Wall clock time and date at job start Tue Mar 31 2020 15:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.59211 * 2 1 4 4 C 1.53164 * 109.59445 * 239.56050 * 2 1 3 5 5 C 1.53035 * 109.33098 * 185.57410 * 4 2 1 6 6 C 1.53042 * 109.52612 * 61.37199 * 5 4 2 7 7 H 1.09000 * 109.49394 * 178.68674 * 6 5 4 8 8 N 1.46503 * 109.49465 * 58.62837 * 6 5 4 9 9 C 1.34781 * 119.99621 * 155.82483 * 8 6 5 10 10 O 1.21279 * 120.00213 * 4.73291 * 9 8 6 11 11 C 1.50701 * 119.99561 * 184.73294 * 9 8 6 12 12 C 1.52996 * 109.62683 * 274.85794 * 11 9 8 13 13 C 1.50477 * 109.62747 * 154.27505 * 11 9 8 14 14 C 1.54069 * 112.49580 * 334.44148 * 13 11 9 15 15 C 1.54058 * 112.81958 * 318.28366 * 14 13 11 16 16 C 1.50473 * 112.49961 * 318.28541 * 15 14 13 17 17 C 1.54243 * 108.52553 * 94.14748 * 16 15 14 18 18 C 1.45545 * 112.40359 * 280.01822 * 17 16 15 19 19 C 1.53189 * 109.31479 * 298.64237 * 6 5 4 20 20 N 1.46923 * 108.77455 * 54.63496 * 19 6 5 21 21 C 1.36942 * 120.63181 * 126.37392 * 20 19 6 22 22 H 1.08001 * 119.99732 * 221.00694 * 21 20 19 23 23 C 1.38809 * 120.00075 * 41.00361 * 21 20 19 24 24 N 1.31623 * 119.99957 * 215.59382 * 23 21 20 25 25 Si 1.86794 * 120.00116 * 35.58730 * 23 21 20 26 26 H 1.48506 * 109.47121 * 84.62101 * 25 23 21 27 27 H 1.48503 * 109.47532 * 204.62539 * 25 23 21 28 28 H 1.48501 * 109.47326 * 324.62503 * 25 23 21 29 29 H 1.09001 * 109.46994 * 299.71905 * 1 2 3 30 30 H 1.09002 * 109.46331 * 59.72109 * 1 2 3 31 31 H 1.08993 * 109.46958 * 179.71875 * 1 2 3 32 32 H 1.08998 * 109.47548 * 65.62158 * 4 2 1 33 33 H 1.09002 * 109.49843 * 305.54180 * 4 2 1 34 34 H 1.08998 * 109.45977 * 301.35962 * 5 4 2 35 35 H 1.09001 * 109.46162 * 181.38243 * 5 4 2 36 36 H 0.96991 * 120.00223 * 335.81797 * 8 6 5 37 37 H 1.09001 * 109.47235 * 60.00430 * 12 11 9 38 38 H 1.09008 * 109.47103 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47238 * 299.99895 * 12 11 9 40 40 H 1.08996 * 108.87610 * 95.21571 * 13 11 9 41 41 H 1.08995 * 108.87666 * 213.66810 * 13 11 9 42 42 H 1.09001 * 108.81149 * 197.41924 * 14 13 11 43 43 H 1.09001 * 108.72581 * 79.08531 * 14 13 11 44 44 H 1.09001 * 108.88237 * 197.50671 * 15 14 13 45 45 H 1.09006 * 108.79905 * 79.00593 * 15 14 13 46 46 H 1.09009 * 109.62369 * 334.43923 * 16 15 14 47 47 H 1.08997 * 109.79319 * 213.95630 * 16 15 14 48 48 H 1.09000 * 108.89710 * 159.26607 * 17 16 15 49 49 H 1.08997 * 108.81586 * 40.72090 * 17 16 15 50 50 H 1.09000 * 108.89332 * 301.17775 * 18 17 16 51 51 H 1.09003 * 108.81242 * 182.63845 * 18 17 16 52 52 H 1.08994 * 109.58649 * 174.42125 * 19 6 5 53 53 H 1.09001 * 109.58562 * 294.70805 * 19 6 5 54 54 H 0.97000 * 120.00021 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0437 -0.7310 -1.2441 5 6 3.5676 -0.8496 -1.1689 6 6 3.9569 -1.6657 0.0658 7 1 5.0412 -1.7696 0.1061 8 7 3.3411 -2.9928 -0.0112 9 6 3.8885 -4.0293 0.6541 10 8 4.8395 -3.8469 1.3844 11 6 3.3189 -5.4149 0.4904 12 6 2.1499 -5.6076 1.4585 13 6 4.3870 -6.4369 0.7716 14 6 5.8058 -5.8906 0.5224 15 6 5.9015 -5.0372 -0.7566 16 6 5.1331 -5.6329 -1.9051 17 6 3.7259 -5.0019 -1.9329 18 6 2.8280 -5.6054 -0.9592 19 6 3.4650 -0.9453 1.3251 20 7 2.0226 -0.6980 1.1955 21 6 1.1535 -1.1106 2.1701 22 1 0.2043 -1.5477 1.8974 23 6 1.4927 -0.9672 3.5084 24 7 1.1224 -1.8790 4.3825 25 14 2.4748 0.5195 4.0689 26 1 1.5525 1.6562 4.3197 27 1 3.2040 0.1885 5.3196 28 1 3.4488 0.8962 3.0131 29 1 -0.3633 0.5095 0.8925 30 1 -0.3632 0.5182 -0.8875 31 1 -0.3633 -1.0276 -0.0050 32 1 1.7660 -0.1696 -2.1361 33 1 1.6030 -1.7270 -1.2887 34 1 4.0062 0.1458 -1.0993 35 1 3.9377 -1.3478 -2.0649 36 1 2.5395 -3.1255 -0.5408 37 1 1.3759 -4.8705 1.2447 38 1 1.7402 -6.6105 1.3383 39 1 2.5011 -5.4792 2.4824 40 1 4.3082 -6.7523 1.8119 41 1 4.2246 -7.3024 0.1293 42 1 6.4958 -6.7302 0.4373 43 1 6.1003 -5.2794 1.3756 44 1 6.9494 -4.9467 -1.0427 45 1 5.5067 -4.0432 -0.5461 46 1 5.0483 -6.7111 -1.7688 47 1 5.6476 -5.4218 -2.8425 48 1 3.3022 -5.1278 -2.9292 49 1 3.8139 -3.9368 -1.7192 50 1 2.7473 -6.6723 -1.1673 51 1 1.8425 -5.1508 -1.0609 52 1 3.6517 -1.5690 2.1993 53 1 3.9921 0.0026 1.4332 54 1 1.3591 -1.7786 5.3178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071576611.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:54 Heat of formation + Delta-G solvation = -31.867339 kcal Electronic energy + Delta-G solvation = -31649.169949 eV Core-core repulsion = 28006.652584 eV Total energy + Delta-G solvation = -3642.517365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.38316 -39.83621 -37.84114 -35.95092 -34.74740 -34.45522 -33.20301 -32.48598 -31.68509 -28.61944 -27.95946 -26.62356 -25.46627 -24.86867 -24.03689 -23.07174 -21.93689 -20.86917 -20.41766 -20.23171 -18.32783 -17.52457 -16.98431 -16.74916 -16.73784 -16.15370 -15.94248 -15.55133 -15.39849 -15.16784 -15.00515 -14.49447 -14.39593 -14.15042 -14.08936 -13.96384 -13.73100 -13.47248 -13.39322 -13.22041 -12.93190 -12.83319 -12.71295 -12.58471 -12.52250 -12.39455 -12.19359 -12.06745 -11.81007 -11.60031 -11.59690 -11.39418 -11.30824 -11.22638 -11.15514 -11.06986 -10.95726 -10.46814 -10.11579 -9.62945 -8.51835 -8.23918 -5.44099 1.31676 1.38545 1.44690 1.95035 2.47187 2.50238 2.97060 3.46941 3.64495 3.67943 3.89999 3.97200 4.07709 4.11793 4.17032 4.26231 4.27585 4.37222 4.42146 4.50075 4.56333 4.59096 4.63605 4.69009 4.76503 4.79411 4.83023 4.85656 5.01398 5.02878 5.03641 5.08633 5.10923 5.13444 5.14347 5.16498 5.27534 5.30730 5.31908 5.33809 5.37318 5.40814 5.44303 5.45719 5.57813 5.63267 5.66966 5.70476 5.88220 5.97769 6.31041 6.83667 7.07593 7.58304 7.73249 8.23864 8.95636 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.005670 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.862778 B = 4936.770775 C = 5592.351279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.029 0.971 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.133 3.867 7 H 0.069 0.931 8 N -0.694 5.694 9 C 0.534 3.466 10 O -0.583 6.583 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.093 4.093 14 C -0.116 4.116 15 C -0.130 4.130 16 C -0.108 4.108 17 C -0.142 4.142 18 C -0.102 4.102 19 C 0.138 3.862 20 N -0.597 5.597 21 C -0.236 4.236 22 H 0.053 0.947 23 C 0.000 4.000 24 N -0.922 5.922 25 Si 0.884 3.116 26 H -0.291 1.291 27 H -0.314 1.314 28 H -0.251 1.251 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.069 0.931 52 H 0.024 0.976 53 H 0.021 0.979 54 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -6.902 -18.971 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.047 0.953 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.026 3.974 7 H 0.087 0.913 8 N -0.346 5.346 9 C 0.324 3.676 10 O -0.465 6.465 11 C -0.075 4.075 12 C -0.185 4.185 13 C -0.131 4.131 14 C -0.154 4.154 15 C -0.168 4.168 16 C -0.146 4.146 17 C -0.180 4.180 18 C -0.139 4.139 19 C 0.011 3.989 20 N -0.321 5.321 21 C -0.366 4.366 22 H 0.070 0.930 23 C -0.199 4.199 24 N -0.565 5.565 25 Si 0.713 3.287 26 H -0.218 1.218 27 H -0.242 1.242 28 H -0.176 1.176 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.242 0.758 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.088 0.912 52 H 0.043 0.957 53 H 0.039 0.961 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.058 -6.798 -18.332 20.196 hybrid contribution 0.120 0.985 1.749 2.010 sum 5.178 -5.813 -16.584 18.320 Atomic orbital electron populations 1.21689 0.94926 1.01088 1.00692 1.20898 0.94086 0.93633 0.86703 0.95343 1.21925 0.94908 1.00956 0.97972 1.21675 0.96990 1.00100 0.96020 1.21307 0.96440 0.83114 0.96509 0.91282 1.46008 1.30310 1.07712 1.50600 1.20630 0.81934 0.87327 0.77749 1.90596 1.30367 1.85882 1.39609 1.20605 0.96712 0.91623 0.98552 1.21731 0.96512 1.03045 0.97203 1.21218 0.93264 0.97223 1.01353 1.21960 0.96230 0.98779 0.98382 1.21607 1.00076 0.99964 0.95152 1.21295 0.95305 1.00626 0.97353 1.20871 0.95573 1.01593 0.99934 1.20555 0.99359 1.03507 0.90527 1.21509 0.85055 0.95807 0.96533 1.44396 1.01681 1.65864 1.20198 1.18390 1.01122 1.32342 0.84698 0.92995 1.26009 0.98497 0.98641 0.96722 1.70177 1.50333 1.32653 1.03310 0.86662 0.79627 0.85012 0.77405 1.21835 1.24238 1.17552 0.94800 0.90478 0.93736 0.88953 0.92203 0.90427 0.89328 0.75792 0.93289 0.89060 0.95365 0.93402 0.89168 0.92325 0.92874 0.93102 0.92752 0.90973 0.91119 0.89806 0.91383 0.89139 0.91211 0.95747 0.96082 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.06 71.98 0.58 -3.60 16 2 C 0.15 5.20 3.50 44.96 0.16 5.36 16 3 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 4 C -0.12 -2.97 5.20 30.66 0.16 -2.82 16 5 C -0.11 -2.71 5.58 30.62 0.17 -2.54 16 6 C 0.13 4.47 2.76 45.07 0.12 4.60 16 7 H 0.07 2.42 7.68 -2.39 -0.02 2.40 16 8 N -0.69 -22.34 2.91 -442.15 -1.29 -23.63 16 9 C 0.53 18.91 3.26 87.66 0.29 19.19 16 10 O -0.58 -25.37 11.99 -3.03 -0.04 -25.41 16 11 C -0.07 -2.03 0.73 -53.33 -0.04 -2.07 16 12 C -0.13 -4.04 8.15 71.98 0.59 -3.45 16 13 C -0.09 -2.45 4.62 30.14 0.14 -2.32 16 14 C -0.12 -3.29 5.07 31.31 0.16 -3.13 16 15 C -0.13 -3.36 5.15 30.13 0.16 -3.20 16 16 C -0.11 -2.05 5.61 30.20 0.17 -1.88 16 17 C -0.14 -2.62 5.08 28.74 0.15 -2.47 16 18 C -0.10 -2.04 3.80 28.74 0.11 -1.93 16 19 C 0.14 6.04 4.20 86.36 0.36 6.41 16 20 N -0.60 -26.35 2.39 -675.28 -1.61 -27.96 16 21 C -0.24 -12.66 8.42 84.03 0.71 -11.96 16 22 H 0.05 3.01 6.83 -2.91 -0.02 2.99 16 23 C 0.00 -0.01 4.80 84.86 0.41 0.39 16 24 N -0.92 -57.98 13.97 21.65 0.30 -57.67 16 25 Si 0.88 46.75 27.42 68.60 1.88 48.63 16 26 H -0.29 -15.21 7.11 99.48 0.71 -14.51 16 27 H -0.31 -17.32 7.11 99.48 0.71 -16.62 16 28 H -0.25 -12.60 5.31 99.48 0.53 -12.07 16 29 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.54 7.42 -2.39 -0.02 1.53 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.51 6.41 -2.39 -0.02 1.49 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.40 11.62 5.12 -92.71 -0.47 11.15 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.03 1.07 8.11 -2.39 -0.02 1.05 16 40 H 0.05 1.39 7.69 -2.39 -0.02 1.37 16 41 H 0.09 1.81 6.63 -2.39 -0.02 1.80 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.93 6.05 -2.39 -0.01 1.92 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 1.67 4.17 -2.38 -0.01 1.66 16 46 H 0.07 1.23 6.98 -2.38 -0.02 1.21 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.46 4.49 -2.39 -0.01 1.45 16 50 H 0.09 1.43 7.47 -2.39 -0.02 1.41 16 51 H 0.07 1.34 7.63 -2.39 -0.02 1.33 16 52 H 0.02 1.30 6.92 -2.39 -0.02 1.28 16 53 H 0.02 0.95 6.75 -2.39 -0.02 0.93 16 54 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.41 374.08 3.85 -66.56 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.22 Total: 24.90 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.38 Total: -5.42 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -2.60 Total: -109.26 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.04 Total: -25.41 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.88 Total: 48.63 kcal Total: -70.41 3.85 -66.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071576611.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.691 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds