Wall clock time and date at job start Tue Mar 31 2020 15:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46826 * 2 1 4 4 C 1.53001 * 109.47105 * 119.99928 * 2 1 3 5 5 C 1.53002 * 109.47286 * 59.99826 * 4 2 1 6 6 C 1.50692 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00622 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00424 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.45233 * 299.96862 * 9 8 6 11 11 C 1.53043 * 109.46231 * 180.02562 * 9 8 6 12 12 C 1.53202 * 109.30928 * 301.34648 * 11 9 8 13 13 N 1.46924 * 108.77572 * 305.36389 * 12 11 9 14 14 C 1.36938 * 120.62765 * 233.59083 * 13 12 11 15 15 H 1.08005 * 119.99937 * 153.45961 * 14 13 12 16 16 C 1.38818 * 120.00103 * 333.44988 * 14 13 12 17 17 N 1.31615 * 119.99964 * 334.08417 * 16 14 13 18 18 Si 1.86802 * 119.99760 * 154.07463 * 16 14 13 19 19 H 1.48500 * 109.46908 * 180.02562 * 18 16 14 20 20 H 1.48492 * 109.47435 * 300.00516 * 18 16 14 21 21 H 1.48497 * 109.46663 * 60.00790 * 18 16 14 22 22 C 1.46919 * 118.73979 * 53.86230 * 13 12 11 23 23 C 1.53042 * 109.45918 * 59.93302 * 9 8 6 24 24 C 1.53006 * 109.46861 * 59.99759 * 5 4 2 25 25 C 1.53001 * 109.47367 * 300.00191 * 24 5 4 26 26 H 1.08998 * 109.47198 * 300.00002 * 25 24 5 27 27 C 1.53004 * 109.47049 * 179.97438 * 25 24 5 28 28 C 1.52995 * 109.47092 * 239.99794 * 2 1 3 29 29 H 1.09000 * 109.46916 * 300.00102 * 1 2 3 30 30 H 1.08995 * 109.47202 * 59.99844 * 1 2 3 31 31 H 1.09001 * 109.47563 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47486 * 300.00204 * 4 2 1 33 33 H 1.08998 * 109.47198 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.46960 * 300.00527 * 5 4 2 35 35 H 0.97006 * 119.99369 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.46901 * 300.03316 * 10 9 8 37 37 H 1.09003 * 109.46927 * 60.03300 * 10 9 8 38 38 H 1.08995 * 109.47522 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.50186 * 181.39754 * 11 9 8 40 40 H 1.08994 * 109.52188 * 61.30738 * 11 9 8 41 41 H 1.09004 * 109.58434 * 185.57592 * 12 11 9 42 42 H 1.08994 * 109.58710 * 65.15362 * 12 11 9 43 43 H 0.97005 * 120.00019 * 354.36787 * 17 16 14 44 44 H 1.08999 * 109.59099 * 65.92572 * 22 13 12 45 45 H 1.09004 * 109.58712 * 186.35318 * 22 13 12 46 46 H 1.08999 * 109.49939 * 178.60215 * 23 9 8 47 47 H 1.08998 * 109.50005 * 298.67628 * 23 9 8 48 48 H 1.08998 * 109.46963 * 60.00337 * 24 5 4 49 49 H 1.09001 * 109.46780 * 179.97438 * 24 5 4 50 50 H 1.08998 * 109.47278 * 300.00143 * 27 25 24 51 51 H 1.09001 * 109.46783 * 59.99933 * 27 25 24 52 52 H 1.08995 * 109.46815 * 180.02562 * 27 25 24 53 53 H 1.09007 * 109.47194 * 60.00110 * 28 2 1 54 54 H 1.08998 * 109.47133 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 2.0328 -2.8743 2.4794 7 8 2.7300 -2.2849 3.2778 8 7 1.7068 -4.1646 2.6930 9 6 2.1952 -4.8552 3.8891 10 6 3.7252 -4.8561 3.8879 11 6 1.6850 -6.2980 3.8888 12 6 0.1533 -6.2938 3.8548 13 7 -0.3422 -5.4787 4.9722 14 6 -1.2504 -5.9906 5.8602 15 1 -1.2951 -5.6065 6.8686 16 6 -2.1135 -7.0031 5.4641 17 7 -2.4391 -7.1314 4.1953 18 14 -2.8127 -8.1835 6.7319 19 1 -3.7002 -9.1650 6.0579 20 1 -1.7013 -8.9023 7.4050 21 1 -3.5922 -7.4217 7.7405 22 6 0.1504 -4.1020 5.1154 23 6 1.6868 -4.1322 5.1385 24 6 2.0399 -2.8850 0.0000 25 6 1.5299 -2.1638 -1.2492 26 1 0.4400 -2.1638 -1.2492 27 6 2.0405 -2.8847 -2.4985 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7216 1.2490 34 1 0.4399 -2.1637 1.2493 35 1 1.1488 -4.6359 2.0546 36 1 4.0875 -5.3699 2.9975 37 1 4.0891 -3.8286 3.8879 38 1 4.0889 -5.3702 4.7775 39 1 2.0274 -6.8052 4.7908 40 1 2.0669 -6.8192 3.0111 41 1 -0.2172 -7.3141 3.9542 42 1 -0.1900 -5.8684 2.9118 43 1 -2.1426 -6.4713 3.5493 44 1 -0.1931 -3.5014 4.2731 45 1 -0.2220 -3.6756 6.0468 46 1 2.0291 -4.6598 6.0287 47 1 2.0704 -3.1120 5.1500 48 1 3.1299 -2.8850 0.0000 49 1 1.6770 -3.9128 0.0003 50 1 3.1305 -2.8844 -2.4983 51 1 1.6775 -3.9125 -2.4986 52 1 1.6775 -2.3706 -3.3884 53 1 1.6766 -0.2074 -2.1392 54 1 3.1300 -0.7217 -1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045647943.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:20 Heat of formation + Delta-G solvation = -68.279787 kcal Electronic energy + Delta-G solvation = -29977.993835 eV Core-core repulsion = 26333.897508 eV Total energy + Delta-G solvation = -3644.096327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.80851 -40.20109 -38.66136 -36.34189 -34.14030 -33.86645 -33.04967 -31.90216 -31.44152 -28.96270 -27.68190 -27.27411 -25.89409 -24.84287 -24.08567 -22.80453 -22.21870 -21.20407 -20.22106 -19.59751 -19.33525 -18.19298 -16.76475 -16.38097 -16.26389 -16.07139 -15.78603 -15.49117 -15.39492 -15.26638 -15.15431 -14.84077 -14.55275 -14.37699 -14.23282 -13.84609 -13.57246 -13.49412 -13.33420 -13.10819 -12.99846 -12.86332 -12.66232 -12.52436 -12.46334 -12.35621 -12.16278 -12.08732 -11.97919 -11.91732 -11.83766 -11.75946 -11.52739 -11.31474 -11.22462 -11.13889 -10.82073 -10.45735 -10.32994 -9.95656 -8.92455 -8.25427 -5.38007 1.58925 1.65168 1.72697 1.84699 2.26534 2.65104 3.20424 3.50218 3.57286 3.66677 3.73028 3.78930 3.92644 4.04753 4.14399 4.18231 4.22198 4.32706 4.33913 4.39483 4.44364 4.48068 4.56171 4.57982 4.70417 4.76903 4.79055 4.80251 4.81729 4.83514 4.87865 4.97152 5.02135 5.04394 5.05128 5.12279 5.13494 5.15738 5.18982 5.19970 5.25513 5.28066 5.30735 5.38990 5.40527 5.47857 5.48554 5.62720 5.69632 5.83013 6.40083 6.66090 7.05563 7.34312 7.77997 8.21686 8.99743 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.003487 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.377871 B = 8027.061436 C = 8457.107920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.087 4.087 5 C -0.102 4.102 6 C 0.516 3.484 7 O -0.572 6.572 8 N -0.709 5.709 9 C 0.187 3.813 10 C -0.149 4.149 11 C -0.126 4.126 12 C 0.159 3.841 13 N -0.612 5.612 14 C -0.360 4.360 15 H 0.043 0.957 16 C -0.068 4.068 17 N -0.936 5.936 18 Si 1.111 2.889 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.156 3.844 23 C -0.130 4.130 24 C -0.098 4.098 25 C -0.090 4.090 26 H 0.075 0.925 27 C -0.145 4.145 28 C -0.105 4.105 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.015 0.985 43 H 0.255 0.745 44 H 0.009 0.991 45 H 0.035 0.965 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.055 0.945 51 H 0.054 0.946 52 H 0.063 0.937 53 H 0.075 0.925 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 9.835 -13.551 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.125 4.125 5 C -0.123 4.123 6 C 0.304 3.696 7 O -0.451 6.451 8 N -0.360 5.360 9 C 0.101 3.899 10 C -0.207 4.207 11 C -0.166 4.166 12 C 0.033 3.967 13 N -0.337 5.337 14 C -0.490 4.490 15 H 0.061 0.939 16 C -0.265 4.265 17 N -0.578 5.578 18 Si 0.936 3.064 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.031 3.969 23 C -0.170 4.170 24 C -0.136 4.136 25 C -0.109 4.109 26 H 0.093 0.907 27 C -0.202 4.202 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.239 0.761 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.027 0.973 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.082 0.918 53 H 0.093 0.907 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.669 8.889 -12.750 18.853 hybrid contribution 0.308 1.225 0.024 1.264 sum 10.977 10.115 -12.726 19.615 Atomic orbital electron populations 1.21960 0.95190 1.01994 1.01834 1.21104 0.95972 0.99370 0.94104 0.90329 1.21289 1.00455 0.92736 0.97996 1.21381 1.02033 0.96443 0.92478 1.21072 0.79336 0.81485 0.87673 1.90587 1.39677 1.66620 1.48266 1.46149 1.53013 1.12166 1.24662 1.20123 0.93963 0.91354 0.84422 1.22088 0.93446 1.02738 1.02387 1.22229 0.96787 0.94784 1.02768 1.20810 0.91810 0.95223 0.88848 1.44306 1.48560 1.09101 1.31732 1.20200 1.14153 1.22254 0.92376 0.93898 1.27043 0.95605 1.02656 1.01212 1.70911 1.44013 1.39272 1.03574 0.82898 0.75795 0.74795 0.72910 1.21499 1.20695 1.20686 1.20899 0.92968 0.85783 0.97259 1.22299 0.96230 1.00979 0.97456 1.21550 1.00958 0.98809 0.92247 1.21155 1.00775 0.94987 0.93934 0.90672 1.21800 1.01234 1.00263 0.96908 1.21619 1.00605 0.94738 0.97310 0.93496 0.91497 0.92517 0.93211 0.92198 0.88557 0.76140 0.91551 0.92021 0.91532 0.91428 0.89598 0.93294 0.96764 0.93495 0.97331 0.94618 0.92393 0.91094 0.91733 0.91230 0.92591 0.92663 0.91789 0.90651 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.50 71.98 0.61 -1.94 16 2 C -0.09 -1.45 3.19 -10.79 -0.03 -1.49 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.09 -1.92 4.02 30.60 0.12 -1.80 16 5 C -0.10 -2.34 2.25 -11.54 -0.03 -2.37 16 6 C 0.52 15.35 6.57 87.65 0.58 15.92 16 7 O -0.57 -20.35 12.20 -3.05 -0.04 -20.39 16 8 N -0.71 -20.99 3.98 -422.81 -1.68 -22.68 16 9 C 0.19 6.09 0.66 3.63 0.00 6.10 16 10 C -0.15 -4.23 8.40 71.98 0.60 -3.63 16 11 C -0.13 -4.37 4.96 30.68 0.15 -4.22 16 12 C 0.16 7.05 4.42 86.37 0.38 7.43 16 13 N -0.61 -30.65 2.86 -698.14 -2.00 -32.64 16 14 C -0.36 -20.36 9.49 84.03 0.80 -19.56 16 15 H 0.04 2.48 7.95 -2.91 -0.02 2.46 16 16 C -0.07 -3.84 4.67 84.86 0.40 -3.44 16 17 N -0.94 -55.49 12.38 21.65 0.27 -55.22 16 18 Si 1.11 50.70 29.99 68.60 2.06 52.76 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 C 0.16 6.99 6.28 86.53 0.54 7.53 16 23 C -0.13 -4.94 4.69 30.84 0.14 -4.80 16 24 C -0.10 -1.79 4.38 30.60 0.13 -1.66 16 25 C -0.09 -1.35 2.45 -10.79 -0.03 -1.38 16 26 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 27 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 28 C -0.11 -1.49 4.73 30.59 0.14 -1.35 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.00 4.81 -2.39 -0.01 0.99 16 32 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 34 H 0.10 2.25 6.43 -2.38 -0.02 2.23 16 35 H 0.40 11.13 6.68 -92.70 -0.62 10.51 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.95 6.17 -2.39 -0.01 1.93 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.05 2.50 6.24 -2.39 -0.01 2.49 16 42 H 0.01 0.63 6.68 -2.39 -0.02 0.61 16 43 H 0.26 15.29 6.74 -92.70 -0.62 14.67 16 44 H 0.01 0.40 7.74 -2.39 -0.02 0.38 16 45 H 0.04 1.66 7.93 -2.38 -0.02 1.64 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.07 2.76 6.20 -2.39 -0.01 2.75 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.07 1.24 7.56 -2.39 -0.02 1.22 16 50 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 54 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.46 389.33 4.18 -61.28 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.38 Total: 28.76 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 5.19 Total: -11.87 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -3.41 Total: -110.54 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.04 Total: -20.39 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.06 Total: 52.76 kcal Total: -65.46 4.18 -61.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045647943.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.999 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds