Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.70125 * 2 1 4 4 C 1.53194 * 109.58410 * 120.35000 * 2 1 3 5 5 C 1.53042 * 109.30994 * 174.42804 * 4 2 1 6 6 C 1.53040 * 109.53474 * 298.63304 * 5 4 2 7 7 H 1.09008 * 109.49629 * 181.34959 * 6 5 4 8 8 N 1.46501 * 109.49925 * 301.41342 * 6 5 4 9 9 C 1.34772 * 120.00271 * 204.99885 * 8 6 5 10 10 O 1.21289 * 119.99915 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00299 * 180.02562 * 9 8 6 12 12 C 1.52996 * 109.47121 * 300.00541 * 11 9 8 13 13 C 1.52997 * 109.47041 * 60.00111 * 11 9 8 14 14 C 1.53000 * 109.47642 * 179.97438 * 11 9 8 15 15 C 1.54884 * 110.75669 * 291.56288 * 14 11 9 16 16 C 1.54271 * 104.19699 * 203.73951 * 15 14 11 17 17 C 1.53873 * 106.59385 * 23.60586 * 16 15 14 18 18 C 1.54269 * 106.60228 * 0.02562 * 17 16 15 19 19 C 1.52762 * 109.38350 * 61.24226 * 6 5 4 20 20 N 1.46922 * 109.58796 * 239.64302 * 2 1 3 21 21 C 1.36936 * 120.63123 * 6.57893 * 20 2 1 22 22 H 1.07999 * 119.99643 * 327.22118 * 21 20 2 23 23 C 1.38812 * 119.99919 * 147.22425 * 21 20 2 24 24 N 1.31621 * 119.99827 * 348.65289 * 23 21 20 25 25 Si 1.86800 * 120.00108 * 168.65486 * 23 21 20 26 26 H 1.48499 * 109.47065 * 89.99768 * 25 23 21 27 27 H 1.48497 * 109.47368 * 210.00058 * 25 23 21 28 28 H 1.48503 * 109.46930 * 329.99717 * 25 23 21 29 29 H 1.08992 * 109.46968 * 180.35564 * 1 2 3 30 30 H 1.08995 * 109.47464 * 300.35908 * 1 2 3 31 31 H 1.08999 * 109.46773 * 60.35761 * 1 2 3 32 32 H 1.08999 * 109.49618 * 294.37067 * 4 2 1 33 33 H 1.08994 * 109.50010 * 54.47393 * 4 2 1 34 34 H 1.08995 * 109.46155 * 58.65169 * 5 4 2 35 35 H 1.08998 * 109.45992 * 178.62925 * 5 4 2 36 36 H 0.97005 * 119.99874 * 25.00597 * 8 6 5 37 37 H 1.08997 * 109.47829 * 59.99259 * 12 11 9 38 38 H 1.08997 * 109.47388 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.46747 * 299.99465 * 12 11 9 40 40 H 1.09001 * 109.47280 * 52.79851 * 13 11 9 41 41 H 1.09005 * 109.47403 * 172.80152 * 13 11 9 42 42 H 1.09001 * 109.47444 * 292.79977 * 13 11 9 43 43 H 1.09008 * 110.66828 * 54.98953 * 14 11 9 44 44 H 1.09004 * 110.48640 * 322.41582 * 15 14 11 45 45 H 1.08998 * 110.48929 * 85.05931 * 15 14 11 46 46 H 1.08996 * 110.02988 * 264.32695 * 16 15 14 47 47 H 1.08997 * 110.03316 * 142.88979 * 16 15 14 48 48 H 1.09001 * 110.03041 * 240.71803 * 17 16 15 49 49 H 1.08999 * 110.03257 * 119.29089 * 17 16 15 50 50 H 1.08997 * 110.48392 * 217.70988 * 18 17 16 51 51 H 1.08998 * 110.48609 * 95.06760 * 18 17 16 52 52 H 1.09003 * 109.50739 * 185.70045 * 19 6 5 53 53 H 1.09000 * 109.43068 * 65.42743 * 19 6 5 54 54 H 0.97002 * 119.99827 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1703 6 6 3.9569 -1.6656 -0.0632 7 1 5.0413 -1.7699 -0.1031 8 7 3.3406 -2.9923 0.0151 9 6 3.8971 -4.0334 -0.6351 10 8 4.9085 -3.8720 -1.2849 11 6 3.2629 -5.3981 -0.5550 12 6 3.2184 -5.8549 0.9045 13 6 1.8395 -5.3324 -1.1124 14 6 4.0862 -6.3923 -1.3764 15 6 3.9766 -6.0781 -2.8890 16 6 4.2956 -7.4208 -3.5784 17 6 3.9828 -8.5258 -2.5543 18 6 3.4840 -7.8161 -1.2786 19 6 3.4644 -0.9519 -1.3209 20 7 2.0226 -0.6996 -1.1944 21 6 1.1537 -1.1136 -2.1685 22 1 0.1546 -1.4264 -1.9033 23 6 1.5571 -1.1313 -3.4965 24 7 2.6822 -0.5470 -3.8504 25 14 0.5033 -1.9843 -4.7815 26 1 -0.4681 -1.0146 -5.3482 27 1 1.3720 -2.5065 -5.8669 28 1 -0.2316 -3.1102 -4.1510 29 1 -0.3633 -1.0276 0.0064 30 1 -0.3634 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 1.7660 -0.1666 2.1368 33 1 1.6030 -1.7252 1.2915 34 1 4.0060 0.1475 1.0994 35 1 3.9377 -1.3447 2.0670 36 1 2.5319 -3.1215 0.5350 37 1 2.6317 -5.1466 1.4893 38 1 2.7601 -6.8421 0.9624 39 1 4.2325 -5.9017 1.3015 40 1 1.8589 -4.8866 -2.1069 41 1 1.4264 -6.3393 -1.1735 42 1 1.2191 -4.7245 -0.4538 43 1 5.1272 -6.3896 -1.0529 44 1 2.9670 -5.7515 -3.1387 45 1 4.7055 -5.3198 -3.1750 46 1 5.3489 -7.4567 -3.8564 47 1 3.6710 -7.5440 -4.4632 48 1 4.8844 -9.0980 -2.3354 49 1 3.2065 -9.1854 -2.9421 50 1 3.8538 -8.3261 -0.3891 51 1 2.3950 -7.7706 -1.2685 52 1 3.6505 -1.5798 -2.1922 53 1 3.9929 -0.0049 -1.4309 54 1 2.9639 -0.5590 -4.7785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071574251.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = -59.824659 kcal Electronic energy + Delta-G solvation = -30798.946177 eV Core-core repulsion = 27155.216492 eV Total energy + Delta-G solvation = -3643.729685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.57098 -39.85090 -38.49987 -35.77083 -35.31518 -34.41846 -31.95241 -31.69474 -29.74968 -28.55252 -28.09687 -27.82038 -26.74776 -24.67919 -23.85382 -22.29718 -21.76424 -21.07273 -20.32301 -19.62169 -18.19006 -17.89259 -17.07636 -16.94230 -16.41756 -16.04954 -15.84838 -15.61450 -15.44481 -15.01531 -14.85257 -14.64959 -14.43477 -14.36541 -13.99951 -13.73823 -13.59669 -13.11413 -12.99410 -12.92303 -12.84835 -12.72255 -12.61743 -12.52216 -12.43391 -12.33254 -12.14021 -12.08461 -11.97603 -11.86494 -11.77506 -11.56543 -11.39738 -11.24768 -11.18150 -11.12926 -11.03764 -10.55384 -10.36212 -9.82142 -8.50074 -7.80526 -5.30026 1.38533 1.40978 1.48064 1.89204 2.46304 2.50270 3.36481 3.57591 3.65200 3.67663 3.78449 3.96894 4.06170 4.11899 4.12264 4.18901 4.21175 4.39070 4.52730 4.56443 4.64618 4.67120 4.70310 4.75156 4.77488 4.83322 4.84616 4.85267 4.94636 4.95302 4.98190 5.03921 5.08303 5.11085 5.12200 5.13179 5.17751 5.20101 5.28415 5.30708 5.33903 5.38161 5.44842 5.55666 5.59202 5.61909 5.62949 5.73000 5.75526 5.83815 6.47439 6.82723 7.21233 7.53624 7.94286 8.47245 9.24484 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011564 B = 0.005704 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.811722 B = 4907.371389 C = 6225.242282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.010 0.990 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.057 0.943 8 N -0.691 5.691 9 C 0.513 3.487 10 O -0.592 6.592 11 C -0.067 4.067 12 C -0.132 4.132 13 C -0.137 4.137 14 C -0.060 4.060 15 C -0.128 4.128 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.113 4.113 19 C 0.178 3.822 20 N -0.592 5.592 21 C -0.230 4.230 22 H 0.075 0.925 23 C -0.051 4.051 24 N -0.938 5.938 25 Si 0.944 3.056 26 H -0.285 1.285 27 H -0.308 1.308 28 H -0.261 1.261 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.404 0.596 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.029 0.971 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.042 0.958 53 H -0.012 1.012 54 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -13.415 13.742 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.027 0.973 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.020 3.980 7 H 0.076 0.924 8 N -0.341 5.341 9 C 0.300 3.700 10 O -0.473 6.473 11 C -0.070 4.070 12 C -0.189 4.189 13 C -0.194 4.194 14 C -0.079 4.079 15 C -0.165 4.165 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.150 4.150 19 C 0.051 3.949 20 N -0.315 5.315 21 C -0.361 4.361 22 H 0.092 0.908 23 C -0.246 4.246 24 N -0.585 5.585 25 Si 0.773 3.227 26 H -0.212 1.212 27 H -0.235 1.235 28 H -0.186 1.186 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.241 0.759 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.104 0.896 51 H 0.100 0.900 52 H 0.060 0.940 53 H 0.006 0.994 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.437 -13.264 13.150 18.732 hybrid contribution -0.151 0.538 -1.775 1.861 sum -1.588 -12.726 11.375 17.142 Atomic orbital electron populations 1.21704 0.94571 1.01422 1.00712 1.20771 0.94224 0.93042 0.87109 0.97271 1.21945 0.94555 1.01084 0.98055 1.21648 0.97416 0.99675 0.96039 1.21349 0.96006 0.83153 0.97446 0.92444 1.45749 1.29495 1.07631 1.51246 1.21175 0.83750 0.87484 0.77568 1.90630 1.27862 1.86108 1.42703 1.20741 0.96404 0.90459 0.99410 1.21854 1.02697 1.03355 0.91010 1.21935 0.93718 1.03551 1.00210 1.21830 0.98323 0.94561 0.93223 1.22470 1.00307 0.97223 0.96516 1.22137 1.00896 0.94379 0.98791 1.22107 1.01652 0.96973 0.94794 1.22527 1.01213 0.92865 0.98385 1.20665 0.84404 0.94769 0.95090 1.44162 1.02051 1.65340 1.19994 1.19312 0.96351 1.34700 0.85712 0.90798 1.25815 0.98606 1.00864 0.99321 1.70151 1.25083 1.47463 1.15789 0.85613 0.78277 0.79115 0.79664 1.21194 1.23523 1.18561 0.92795 0.90697 0.94758 0.89246 0.91707 0.91353 0.89677 0.75866 0.91206 0.88826 0.92492 0.95193 0.88819 0.91459 0.91878 0.92805 0.95086 0.92533 0.92083 0.91040 0.90517 0.89559 0.90042 0.93966 0.99385 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.97 71.98 0.57 -3.65 16 2 C 0.15 5.79 3.50 44.98 0.16 5.95 16 3 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 4 C -0.12 -3.28 5.21 30.67 0.16 -3.12 16 5 C -0.11 -3.22 5.59 30.62 0.17 -3.05 16 6 C 0.13 4.93 2.81 44.93 0.13 5.06 16 7 H 0.06 2.40 7.58 -2.38 -0.02 2.38 16 8 N -0.69 -24.05 4.71 -442.83 -2.08 -26.14 16 9 C 0.51 19.27 6.24 87.66 0.55 19.81 16 10 O -0.59 -27.96 14.31 -3.06 -0.04 -28.00 16 11 C -0.07 -1.86 0.45 -52.93 -0.02 -1.88 16 12 C -0.13 -2.52 8.12 71.98 0.58 -1.94 16 13 C -0.14 -3.78 7.53 71.98 0.54 -3.24 16 14 C -0.06 -1.69 1.83 -9.50 -0.02 -1.70 16 15 C -0.13 -4.31 5.50 31.67 0.17 -4.14 16 16 C -0.12 -3.26 6.80 31.32 0.21 -3.05 16 17 C -0.12 -2.30 6.80 31.32 0.21 -2.08 16 18 C -0.11 -2.17 5.00 31.68 0.16 -2.01 16 19 C 0.18 8.94 4.80 86.22 0.41 9.36 16 20 N -0.59 -28.24 2.90 -676.05 -1.96 -30.20 16 21 C -0.23 -12.13 8.49 84.03 0.71 -11.41 16 22 H 0.07 3.71 6.32 -2.91 -0.02 3.69 16 23 C -0.05 -2.93 5.02 84.86 0.43 -2.51 16 24 N -0.94 -58.67 11.22 21.65 0.24 -58.43 16 25 Si 0.94 46.44 29.57 68.60 2.03 48.47 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.31 -15.89 7.11 99.48 0.71 -15.19 16 28 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.05 1.76 7.42 -2.39 -0.02 1.74 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.31 7.65 -2.39 -0.02 1.29 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.71 6.40 -2.39 -0.02 1.69 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.40 11.97 5.76 -92.70 -0.53 11.44 16 37 H 0.07 1.18 7.56 -2.39 -0.02 1.16 16 38 H 0.09 1.30 7.13 -2.39 -0.02 1.28 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.03 1.06 6.39 -2.39 -0.02 1.05 16 41 H 0.09 1.99 5.97 -2.38 -0.01 1.97 16 42 H 0.07 1.73 7.77 -2.39 -0.02 1.71 16 43 H 0.06 1.95 7.99 -2.38 -0.02 1.93 16 44 H 0.05 1.95 5.66 -2.39 -0.01 1.93 16 45 H 0.03 1.30 7.18 -2.39 -0.02 1.28 16 46 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.09 1.30 8.00 -2.39 -0.02 1.28 16 51 H 0.08 1.41 5.89 -2.39 -0.01 1.40 16 52 H 0.04 2.56 6.27 -2.39 -0.01 2.54 16 53 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 54 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -72.91 390.51 3.65 -69.26 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.33 Total: 28.64 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.13 Total: -3.61 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.80 Total: -114.76 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -72.91 3.65 -69.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071574251.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.438 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds