Wall clock time and date at job start Tue Mar 31 2020 15:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.69844 * 2 1 4 4 C 1.53195 * 109.58670 * 239.64842 * 2 1 3 5 5 C 1.53031 * 109.31281 * 185.57926 * 4 2 1 6 6 C 1.53034 * 109.54181 * 61.36172 * 5 4 2 7 7 H 1.09005 * 109.49990 * 58.58898 * 6 5 4 8 8 N 1.46505 * 109.50368 * 178.65160 * 6 5 4 9 9 C 1.34776 * 120.00376 * 204.93815 * 8 6 5 10 10 O 1.21280 * 120.00029 * 354.74452 * 9 8 6 11 11 C 1.50697 * 119.99937 * 174.74400 * 9 8 6 12 12 C 1.53004 * 109.62560 * 277.09766 * 11 9 8 13 13 C 1.50468 * 109.62859 * 156.51188 * 11 9 8 14 14 C 1.54066 * 112.50140 * 334.44105 * 13 11 9 15 15 C 1.54066 * 112.81644 * 318.28608 * 14 13 11 16 16 C 1.50469 * 112.49851 * 318.28132 * 15 14 13 17 17 C 1.54247 * 108.52752 * 94.14559 * 16 15 14 18 18 C 1.45535 * 112.40561 * 280.02224 * 17 16 15 19 19 C 1.53190 * 109.34324 * 298.62175 * 6 5 4 20 20 N 1.46920 * 109.58457 * 120.35887 * 2 1 3 21 21 C 1.36942 * 120.63339 * 353.42032 * 20 2 1 22 22 H 1.07994 * 120.00160 * 37.26879 * 21 20 2 23 23 C 1.38810 * 119.99600 * 217.27627 * 21 20 2 24 24 N 1.31617 * 120.00514 * 359.23780 * 23 21 20 25 25 Si 1.86800 * 119.99725 * 179.24598 * 23 21 20 26 26 H 1.48493 * 109.47190 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47219 * 119.99818 * 25 23 21 28 28 H 1.48501 * 109.47002 * 239.99505 * 25 23 21 29 29 H 1.09003 * 109.46827 * 180.35142 * 1 2 3 30 30 H 1.08995 * 109.47182 * 300.35171 * 1 2 3 31 31 H 1.09002 * 109.47016 * 60.35839 * 1 2 3 32 32 H 1.08998 * 109.49635 * 65.62166 * 4 2 1 33 33 H 1.09004 * 109.52236 * 305.54557 * 4 2 1 34 34 H 1.09004 * 109.46114 * 301.34530 * 5 4 2 35 35 H 1.08999 * 109.45123 * 181.38232 * 5 4 2 36 36 H 0.97004 * 119.99252 * 24.93683 * 8 6 5 37 37 H 1.08992 * 109.47244 * 60.00244 * 12 11 9 38 38 H 1.09006 * 109.46676 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.47068 * 299.99845 * 12 11 9 40 40 H 1.09001 * 108.87996 * 95.21874 * 13 11 9 41 41 H 1.08999 * 108.88115 * 213.66641 * 13 11 9 42 42 H 1.09001 * 108.81827 * 197.42374 * 14 13 11 43 43 H 1.09000 * 108.81149 * 79.14015 * 14 13 11 44 44 H 1.09000 * 108.87878 * 197.50326 * 15 14 13 45 45 H 1.09003 * 108.79964 * 79.00158 * 15 14 13 46 46 H 1.09008 * 109.62840 * 334.44039 * 16 15 14 47 47 H 1.08998 * 109.63310 * 213.86352 * 16 15 14 48 48 H 1.09004 * 108.89367 * 159.26172 * 17 16 15 49 49 H 1.09000 * 108.89029 * 40.77195 * 17 16 15 50 50 H 1.09000 * 108.89555 * 301.17474 * 18 17 16 51 51 H 1.09010 * 108.89160 * 182.68946 * 18 17 16 52 52 H 1.08999 * 109.59212 * 174.43353 * 19 6 5 53 53 H 1.08996 * 109.58397 * 294.86470 * 19 6 5 54 54 H 0.97002 * 120.00439 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 6 3.9569 -1.6657 0.0633 7 1 3.4984 -2.6529 0.0051 8 7 5.4143 -1.8060 0.1170 9 6 5.9674 -2.8483 0.7682 10 8 5.2648 -3.6169 1.3898 11 6 7.4590 -3.0587 0.7239 12 6 7.8361 -3.7954 -0.5630 13 6 7.8914 -3.8654 1.9181 14 6 6.9256 -3.7191 3.1095 15 6 6.4472 -2.2692 3.3163 16 6 7.5562 -1.2669 3.1440 17 6 7.5385 -0.7619 1.6867 18 6 8.1763 -1.6940 0.7688 19 6 3.4657 -0.9474 1.3241 20 7 2.0225 -0.6996 1.1944 21 6 1.1536 -1.1137 2.1685 22 1 0.1802 -1.4948 1.8973 23 6 1.5240 -1.0433 3.5044 24 7 2.7159 -0.5928 3.8341 25 14 0.3308 -1.5884 4.8343 26 1 -0.9332 -2.0500 4.2063 27 1 0.9320 -2.7006 5.6132 28 1 0.0448 -0.4474 5.7407 29 1 -0.3633 -1.0277 0.0063 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 1.7660 -0.1667 -2.1368 33 1 1.6030 -1.7253 -1.2920 34 1 4.0062 0.1474 -1.0993 35 1 3.9376 -1.3448 -2.0670 36 1 5.9810 -1.1486 -0.3162 37 1 7.5284 -3.2027 -1.4244 38 1 8.9152 -3.9465 -0.5922 39 1 7.3333 -4.7621 -0.5889 40 1 7.9437 -4.9163 1.6336 41 1 8.8836 -3.5356 2.2261 42 1 7.4308 -4.0550 4.0150 43 1 6.0569 -4.3547 2.9379 44 1 6.0379 -2.1729 4.3219 45 1 5.6606 -2.0524 2.5935 46 1 8.5146 -1.7413 3.3554 47 1 7.4015 -0.4291 3.8238 48 1 8.0599 0.1941 1.6381 49 1 6.5039 -0.6138 1.3771 50 1 9.2086 -1.8480 1.0828 51 1 8.1745 -1.2611 -0.2317 52 1 3.6529 -1.5724 2.1972 53 1 3.9910 0.0016 1.4320 54 1 2.9748 -0.5440 4.7677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071576613.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:02 Heat of formation + Delta-G solvation = -37.215456 kcal Electronic energy + Delta-G solvation = -31233.026862 eV Core-core repulsion = 27590.277585 eV Total energy + Delta-G solvation = -3642.749277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.37756 -39.60262 -37.91522 -36.15503 -34.74330 -34.62471 -33.21971 -31.87470 -31.54831 -28.60268 -27.75038 -26.82218 -25.47972 -24.73960 -23.86865 -23.02514 -21.78084 -21.21518 -20.69091 -19.95447 -18.27949 -17.36289 -17.19357 -16.95865 -16.54341 -16.08903 -15.76938 -15.64682 -15.34505 -15.05387 -14.95354 -14.65878 -14.14598 -14.12547 -14.07028 -13.87530 -13.56246 -13.42821 -13.20133 -13.00122 -12.82381 -12.77390 -12.70103 -12.53738 -12.46575 -12.37275 -12.22395 -12.01043 -11.87292 -11.61450 -11.59526 -11.43790 -11.35577 -11.19862 -11.15886 -11.07413 -10.93279 -10.51094 -10.09906 -9.76474 -8.45759 -7.81473 -5.38671 1.38517 1.40824 1.49703 1.92341 2.35983 2.50428 3.33444 3.59480 3.65820 3.77455 3.89921 3.99378 4.07866 4.11377 4.23263 4.25565 4.30155 4.37646 4.43086 4.49611 4.52323 4.57185 4.67946 4.74219 4.83883 4.84972 4.88026 4.91574 5.00230 5.01961 5.04208 5.08005 5.10136 5.15922 5.20826 5.26436 5.29499 5.33385 5.36668 5.37751 5.39529 5.44380 5.45251 5.56112 5.60427 5.64437 5.71039 5.74759 5.79657 5.95685 6.49591 6.81170 7.21956 7.57616 7.92470 8.44687 9.20069 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.005498 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.585115 B = 5091.917918 C = 6387.409959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.130 3.870 7 H 0.043 0.957 8 N -0.713 5.713 9 C 0.524 3.476 10 O -0.577 6.577 11 C -0.072 4.072 12 C -0.130 4.130 13 C -0.090 4.090 14 C -0.113 4.113 15 C -0.135 4.135 16 C -0.106 4.106 17 C -0.142 4.142 18 C -0.102 4.102 19 C 0.186 3.814 20 N -0.605 5.605 21 C -0.253 4.253 22 H 0.065 0.935 23 C -0.043 4.043 24 N -0.921 5.921 25 Si 0.953 3.047 26 H -0.264 1.264 27 H -0.301 1.301 28 H -0.288 1.288 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.408 0.592 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.053 0.947 53 H -0.011 1.011 54 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 -0.768 -12.735 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.037 0.963 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.061 0.939 8 N -0.365 5.365 9 C 0.313 3.687 10 O -0.456 6.456 11 C -0.075 4.075 12 C -0.187 4.187 13 C -0.128 4.128 14 C -0.150 4.150 15 C -0.173 4.173 16 C -0.143 4.143 17 C -0.180 4.180 18 C -0.139 4.139 19 C 0.060 3.940 20 N -0.329 5.329 21 C -0.384 4.384 22 H 0.082 0.918 23 C -0.239 4.239 24 N -0.566 5.566 25 Si 0.782 3.218 26 H -0.188 1.188 27 H -0.229 1.229 28 H -0.215 1.215 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.245 0.755 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.063 0.937 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.115 0.885 51 H 0.109 0.891 52 H 0.071 0.929 53 H 0.007 0.993 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.615 -1.291 -12.175 18.310 hybrid contribution -0.939 -0.003 1.696 1.938 sum 12.676 -1.295 -10.479 16.498 Atomic orbital electron populations 1.21702 0.94901 1.00923 1.00895 1.20793 0.94152 0.93288 0.86912 0.96273 1.21946 0.94821 1.00652 0.98324 1.21640 0.96878 0.99900 0.96180 1.21478 0.80103 0.98512 0.97560 0.93874 1.46200 1.06978 1.27497 1.55874 1.21011 0.91465 0.79759 0.76459 1.90690 1.65206 1.47871 1.41857 1.20701 0.89348 0.98860 0.98636 1.21827 1.03546 0.99354 0.93971 1.21232 0.99051 0.99842 0.92656 1.21945 0.99293 0.96039 0.97733 1.21658 0.99502 0.95981 1.00160 1.21249 0.98528 0.97378 0.97179 1.20835 1.02116 1.00132 0.94877 1.20596 1.00420 0.92003 1.00872 1.20796 0.83307 0.94807 0.95139 1.44286 1.02649 1.65501 1.20482 1.19319 0.98217 1.34926 0.85890 0.91784 1.26005 0.98151 1.00041 0.99752 1.70113 1.19854 1.50938 1.15735 0.85412 0.79638 0.76848 0.79920 1.18788 1.22875 1.21453 0.93850 0.94374 0.90447 0.88865 0.93235 0.91178 0.89797 0.75477 0.90995 0.88588 0.93522 0.91620 0.89113 0.93227 0.93089 0.96718 0.91845 0.90025 0.93713 0.90123 0.92849 0.88509 0.89100 0.92890 0.99315 0.94820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.02 71.98 0.58 -4.12 16 2 C 0.15 6.26 3.50 44.98 0.16 6.42 16 3 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -3.77 5.37 30.67 0.16 -3.61 16 5 C -0.11 -3.25 5.35 30.62 0.16 -3.08 16 6 C 0.13 5.09 2.56 45.07 0.12 5.21 16 7 H 0.04 1.99 7.66 -2.38 -0.02 1.97 16 8 N -0.71 -22.63 3.50 -442.16 -1.55 -24.18 16 9 C 0.52 17.81 3.28 87.66 0.29 18.09 16 10 O -0.58 -26.04 11.84 -3.03 -0.04 -26.08 16 11 C -0.07 -1.68 0.73 -53.33 -0.04 -1.72 16 12 C -0.13 -2.23 8.15 71.98 0.59 -1.65 16 13 C -0.09 -2.24 4.63 30.14 0.14 -2.10 16 14 C -0.11 -3.89 5.06 31.32 0.16 -3.73 16 15 C -0.14 -5.31 5.13 30.14 0.15 -5.15 16 16 C -0.11 -3.15 5.61 30.20 0.17 -2.98 16 17 C -0.14 -3.50 5.06 28.74 0.15 -3.36 16 18 C -0.10 -1.82 3.80 28.73 0.11 -1.71 16 19 C 0.19 9.36 4.53 86.35 0.39 9.75 16 20 N -0.60 -31.06 2.98 -675.05 -2.01 -33.07 16 21 C -0.25 -14.39 8.37 84.03 0.70 -13.68 16 22 H 0.06 3.58 6.44 -2.91 -0.02 3.56 16 23 C -0.04 -2.56 5.25 84.86 0.45 -2.11 16 24 N -0.92 -57.10 10.91 21.65 0.24 -56.87 16 25 Si 0.95 47.96 29.55 68.60 2.03 49.99 16 26 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 28 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 29 H 0.04 1.66 7.37 -2.39 -0.02 1.64 16 30 H 0.04 1.56 7.71 -2.39 -0.02 1.54 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 10.00 6.61 -92.71 -0.61 9.39 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.05 0.95 8.11 -2.39 -0.02 0.93 16 40 H 0.07 1.56 7.69 -2.39 -0.02 1.54 16 41 H 0.09 1.72 6.63 -2.39 -0.02 1.71 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 2.16 6.03 -2.39 -0.01 2.15 16 44 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 2.90 2.84 -2.39 -0.01 2.90 16 46 H 0.08 1.97 6.98 -2.38 -0.02 1.96 16 47 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.05 1.65 4.51 -2.39 -0.01 1.64 16 50 H 0.10 1.29 7.47 -2.39 -0.02 1.27 16 51 H 0.09 1.16 7.64 -2.38 -0.02 1.15 16 52 H 0.05 3.21 5.18 -2.39 -0.01 3.19 16 53 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 54 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -75.14 377.53 3.36 -71.78 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.26 Total: 27.96 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.43 Total: -9.53 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.32 Total: -114.12 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.04 Total: -26.08 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -75.14 3.36 -71.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071576613.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.569 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds