Wall clock time and date at job start Tue Mar 31 2020 15:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.58407 * 2 1 4 4 C 1.53187 * 109.58465 * 120.28453 * 2 1 3 5 5 C 1.53039 * 109.31185 * 174.42427 * 4 2 1 6 6 C 1.53037 * 109.53758 * 298.62917 * 5 4 2 7 7 H 1.09003 * 109.49764 * 301.38433 * 6 5 4 8 8 N 1.46499 * 109.50101 * 181.31560 * 6 5 4 9 9 C 1.34773 * 120.00203 * 155.00107 * 8 6 5 10 10 O 1.21284 * 119.99932 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00310 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47129 * 59.99760 * 11 9 8 13 13 C 1.53002 * 109.47111 * 300.00118 * 11 9 8 14 14 C 1.52999 * 109.47259 * 180.02562 * 11 9 8 15 15 C 1.54889 * 110.75525 * 288.44287 * 14 11 9 16 16 C 1.54266 * 104.19622 * 203.74531 * 15 14 11 17 17 C 1.53871 * 106.59835 * 23.60938 * 16 15 14 18 18 C 1.54266 * 106.60092 * 0.02562 * 17 16 15 19 19 C 1.53195 * 109.31279 * 61.36562 * 6 5 4 20 20 N 1.46924 * 109.58576 * 239.57171 * 2 1 3 21 21 C 1.36934 * 120.63295 * 6.62319 * 20 2 1 22 22 H 1.08002 * 120.00251 * 328.88115 * 21 20 2 23 23 C 1.38813 * 120.00313 * 148.87321 * 21 20 2 24 24 N 1.31625 * 119.99874 * 348.13777 * 23 21 20 25 25 Si 1.86793 * 120.00281 * 168.13565 * 23 21 20 26 26 H 1.48495 * 109.47452 * 60.00187 * 25 23 21 27 27 H 1.48505 * 109.47145 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47152 * 300.00032 * 25 23 21 29 29 H 1.09002 * 109.46957 * 299.72006 * 1 2 3 30 30 H 1.08997 * 109.47041 * 59.72050 * 1 2 3 31 31 H 1.09001 * 109.46730 * 179.71895 * 1 2 3 32 32 H 1.08994 * 109.50138 * 54.46556 * 4 2 1 33 33 H 1.09001 * 109.52209 * 294.38639 * 4 2 1 34 34 H 1.09001 * 109.46208 * 178.60982 * 5 4 2 35 35 H 1.09002 * 109.45450 * 58.64105 * 5 4 2 36 36 H 0.96999 * 119.99748 * 335.00567 * 8 6 5 37 37 H 1.08997 * 109.47099 * 293.06571 * 12 11 9 38 38 H 1.08999 * 109.46979 * 173.05978 * 12 11 9 39 39 H 1.08998 * 109.46679 * 53.06520 * 12 11 9 40 40 H 1.08999 * 109.47387 * 180.02562 * 13 11 9 41 41 H 1.09001 * 109.46985 * 300.00018 * 13 11 9 42 42 H 1.08995 * 109.47042 * 59.99790 * 13 11 9 43 43 H 1.09004 * 110.67227 * 51.88039 * 14 11 9 44 44 H 1.09001 * 110.48627 * 322.42056 * 15 14 11 45 45 H 1.09002 * 110.48790 * 85.06605 * 15 14 11 46 46 H 1.09009 * 110.03190 * 264.32846 * 16 15 14 47 47 H 1.09000 * 110.03635 * 142.89873 * 16 15 14 48 48 H 1.09009 * 110.03511 * 240.71723 * 17 16 15 49 49 H 1.09002 * 110.03306 * 119.28876 * 17 16 15 50 50 H 1.09002 * 110.48758 * 217.71289 * 18 17 16 51 51 H 1.08997 * 110.48187 * 95.06687 * 18 17 16 52 52 H 1.09004 * 109.58524 * 65.15359 * 19 6 5 53 53 H 1.09000 * 109.59240 * 185.57790 * 19 6 5 54 54 H 0.96996 * 120.00010 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5675 -0.8465 1.1712 6 6 3.9569 -1.6658 -0.0613 7 1 3.4987 -2.6531 -0.0015 8 7 5.4142 -1.8055 -0.1152 9 6 5.9676 -2.8491 -0.7640 10 8 5.2592 -3.6725 -1.3036 11 6 7.4667 -2.9932 -0.8189 12 6 8.0207 -3.1059 0.6028 13 6 8.0720 -1.7676 -1.5064 14 6 7.8295 -4.2518 -1.6096 15 6 7.4864 -5.5267 -0.7996 16 6 8.4156 -6.6092 -1.3865 17 6 9.6093 -5.8699 -2.0158 18 6 9.3642 -4.3638 -1.7889 19 6 3.4651 -0.9487 -1.3225 20 7 2.0226 -0.7011 -1.1936 21 6 1.1538 -1.1155 -2.1675 22 1 0.1458 -1.4019 -1.9058 23 6 1.5684 -1.1674 -3.4912 24 7 2.7038 -0.6050 -3.8477 25 14 0.5152 -2.0354 -4.7666 26 1 -0.8179 -1.3847 -4.8337 27 1 1.1752 -1.9507 -6.0943 28 1 0.3514 -3.4613 -4.3859 29 1 -0.3633 0.5095 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0277 -0.0050 32 1 1.6029 -1.7236 1.2935 33 1 1.7660 -0.1646 2.1373 34 1 3.9378 -1.3421 2.0686 35 1 4.0060 0.1488 1.0989 36 1 5.9808 -1.1469 0.3161 37 1 7.8708 -2.1621 1.1271 38 1 9.0860 -3.3330 0.5607 39 1 7.5000 -3.9030 1.1334 40 1 9.1562 -1.8719 -1.5466 41 1 7.6773 -1.6872 -2.5192 42 1 7.8135 -0.8707 -0.9435 43 1 7.3258 -4.2576 -2.5762 44 1 7.6985 -5.3749 0.2587 45 1 6.4416 -5.8012 -0.9448 46 1 7.8871 -7.1818 -2.1488 47 1 8.7628 -7.2728 -0.5945 48 1 9.6601 -6.0835 -3.0836 49 1 10.5359 -6.1745 -1.5292 50 1 9.6894 -3.7894 -2.6563 51 1 9.8797 -4.0246 -0.8904 52 1 3.9904 0.0001 -1.4317 53 1 3.6518 -1.5746 -2.1952 54 1 2.9938 -0.6416 -4.7726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071574263.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:31 Heat of formation + Delta-G solvation = -63.875543 kcal Electronic energy + Delta-G solvation = -29742.975524 eV Core-core repulsion = 26099.070179 eV Total energy + Delta-G solvation = -3643.905345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.58399 -39.77572 -38.63507 -35.99663 -35.33861 -34.60645 -32.05118 -31.67889 -29.80401 -28.58800 -28.05700 -27.72511 -26.77636 -24.64259 -23.90592 -22.34551 -21.47293 -21.13699 -20.90135 -19.49126 -18.34113 -17.89501 -17.29959 -17.01135 -16.43990 -15.99512 -15.94129 -15.69284 -15.41071 -15.06707 -14.94702 -14.62633 -14.54078 -14.29672 -14.11669 -13.77702 -13.49684 -13.19080 -13.08461 -12.96000 -12.76531 -12.74984 -12.69624 -12.57611 -12.37555 -12.32426 -12.14073 -12.01807 -11.99188 -11.82770 -11.76113 -11.65777 -11.45026 -11.35366 -11.25924 -11.14423 -11.11611 -10.55676 -10.45147 -9.97897 -8.60309 -7.86123 -5.35536 1.37777 1.43177 1.47161 1.79959 2.28630 2.49022 3.30172 3.52072 3.63009 3.70867 3.79115 3.93646 4.02391 4.08954 4.10450 4.17579 4.26122 4.35870 4.40030 4.57923 4.62092 4.63312 4.70667 4.72423 4.77584 4.79623 4.80871 4.83967 4.88910 4.92879 4.96395 4.99798 5.04740 5.06067 5.12924 5.15263 5.17992 5.19116 5.28624 5.30510 5.34164 5.38659 5.42680 5.53359 5.54979 5.57950 5.60795 5.61220 5.68728 5.83208 6.41257 6.73007 7.15418 7.45657 7.89095 8.38633 9.18200 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003983 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.417089 B = 7028.421667 C = 8254.610379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.044 0.956 8 N -0.708 5.708 9 C 0.510 3.490 10 O -0.587 6.587 11 C -0.066 4.066 12 C -0.138 4.138 13 C -0.138 4.138 14 C -0.071 4.071 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.112 4.112 19 C 0.184 3.816 20 N -0.604 5.604 21 C -0.253 4.253 22 H 0.072 0.928 23 C -0.052 4.052 24 N -0.934 5.934 25 Si 0.957 3.043 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.287 1.287 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.046 0.954 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.068 0.932 51 H 0.094 0.906 52 H -0.005 1.005 53 H 0.039 0.961 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.688 -3.258 13.474 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.062 0.938 8 N -0.360 5.360 9 C 0.297 3.703 10 O -0.467 6.467 11 C -0.069 4.069 12 C -0.195 4.195 13 C -0.195 4.195 14 C -0.090 4.090 15 C -0.160 4.160 16 C -0.161 4.161 17 C -0.159 4.159 18 C -0.149 4.149 19 C 0.057 3.943 20 N -0.329 5.329 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.247 4.247 24 N -0.580 5.580 25 Si 0.786 3.214 26 H -0.191 1.191 27 H -0.222 1.222 28 H -0.213 1.213 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.087 0.913 51 H 0.113 0.887 52 H 0.013 0.987 53 H 0.058 0.942 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.213 -3.815 12.940 20.333 hybrid contribution -0.844 -0.226 -1.569 1.796 sum 14.369 -4.041 11.371 18.764 Atomic orbital electron populations 1.21731 0.94811 1.01051 1.01052 1.20801 0.94260 0.93349 0.86749 0.96048 1.21950 0.94733 1.00736 0.98328 1.21637 0.96969 0.99929 0.95911 1.21454 0.79892 0.98631 0.97523 0.93759 1.45909 1.07172 1.27121 1.55767 1.21398 0.91875 0.80320 0.76690 1.90694 1.65215 1.44171 1.46595 1.20767 0.88679 0.97763 0.99679 1.21997 1.02750 1.03045 0.91672 1.21895 1.02636 0.95535 0.99460 1.21876 0.97119 0.92778 0.97195 1.22497 0.98297 0.94902 1.00298 1.22130 0.96309 0.97667 1.00024 1.22126 0.98294 0.94888 1.00594 1.22509 0.93064 0.96504 1.02861 1.20729 0.83632 0.95038 0.94932 1.44307 1.02596 1.65550 1.20396 1.19431 0.95953 1.36439 0.86502 0.91011 1.25852 0.98882 1.00768 0.99197 1.70137 1.24181 1.47382 1.16325 0.85493 0.78935 0.78629 0.78392 1.19115 1.22245 1.21332 0.90202 0.94366 0.93701 0.93192 0.88566 0.89676 0.90866 0.75371 0.90407 0.88613 0.92560 0.88333 0.94913 0.91010 0.94241 0.89829 0.94899 0.93526 0.90457 0.92480 0.89754 0.91323 0.88737 0.98657 0.94203 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.96 71.98 0.57 -4.18 16 2 C 0.15 6.25 3.50 44.97 0.16 6.40 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.76 5.37 30.67 0.16 -3.60 16 5 C -0.11 -3.21 5.35 30.62 0.16 -3.05 16 6 C 0.13 5.27 2.60 45.07 0.12 5.39 16 7 H 0.04 2.10 7.58 -2.39 -0.02 2.08 16 8 N -0.71 -23.26 4.88 -442.17 -2.16 -25.42 16 9 C 0.51 18.41 6.28 87.66 0.55 18.96 16 10 O -0.59 -28.22 14.49 -3.04 -0.04 -28.27 16 11 C -0.07 -1.64 0.46 -52.93 -0.02 -1.66 16 12 C -0.14 -2.29 7.44 71.98 0.54 -1.75 16 13 C -0.14 -3.01 8.07 71.98 0.58 -2.43 16 14 C -0.07 -1.87 1.84 -9.49 -0.02 -1.89 16 15 C -0.12 -3.21 5.57 31.67 0.18 -3.03 16 16 C -0.12 -2.60 6.80 31.32 0.21 -2.39 16 17 C -0.12 -2.11 6.80 31.32 0.21 -1.89 16 18 C -0.11 -2.01 4.86 31.68 0.15 -1.85 16 19 C 0.18 9.47 4.83 86.36 0.42 9.88 16 20 N -0.60 -31.46 2.98 -675.22 -2.02 -33.47 16 21 C -0.25 -14.55 8.56 84.03 0.72 -13.83 16 22 H 0.07 3.98 6.25 -2.91 -0.02 3.96 16 23 C -0.05 -3.11 5.02 84.86 0.43 -2.68 16 24 N -0.93 -59.21 11.10 21.65 0.24 -58.97 16 25 Si 0.96 48.61 29.57 68.60 2.03 50.64 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.55 7.68 -2.39 -0.02 1.53 16 31 H 0.04 1.70 7.39 -2.39 -0.02 1.69 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.41 10.03 7.58 -92.71 -0.70 9.32 16 37 H 0.08 1.02 7.76 -2.39 -0.02 1.00 16 38 H 0.10 1.11 6.15 -2.39 -0.01 1.09 16 39 H 0.06 1.05 6.39 -2.39 -0.02 1.03 16 40 H 0.10 1.51 7.05 -2.39 -0.02 1.50 16 41 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 1.38 7.56 -2.39 -0.02 1.36 16 43 H 0.04 1.38 7.89 -2.39 -0.02 1.36 16 44 H 0.08 1.86 5.56 -2.39 -0.01 1.85 16 45 H 0.03 1.11 7.37 -2.39 -0.02 1.10 16 46 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.19 8.01 -2.39 -0.02 1.17 16 51 H 0.09 1.23 6.08 -2.39 -0.01 1.21 16 52 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 53 H 0.04 2.48 6.12 -2.39 -0.01 2.47 16 54 H 0.24 15.22 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -78.27 394.11 3.33 -74.93 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.16 Total: 24.16 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.12 Total: -3.61 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -3.93 Total: -117.86 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.04 Total: -28.27 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.03 Total: 50.64 kcal Total: -78.27 3.33 -74.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071574263.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.058 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds