Wall clock time and date at job start Tue Mar 31 2020 15:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58907 * 2 1 4 4 C 1.53190 * 109.58858 * 239.70690 * 2 1 3 5 5 C 1.53047 * 109.31201 * 185.43521 * 4 2 1 6 6 C 1.53035 * 109.53348 * 61.37023 * 5 4 2 7 7 H 1.09004 * 109.50089 * 58.58844 * 6 5 4 8 8 N 1.46500 * 109.52079 * 178.66322 * 6 5 4 9 9 C 1.34775 * 120.00299 * 204.85189 * 8 6 5 10 10 O 1.21283 * 119.99901 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00213 * 179.97438 * 9 8 6 12 12 C 1.52990 * 109.47165 * 300.00462 * 11 9 8 13 13 C 1.53001 * 109.46697 * 60.00257 * 11 9 8 14 14 C 1.53003 * 109.46966 * 180.02562 * 11 9 8 15 15 C 1.54888 * 110.75843 * 291.48377 * 14 11 9 16 16 C 1.54266 * 104.19647 * 203.74337 * 15 14 11 17 17 C 1.53871 * 106.59606 * 23.61349 * 16 15 14 18 18 C 1.54262 * 106.60237 * 359.97438 * 17 16 15 19 19 C 1.53185 * 109.31343 * 298.63240 * 6 5 4 20 20 N 1.46920 * 108.89741 * 54.56826 * 19 6 5 21 21 C 1.36932 * 120.63609 * 126.45742 * 20 19 6 22 22 H 1.07996 * 120.00598 * 212.67583 * 21 20 19 23 23 C 1.38820 * 119.99613 * 32.67388 * 21 20 19 24 24 N 1.31612 * 119.99804 * 12.48810 * 23 21 20 25 25 Si 1.86803 * 119.99773 * 192.48217 * 23 21 20 26 26 H 1.48499 * 109.46680 * 60.00453 * 25 23 21 27 27 H 1.48495 * 109.46837 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47178 * 300.00199 * 25 23 21 29 29 H 1.09001 * 109.47081 * 180.28536 * 1 2 3 30 30 H 1.08996 * 109.47642 * 300.28921 * 1 2 3 31 31 H 1.09005 * 109.46677 * 60.29356 * 1 2 3 32 32 H 1.09003 * 109.49329 * 65.48796 * 4 2 1 33 33 H 1.08994 * 109.52671 * 305.41010 * 4 2 1 34 34 H 1.08994 * 109.45756 * 301.35021 * 5 4 2 35 35 H 1.09004 * 109.45633 * 181.39139 * 5 4 2 36 36 H 0.97003 * 120.00029 * 24.86075 * 8 6 5 37 37 H 1.08996 * 109.47450 * 59.99664 * 12 11 9 38 38 H 1.08999 * 109.47118 * 180.02562 * 12 11 9 39 39 H 1.09005 * 109.47360 * 299.99623 * 12 11 9 40 40 H 1.08997 * 109.47179 * 52.67468 * 13 11 9 41 41 H 1.09004 * 109.46888 * 172.67085 * 13 11 9 42 42 H 1.08993 * 109.47164 * 292.67255 * 13 11 9 43 43 H 1.08998 * 110.67114 * 54.92171 * 14 11 9 44 44 H 1.09002 * 110.48554 * 322.42804 * 15 14 11 45 45 H 1.09000 * 110.48420 * 85.06672 * 15 14 11 46 46 H 1.08995 * 110.03210 * 264.32254 * 16 15 14 47 47 H 1.09006 * 110.03018 * 142.89318 * 16 15 14 48 48 H 1.09008 * 110.02983 * 240.71215 * 17 16 15 49 49 H 1.08997 * 110.03293 * 119.28811 * 17 16 15 50 50 H 1.08997 * 110.48803 * 217.71028 * 18 17 16 51 51 H 1.09005 * 110.48466 * 95.06769 * 18 17 16 52 52 H 1.09007 * 109.58673 * 174.42737 * 19 6 5 53 53 H 1.09004 * 109.59069 * 294.70402 * 19 6 5 54 54 H 0.97011 * 119.99874 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7280 -1.2462 5 6 3.5679 -0.8435 -1.1727 6 6 3.9603 -1.6608 0.0602 7 1 3.5036 -2.6489 0.0022 8 7 5.4179 -1.7983 0.1129 9 6 5.9736 -2.8388 0.7648 10 8 5.2669 -3.6616 1.3075 11 6 7.4730 -2.9804 0.8185 12 6 8.0254 -3.0975 -0.6034 13 6 8.0772 -1.7515 1.5008 14 6 7.8385 -4.2364 1.6122 15 6 7.4826 -4.0625 3.1095 16 6 8.4131 -5.0545 3.8373 17 6 9.6158 -5.2921 2.9073 18 6 9.3738 -4.4367 1.6466 19 6 3.4684 -0.9435 1.3212 20 7 2.0256 -0.6961 1.1957 21 6 1.1593 -1.1096 2.1722 22 1 0.1587 -1.4205 1.9102 23 6 1.5671 -1.1292 3.4990 24 7 2.6829 -0.5278 3.8534 25 14 0.5321 -2.0089 4.7813 26 1 0.4133 -3.4447 4.4213 27 1 1.1803 -1.8836 6.1114 28 1 -0.8201 -1.3973 4.8306 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8873 31 1 -0.3633 0.5093 -0.8927 32 1 1.7639 -0.1657 -2.1371 33 1 1.6050 -1.7247 -1.2925 34 1 4.0045 0.1527 -1.1020 35 1 3.9382 -1.3393 -2.0700 36 1 5.9831 -1.1403 -0.3214 37 1 7.7650 -2.2030 -1.1692 38 1 9.1098 -3.2004 -0.5646 39 1 7.5950 -3.9730 -1.0896 40 1 7.5890 -1.5929 2.4623 41 1 9.1442 -1.9104 1.6569 42 1 7.9289 -0.8756 0.8692 43 1 7.3441 -5.1132 1.1940 44 1 7.6849 -3.0416 3.4336 45 1 6.4381 -4.3197 3.2857 46 1 7.8898 -5.9933 4.0182 47 1 8.7501 -4.6264 4.7814 48 1 9.6760 -6.3464 2.6369 49 1 10.5363 -4.9795 3.4001 50 1 9.7098 -4.9669 0.7555 51 1 9.8814 -3.4760 1.7342 52 1 3.6575 -1.5682 2.1942 53 1 3.9937 0.0053 1.4303 54 1 2.9677 -0.5412 4.7806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071574261.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:27 Heat of formation + Delta-G solvation = -64.544205 kcal Electronic energy + Delta-G solvation = -29842.198019 eV Core-core repulsion = 26198.263679 eV Total energy + Delta-G solvation = -3643.934340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.58810 -39.77010 -38.62810 -35.99709 -35.34898 -34.59911 -32.04794 -31.69968 -29.75714 -28.60088 -28.11422 -27.72091 -26.76803 -24.62787 -23.90902 -22.34986 -21.46679 -21.16930 -20.90071 -19.50158 -18.33868 -17.86871 -17.29458 -17.01776 -16.44841 -16.03206 -15.93010 -15.61003 -15.44561 -15.05858 -15.02719 -14.65915 -14.44329 -14.38758 -14.13091 -13.75336 -13.52273 -13.14107 -13.05432 -12.97964 -12.76942 -12.74678 -12.71649 -12.57988 -12.36071 -12.33990 -12.15210 -12.01170 -11.96566 -11.88435 -11.79116 -11.66048 -11.45939 -11.33901 -11.26393 -11.13704 -11.13254 -10.56314 -10.43687 -9.98224 -8.58640 -7.86945 -5.36960 1.37353 1.42639 1.46694 1.79965 2.28392 2.48555 3.29569 3.52052 3.62134 3.71626 3.77794 3.92810 4.00876 4.08681 4.10185 4.17804 4.25874 4.36230 4.39543 4.55766 4.61852 4.63914 4.69706 4.70714 4.76395 4.80209 4.82609 4.84257 4.88688 4.93680 4.94755 4.99816 5.04985 5.06022 5.12010 5.16157 5.17295 5.18577 5.29323 5.30669 5.33859 5.37614 5.43661 5.52992 5.54198 5.56156 5.59957 5.61108 5.68923 5.81600 6.41378 6.72790 7.15405 7.45549 7.88436 8.39206 9.17625 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.004319 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.485435 B = 6481.969576 C = 8152.834834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.045 0.955 8 N -0.709 5.709 9 C 0.509 3.491 10 O -0.587 6.587 11 C -0.066 4.066 12 C -0.134 4.134 13 C -0.142 4.142 14 C -0.064 4.064 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.111 4.111 19 C 0.187 3.813 20 N -0.604 5.604 21 C -0.254 4.254 22 H 0.070 0.930 23 C -0.049 4.049 24 N -0.932 5.932 25 Si 0.955 3.045 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.410 0.590 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.035 0.965 53 H -0.004 1.004 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.866 -2.615 -12.062 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.063 0.937 8 N -0.360 5.360 9 C 0.297 3.703 10 O -0.466 6.466 11 C -0.069 4.069 12 C -0.191 4.191 13 C -0.199 4.199 14 C -0.083 4.083 15 C -0.165 4.165 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.148 4.148 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.245 4.245 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.191 1.191 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.105 0.895 52 H 0.053 0.947 53 H 0.014 0.986 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.394 -3.164 -11.525 19.488 hybrid contribution -0.893 -0.246 1.496 1.760 sum 14.501 -3.410 -10.028 17.957 Atomic orbital electron populations 1.21721 0.94806 1.01041 1.01030 1.20805 0.94238 0.93362 0.86722 0.96132 1.21951 0.94727 1.00747 0.98327 1.21636 0.96957 0.99947 0.95905 1.21446 0.79913 0.98653 0.97501 0.93715 1.45916 1.07142 1.27387 1.55564 1.21409 0.91877 0.80342 0.76674 1.90694 1.65339 1.44159 1.46403 1.20778 0.88655 0.97988 0.99526 1.21876 1.02932 1.02699 0.91588 1.22009 1.02429 0.95585 0.99871 1.21849 0.97280 0.95413 0.93776 1.22487 0.98126 0.99734 0.96187 1.22135 0.96607 0.98438 0.99066 1.22114 0.97528 1.00369 0.95636 1.22515 0.92845 1.01125 0.98338 1.20672 0.83732 0.94912 0.94731 1.44288 1.02549 1.65846 1.20133 1.19380 0.96645 1.36185 0.86258 0.91228 1.25869 0.98973 1.00348 0.99262 1.70137 1.25383 1.46015 1.16214 0.85522 0.79007 0.78636 0.78457 1.21363 1.22194 1.19095 0.93708 0.94398 0.90207 0.88561 0.93158 0.90872 0.89650 0.75372 0.90699 0.88599 0.93036 0.94510 0.88381 0.90653 0.92543 0.91775 0.95456 0.93076 0.91612 0.91494 0.90214 0.89850 0.89457 0.94682 0.98639 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.98 71.98 0.57 -4.18 16 2 C 0.15 6.27 3.49 44.97 0.16 6.43 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 5 C -0.11 -3.21 5.36 30.62 0.16 -3.04 16 6 C 0.13 5.25 2.60 45.07 0.12 5.37 16 7 H 0.04 2.11 7.58 -2.39 -0.02 2.09 16 8 N -0.71 -23.19 4.88 -442.17 -2.16 -25.34 16 9 C 0.51 18.28 6.25 87.66 0.55 18.83 16 10 O -0.59 -27.99 14.32 -3.04 -0.04 -28.03 16 11 C -0.07 -1.63 0.45 -52.93 -0.02 -1.66 16 12 C -0.13 -2.23 8.12 71.98 0.58 -1.64 16 13 C -0.14 -3.04 7.53 71.98 0.54 -2.50 16 14 C -0.06 -1.67 1.82 -9.51 -0.02 -1.69 16 15 C -0.13 -3.99 5.51 31.67 0.17 -3.81 16 16 C -0.12 -3.05 6.80 31.32 0.21 -2.83 16 17 C -0.12 -2.12 6.80 31.32 0.21 -1.91 16 18 C -0.11 -1.89 5.00 31.66 0.16 -1.74 16 19 C 0.19 9.59 4.82 86.36 0.42 10.01 16 20 N -0.60 -31.45 2.98 -675.15 -2.01 -33.46 16 21 C -0.25 -14.64 8.51 84.04 0.72 -13.93 16 22 H 0.07 3.88 6.33 -2.91 -0.02 3.86 16 23 C -0.05 -2.93 4.99 84.87 0.42 -2.51 16 24 N -0.93 -58.93 11.26 21.65 0.24 -58.68 16 25 Si 0.96 48.59 29.57 68.60 2.03 50.61 16 26 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 27 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 H 0.04 1.71 7.40 -2.39 -0.02 1.69 16 30 H 0.04 1.55 7.69 -2.39 -0.02 1.53 16 31 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.41 9.99 7.59 -92.71 -0.70 9.29 16 37 H 0.07 1.02 7.56 -2.39 -0.02 1.00 16 38 H 0.10 1.08 7.13 -2.39 -0.02 1.07 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.04 1.03 6.41 -2.39 -0.02 1.01 16 41 H 0.10 1.52 5.97 -2.38 -0.01 1.50 16 42 H 0.07 1.36 7.77 -2.39 -0.02 1.34 16 43 H 0.06 1.72 7.99 -2.39 -0.02 1.70 16 44 H 0.06 2.00 5.67 -2.39 -0.01 1.99 16 45 H 0.03 1.10 7.18 -2.39 -0.02 1.08 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 1.13 8.00 -2.39 -0.02 1.11 16 51 H 0.09 1.21 5.89 -2.38 -0.01 1.20 16 52 H 0.03 2.17 6.27 -2.38 -0.01 2.16 16 53 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 54 H 0.24 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -78.09 394.17 3.34 -74.75 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.16 Total: 24.57 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.12 Total: -4.41 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -3.93 Total: -117.49 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.04 Total: -28.03 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.61 kcal Total: -78.09 3.34 -74.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071574261.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.206 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds