -1.82 4.73 30.58 0.14 -1.67 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 33 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.12 2.19 6.43 -2.39 -0.02 2.18 16 35 H 0.40 11.66 6.68 -92.71 -0.62 11.04 16 36 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.95 6.17 -2.39 -0.01 1.93 16 39 H 0.07 2.70 6.20 -2.38 -0.01 2.69 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 42 H 0.01 0.38 7.74 -2.39 -0.02 0.36 16 43 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.06 2.93 6.04 -2.38 -0.01 2.91 16 45 H 0.01 0.37 6.94 -2.39 -0.02 0.36 16 46 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.06 1.56 7.56 -2.39 -0.02 1.54 16 50 H 0.07 0.94 4.81 -2.39 -0.01 0.93 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -63.16 390.36 3.95 -59.21 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.24 Total: 27.93 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.26 Total: -4.85 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -3.54 Total: -108.37 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.04 Total: -20.61 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.16 3.95 -59.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045647942.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.143 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds