Wall clock time and date at job start Tue Mar 31 2020 15:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.69764 * 2 1 4 4 C 1.53185 * 109.58449 * 239.64456 * 2 1 3 5 5 C 1.53043 * 109.31069 * 185.57569 * 4 2 1 6 6 C 1.53035 * 109.54031 * 61.36799 * 5 4 2 7 7 H 1.08996 * 109.52749 * 178.66890 * 6 5 4 8 8 N 1.46501 * 109.49965 * 58.58166 * 6 5 4 9 9 C 1.34774 * 120.00068 * 155.16070 * 8 6 5 10 10 O 1.21279 * 120.00063 * 0.02562 * 9 8 6 11 11 C 1.50707 * 120.00059 * 180.02562 * 9 8 6 12 12 C 1.52995 * 109.46997 * 300.00269 * 11 9 8 13 13 C 1.52995 * 109.46869 * 60.00199 * 11 9 8 14 14 C 1.52994 * 109.47172 * 180.02562 * 11 9 8 15 15 C 1.54888 * 110.75947 * 287.56458 * 14 11 9 16 16 C 1.54261 * 104.19952 * 203.74199 * 15 14 11 17 17 C 1.53877 * 106.59665 * 23.60827 * 16 15 14 18 18 C 1.54261 * 106.59724 * 359.97438 * 17 16 15 19 19 C 1.53195 * 109.31146 * 298.63547 * 6 5 4 20 20 N 1.46925 * 109.58529 * 120.35500 * 2 1 3 21 21 C 1.36934 * 120.63418 * 353.67284 * 20 2 1 22 22 H 1.07994 * 120.00202 * 53.06101 * 21 20 2 23 23 C 1.38813 * 119.99786 * 233.06750 * 21 20 2 24 24 N 1.31628 * 119.99515 * 208.72644 * 23 21 20 25 25 Si 1.86799 * 120.00335 * 28.72057 * 23 21 20 26 26 H 1.48502 * 109.46972 * 84.48275 * 25 23 21 27 27 H 1.48500 * 109.47169 * 204.48424 * 25 23 21 28 28 H 1.48497 * 109.47227 * 324.48381 * 25 23 21 29 29 H 1.08998 * 109.47005 * 299.64177 * 1 2 3 30 30 H 1.08998 * 109.46776 * 59.64602 * 1 2 3 31 31 H 1.09008 * 109.46647 * 179.64683 * 1 2 3 32 32 H 1.09000 * 109.50152 * 65.62976 * 4 2 1 33 33 H 1.08993 * 109.50383 * 305.52698 * 4 2 1 34 34 H 1.08996 * 109.46086 * 301.34525 * 5 4 2 35 35 H 1.09004 * 109.44617 * 181.38276 * 5 4 2 36 36 H 0.97004 * 120.00066 * 335.17019 * 8 6 5 37 37 H 1.09007 * 109.47540 * 59.99929 * 12 11 9 38 38 H 1.09001 * 109.47227 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47740 * 299.99941 * 12 11 9 40 40 H 1.09004 * 109.47035 * 53.34854 * 13 11 9 41 41 H 1.09006 * 109.47237 * 173.34491 * 13 11 9 42 42 H 1.08998 * 109.47777 * 293.34819 * 13 11 9 43 43 H 1.09001 * 110.67273 * 50.99891 * 14 11 9 44 44 H 1.09000 * 110.48439 * 322.42183 * 15 14 11 45 45 H 1.09007 * 110.48697 * 85.06206 * 15 14 11 46 46 H 1.08993 * 110.03602 * 264.32338 * 16 15 14 47 47 H 1.09000 * 110.03233 * 142.89457 * 16 15 14 48 48 H 1.08996 * 110.03255 * 240.71064 * 17 16 15 49 49 H 1.09002 * 110.03135 * 119.28066 * 17 16 15 50 50 H 1.09001 * 110.48443 * 217.70755 * 18 17 16 51 51 H 1.09004 * 110.48497 * 95.06973 * 18 17 16 52 52 H 1.08999 * 109.58852 * 294.84732 * 19 6 5 53 53 H 1.08995 * 109.58890 * 174.42157 * 19 6 5 54 54 H 0.96999 * 119.99401 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9570 -1.6656 0.0634 7 1 5.0412 -1.7700 0.1039 8 7 3.3407 -2.9924 -0.0148 9 6 3.8954 -4.0327 0.6381 10 8 4.9047 -3.8705 1.2908 11 6 3.2617 -5.3977 0.5572 12 6 1.8366 -5.3318 1.1100 13 6 3.2220 -5.8558 -0.9020 14 6 4.0827 -6.3908 1.3820 15 6 5.4212 -6.7175 0.6745 16 6 5.8213 -8.0960 1.2395 17 6 4.5236 -8.7654 1.7252 18 6 3.3805 -7.7699 1.4390 19 6 3.4652 -0.9469 1.3237 20 7 2.0226 -0.6995 1.1945 21 6 1.1532 -1.1181 2.1661 22 1 0.3024 -1.7289 1.9028 23 6 1.3653 -0.7571 3.4896 24 7 0.9459 -1.5404 4.4607 25 14 2.2461 0.8402 3.8924 26 1 1.2707 1.9599 3.8807 27 1 2.8661 0.7379 5.2379 28 1 3.3016 1.0927 2.8789 29 1 -0.3633 0.5082 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0063 32 1 1.7661 -0.1668 -2.1368 33 1 1.6031 -1.7253 -1.2913 34 1 4.0061 0.1474 -1.0993 35 1 3.9376 -1.3448 -2.0670 36 1 2.5333 -3.1221 -0.5366 37 1 1.2513 -4.6241 0.5227 38 1 1.3780 -6.3189 1.0511 39 1 1.8647 -5.0054 2.1495 40 1 4.2220 -5.7897 -1.3308 41 1 2.8738 -6.8876 -0.9496 42 1 2.5422 -5.2165 -1.4653 43 1 4.2575 -6.0051 2.3864 44 1 5.2784 -6.7743 -0.4046 45 1 6.1756 -5.9704 0.9216 46 1 6.5120 -7.9717 2.0734 47 1 6.2832 -8.6999 0.4585 48 1 4.5846 -8.9659 2.7948 49 1 4.3558 -9.6941 1.1798 50 1 2.6455 -7.7914 2.2436 51 1 2.9078 -7.9964 0.4832 52 1 3.9904 0.0021 1.4317 53 1 3.6520 -1.5717 2.1971 54 1 1.0945 -1.2883 5.3855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071574259.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:23 Heat of formation + Delta-G solvation = -61.344146 kcal Electronic energy + Delta-G solvation = -30466.681002 eV Core-core repulsion = 26822.885427 eV Total energy + Delta-G solvation = -3643.795575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.59783 -39.91449 -38.54250 -35.79326 -35.31658 -34.36715 -32.53219 -31.90312 -29.80364 -28.54120 -28.02662 -27.90672 -26.58251 -24.74845 -23.94009 -22.27863 -21.77067 -21.01950 -20.48272 -19.61862 -18.36444 -17.93731 -17.04973 -16.99052 -16.52432 -16.11139 -16.01049 -15.64190 -15.42052 -15.01728 -14.96095 -14.62268 -14.51817 -14.38524 -14.20484 -13.89683 -13.66076 -13.34655 -13.16269 -12.98810 -12.89556 -12.76050 -12.72236 -12.58205 -12.50951 -12.35568 -12.16960 -11.99018 -11.84834 -11.82057 -11.73791 -11.59737 -11.40951 -11.31168 -11.24344 -11.12649 -11.08948 -10.53924 -10.42042 -9.86145 -8.33500 -8.19513 -5.67012 1.32026 1.37108 1.45948 1.84630 2.43066 2.46499 2.99810 3.45588 3.57459 3.68924 3.78798 3.94871 4.04612 4.07680 4.12855 4.15804 4.20943 4.37724 4.41960 4.59763 4.62983 4.64479 4.68113 4.75495 4.76336 4.78354 4.80012 4.84970 4.85904 4.94060 4.98403 5.02173 5.03322 5.08596 5.11838 5.13730 5.16087 5.17043 5.20180 5.26790 5.31019 5.32431 5.38968 5.44005 5.59036 5.59471 5.62267 5.67379 5.76518 5.98689 6.37351 6.77443 7.13051 7.47717 7.66564 8.24600 8.95313 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.004506 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.492552 B = 6211.768267 C = 6919.515494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.028 0.972 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.070 0.930 8 N -0.693 5.693 9 C 0.516 3.484 10 O -0.591 6.591 11 C -0.065 4.065 12 C -0.128 4.128 13 C -0.136 4.136 14 C -0.069 4.069 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.116 4.116 19 C 0.137 3.863 20 N -0.599 5.599 21 C -0.237 4.237 22 H 0.040 0.960 23 C 0.001 3.999 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.284 1.284 27 H -0.312 1.312 28 H -0.252 1.252 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.049 0.951 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.091 0.909 52 H 0.025 0.975 53 H 0.020 0.980 54 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -9.939 -16.894 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.047 3.953 3 H 0.046 0.954 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.024 3.976 7 H 0.088 0.912 8 N -0.344 5.344 9 C 0.304 3.696 10 O -0.472 6.472 11 C -0.069 4.069 12 C -0.186 4.186 13 C -0.192 4.192 14 C -0.088 4.088 15 C -0.156 4.156 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.153 4.153 19 C 0.010 3.990 20 N -0.324 5.324 21 C -0.367 4.367 22 H 0.057 0.943 23 C -0.198 4.198 24 N -0.573 5.573 25 Si 0.734 3.266 26 H -0.211 1.211 27 H -0.240 1.240 28 H -0.176 1.176 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.078 0.922 51 H 0.110 0.890 52 H 0.042 0.958 53 H 0.039 0.961 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.921 -9.820 -16.282 19.640 hybrid contribution 0.051 1.220 1.633 2.039 sum 4.972 -8.600 -14.648 17.699 Atomic orbital electron populations 1.21650 0.94923 1.01077 1.00490 1.20928 0.94052 0.93592 0.86773 0.95436 1.21942 0.94864 1.00988 0.98056 1.21661 0.97033 1.00069 0.95925 1.21344 0.96569 0.82897 0.96750 0.91212 1.45793 1.29732 1.07752 1.51119 1.21095 0.83592 0.87426 0.77521 1.90609 1.27782 1.86074 1.42705 1.20709 0.95951 0.90689 0.99503 1.21755 0.93920 1.03226 0.99681 1.21971 1.02793 1.03397 0.91081 1.21832 0.95227 0.94484 0.97237 1.22480 0.95909 0.96509 1.00657 1.22120 0.97693 0.95695 1.00443 1.22118 0.94037 0.98724 1.00980 1.22498 0.97573 0.92616 1.02637 1.21526 0.85502 0.95810 0.96114 1.44318 1.01385 1.66055 1.20691 1.18190 1.07516 1.25001 0.85977 0.94297 1.26390 0.97865 0.98958 0.96560 1.70100 1.50882 1.36639 0.99724 0.86303 0.79586 0.84274 0.76388 1.21051 1.23964 1.17618 0.94975 0.90578 0.93754 0.88996 0.92185 0.90346 0.89421 0.75836 0.92290 0.89091 0.95938 0.91704 0.89017 0.91091 0.94434 0.89674 0.94112 0.93202 0.90221 0.92626 0.89807 0.92229 0.89017 0.95756 0.96105 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 8.18 71.99 0.59 -3.61 16 2 C 0.15 5.27 3.50 44.98 0.16 5.43 16 3 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.12 -3.06 5.21 30.67 0.16 -2.90 16 5 C -0.11 -2.75 5.58 30.62 0.17 -2.58 16 6 C 0.13 4.50 2.81 45.07 0.13 4.62 16 7 H 0.07 2.50 7.58 -2.39 -0.02 2.49 16 8 N -0.69 -22.86 4.71 -442.17 -2.08 -24.94 16 9 C 0.52 18.78 6.28 87.66 0.55 19.33 16 10 O -0.59 -26.50 14.55 -3.03 -0.04 -26.54 16 11 C -0.07 -1.84 0.46 -52.93 -0.02 -1.87 16 12 C -0.13 -3.86 8.05 71.98 0.58 -3.28 16 13 C -0.14 -2.60 7.41 71.98 0.53 -2.06 16 14 C -0.07 -1.97 1.85 -9.52 -0.02 -1.98 16 15 C -0.12 -3.02 5.58 31.67 0.18 -2.85 16 16 C -0.12 -2.54 6.80 31.32 0.21 -2.33 16 17 C -0.12 -2.31 6.80 31.32 0.21 -2.09 16 18 C -0.12 -2.48 4.83 31.66 0.15 -2.33 16 19 C 0.14 6.05 4.41 86.36 0.38 6.43 16 20 N -0.60 -26.66 2.12 -675.21 -1.43 -28.09 16 21 C -0.24 -12.79 8.02 84.03 0.67 -12.12 16 22 H 0.04 2.32 7.30 -2.91 -0.02 2.30 16 23 C 0.00 0.06 5.12 84.86 0.43 0.49 16 24 N -0.93 -58.66 13.97 21.65 0.30 -58.36 16 25 Si 0.91 46.92 27.80 68.60 1.91 48.83 16 26 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.31 -16.70 7.11 99.48 0.71 -16.00 16 28 H -0.25 -12.39 5.43 99.48 0.54 -11.85 16 29 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.57 7.51 -2.38 -0.02 1.55 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.53 6.40 -2.39 -0.02 1.52 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.40 11.67 5.74 -92.71 -0.53 11.13 16 37 H 0.06 1.76 7.56 -2.38 -0.02 1.74 16 38 H 0.09 2.15 7.03 -2.39 -0.02 2.13 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 1.23 6.37 -2.38 -0.02 1.21 16 41 H 0.09 1.34 6.21 -2.38 -0.01 1.33 16 42 H 0.07 1.19 7.75 -2.39 -0.02 1.17 16 43 H 0.04 1.40 7.85 -2.39 -0.02 1.38 16 44 H 0.08 1.83 5.53 -2.39 -0.01 1.82 16 45 H 0.04 1.29 7.43 -2.38 -0.02 1.27 16 46 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.35 8.01 -2.39 -0.02 1.33 16 51 H 0.09 1.53 6.12 -2.38 -0.01 1.52 16 52 H 0.02 1.09 6.78 -2.39 -0.02 1.07 16 53 H 0.02 1.10 7.73 -2.39 -0.02 1.08 16 54 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -72.16 390.05 3.88 -68.28 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.16 Total: 24.52 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.07 Total: -3.69 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -3.21 Total: -111.39 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.91 Total: 48.83 kcal Total: -72.16 3.88 -68.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071574259.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -72.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds