Wall clock time and date at job start Tue Mar 31 2020 15:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.70094 * 2 1 4 4 C 1.53625 * 109.65853 * 120.58585 * 2 1 3 5 5 C 1.53043 * 109.23975 * 174.55387 * 4 2 1 6 6 C 1.53043 * 109.53175 * 298.50746 * 5 4 2 7 7 H 1.09002 * 109.52512 * 181.33376 * 6 5 4 8 8 N 1.46502 * 109.50149 * 301.41417 * 6 5 4 9 9 C 1.34771 * 120.00203 * 204.84175 * 8 6 5 10 10 O 1.21280 * 120.00002 * 3.91294 * 9 8 6 11 11 C 1.50703 * 120.00225 * 183.91794 * 9 8 6 12 12 C 1.53010 * 109.62325 * 274.64092 * 11 9 8 13 13 C 1.50470 * 109.63017 * 154.05720 * 11 9 8 14 14 C 1.54063 * 112.49874 * 334.43645 * 13 11 9 15 15 C 1.54065 * 112.81978 * 318.28895 * 14 13 11 16 16 C 1.50470 * 112.49358 * 318.28267 * 15 14 13 17 17 C 1.54237 * 108.52714 * 94.15137 * 16 15 14 18 18 C 1.45545 * 112.40409 * 280.01458 * 17 16 15 19 19 C 1.53195 * 109.31448 * 61.36829 * 6 5 4 20 20 N 1.46920 * 108.77328 * 305.36174 * 19 6 5 21 21 C 1.36932 * 120.63237 * 233.58365 * 20 19 6 22 22 H 1.08003 * 120.00302 * 145.34506 * 21 20 19 23 23 C 1.38810 * 119.99843 * 325.62457 * 21 20 19 24 24 N 1.31613 * 120.00024 * 352.77973 * 23 21 20 25 25 Si 1.86803 * 119.99977 * 172.78333 * 23 21 20 26 26 H 1.48503 * 109.47290 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47045 * 119.99798 * 25 23 21 28 28 H 1.48493 * 109.47082 * 239.99620 * 25 23 21 29 29 H 1.09000 * 109.47662 * 180.35886 * 1 2 3 30 30 H 1.09001 * 109.47466 * 300.36615 * 1 2 3 31 31 H 1.08999 * 109.46999 * 60.36012 * 1 2 3 32 32 H 1.08999 * 109.63799 * 54.55749 * 4 2 1 33 33 H 1.09007 * 109.43076 * 294.41797 * 4 2 1 34 34 H 1.09003 * 109.45787 * 178.49187 * 5 4 2 35 35 H 1.08996 * 109.46255 * 58.52647 * 5 4 2 36 36 H 0.97004 * 119.99668 * 24.83827 * 8 6 5 37 37 H 1.09003 * 109.47076 * 60.00080 * 12 11 9 38 38 H 1.08995 * 109.46752 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.46991 * 299.99891 * 12 11 9 40 40 H 1.08995 * 108.87719 * 95.22139 * 13 11 9 41 41 H 1.09003 * 108.87418 * 213.65899 * 13 11 9 42 42 H 1.09000 * 108.81450 * 197.42271 * 14 13 11 43 43 H 1.08999 * 108.81260 * 79.14932 * 14 13 11 44 44 H 1.08994 * 108.87777 * 197.50149 * 15 14 13 45 45 H 1.08997 * 108.79758 * 79.00303 * 15 14 13 46 46 H 1.08993 * 109.63311 * 334.43472 * 16 15 14 47 47 H 1.09008 * 109.78320 * 213.95256 * 16 15 14 48 48 H 1.09000 * 108.89631 * 159.25413 * 17 16 15 49 49 H 1.09007 * 108.81678 * 40.71378 * 17 16 15 50 50 H 1.08997 * 108.88986 * 301.17578 * 18 17 16 51 51 H 1.09003 * 108.81249 * 182.63637 * 18 17 16 52 52 H 1.08995 * 109.58671 * 185.57200 * 19 6 5 53 53 H 1.09004 * 109.58301 * 65.14805 * 19 6 5 54 54 H 0.97005 * 120.00188 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0468 -0.7361 1.2454 5 6 3.5711 -0.8496 1.1679 6 6 3.9614 -1.6628 -0.0685 7 1 5.0459 -1.7637 -0.1107 8 7 3.3493 -2.9917 0.0070 9 6 3.9065 -4.0285 -0.6495 10 8 4.9526 -3.8779 -1.2443 11 6 3.2295 -5.3749 -0.6447 12 6 3.6388 -6.1513 0.6086 13 6 3.6280 -6.1455 -1.8741 14 6 4.0407 -5.2252 -3.0387 15 6 3.1194 -3.9992 -3.1869 16 6 1.6664 -4.3458 -3.0056 17 6 1.2833 -4.0971 -1.5325 18 6 1.6989 -5.1853 -0.6599 19 6 3.4656 -0.9422 -1.3262 20 7 2.0226 -0.6997 -1.1943 21 6 1.1538 -1.1129 -2.1688 22 1 0.1661 -1.4581 -1.9008 23 6 1.5446 -1.0936 -3.5006 24 7 2.6925 -0.5476 -3.8418 25 14 0.4411 -1.8426 -4.8087 26 1 -0.7842 -2.3870 -4.1703 27 1 0.0628 -0.7983 -5.7944 28 1 1.1672 -2.9372 -5.5013 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3634 0.5195 0.8867 31 1 -0.3633 0.5082 -0.8932 32 1 1.6095 -1.7336 1.2892 33 1 1.7686 -0.1768 2.1388 34 1 3.9441 -1.3478 2.0628 35 1 4.0064 0.1473 1.0992 36 1 2.5431 -3.1253 0.5295 37 1 3.3401 -5.5928 1.4957 38 1 3.1482 -7.1246 0.6093 39 1 4.7199 -6.2898 0.6134 40 1 4.4655 -6.7973 -1.6258 41 1 2.7868 -6.7613 -2.1924 42 1 4.0152 -5.7982 -3.9656 43 1 5.0606 -4.8800 -2.8695 44 1 3.2588 -3.5713 -4.1795 45 1 3.4006 -3.2564 -2.4404 46 1 1.5065 -5.3950 -3.2534 47 1 1.0540 -3.7190 -3.6540 48 1 0.2016 -3.9827 -1.4635 49 1 1.7575 -3.1747 -1.1968 50 1 1.2321 -6.1092 -1.0012 51 1 1.3594 -4.9723 0.3538 52 1 3.6533 -1.5640 -2.2015 53 1 3.9878 0.0088 -1.4321 54 1 2.9654 -0.5338 -4.7725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071576614.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:06 Heat of formation + Delta-G solvation = -22.548442 kcal Electronic energy + Delta-G solvation = -32897.319382 eV Core-core repulsion = 29255.206114 eV Total energy + Delta-G solvation = -3642.113267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.40749 -39.56427 -37.92346 -35.84794 -34.74370 -34.37217 -33.17335 -31.71626 -31.49469 -28.55908 -27.79791 -26.77919 -25.41265 -24.79225 -23.77422 -22.95732 -21.89823 -20.86471 -20.28113 -20.14600 -18.12108 -17.40350 -17.03891 -16.83389 -16.60206 -16.11696 -15.69888 -15.57809 -15.25367 -14.99006 -14.66329 -14.55631 -14.18476 -14.03680 -14.01221 -13.83242 -13.72186 -13.45348 -13.11150 -12.91076 -12.87478 -12.63255 -12.50742 -12.41229 -12.39589 -12.35008 -12.07208 -12.02201 -11.87497 -11.53475 -11.48461 -11.30206 -11.16176 -11.05110 -10.97397 -10.91244 -10.74432 -10.39156 -10.08273 -9.58848 -8.35354 -7.71027 -5.19855 1.36539 1.40416 1.46181 1.97131 2.51850 2.54866 3.48486 3.68344 3.72301 3.74675 3.96827 4.09704 4.16065 4.20272 4.25678 4.30258 4.33857 4.43540 4.54741 4.59038 4.59423 4.69118 4.74197 4.81675 4.87693 4.90805 4.91530 5.05500 5.05950 5.06696 5.10904 5.14619 5.17793 5.18810 5.25461 5.32998 5.34209 5.39054 5.42522 5.43342 5.47381 5.51150 5.62438 5.65025 5.70515 5.73663 5.83596 5.93502 5.98470 6.09703 6.58417 6.88151 7.32501 7.61534 8.02977 8.56612 9.32901 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.008857 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.584404 B = 3160.741512 C = 4416.346146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.123 3.877 7 H 0.058 0.942 8 N -0.696 5.696 9 C 0.529 3.471 10 O -0.583 6.583 11 C -0.074 4.074 12 C -0.129 4.129 13 C -0.089 4.089 14 C -0.116 4.116 15 C -0.127 4.127 16 C -0.103 4.103 17 C -0.156 4.156 18 C -0.101 4.101 19 C 0.163 3.837 20 N -0.588 5.588 21 C -0.208 4.208 22 H 0.069 0.931 23 C -0.018 4.018 24 N -0.928 5.928 25 Si 0.916 3.084 26 H -0.261 1.261 27 H -0.318 1.318 28 H -0.300 1.300 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.000 1.000 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.029 0.971 48 H 0.052 0.948 49 H 0.112 0.888 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.071 0.929 53 H -0.013 1.013 54 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -9.828 14.154 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.027 0.973 4 C -0.157 4.157 5 C -0.149 4.149 6 C 0.016 3.984 7 H 0.076 0.924 8 N -0.349 5.349 9 C 0.318 3.682 10 O -0.464 6.464 11 C -0.077 4.077 12 C -0.186 4.186 13 C -0.127 4.127 14 C -0.154 4.154 15 C -0.164 4.164 16 C -0.140 4.140 17 C -0.194 4.194 18 C -0.138 4.138 19 C 0.036 3.964 20 N -0.312 5.312 21 C -0.339 4.339 22 H 0.087 0.913 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.750 3.250 26 H -0.185 1.185 27 H -0.248 1.248 28 H -0.228 1.228 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.019 0.981 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.130 0.870 50 H 0.100 0.900 51 H 0.103 0.897 52 H 0.089 0.911 53 H 0.005 0.995 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.650 -9.690 13.611 16.789 hybrid contribution -0.502 0.345 -2.075 2.163 sum -2.153 -9.345 11.536 15.001 Atomic orbital electron populations 1.21702 0.94779 1.01410 1.00553 1.20833 0.93968 0.93034 0.87276 0.97269 1.22016 0.94562 1.01015 0.98092 1.21646 0.97355 0.99703 0.96189 1.21472 0.96219 0.83067 0.97642 0.92354 1.46032 1.29952 1.07814 1.51072 1.20749 0.84257 0.86673 0.76523 1.90611 1.25954 1.85411 1.44450 1.20668 0.96506 0.91999 0.98526 1.21824 1.01595 1.00867 0.94308 1.21198 1.01762 0.97015 0.92701 1.22024 1.00178 0.95659 0.97533 1.21626 0.95450 0.98955 1.00389 1.21225 0.95532 0.99284 0.97998 1.21080 1.01390 1.02731 0.94157 1.20604 0.92188 1.00109 1.00881 1.21032 0.84268 0.95230 0.95838 1.44157 1.01934 1.65228 1.19863 1.19036 0.96702 1.33171 0.84975 0.91321 1.25385 0.97306 1.00346 0.98359 1.70053 1.23006 1.49212 1.15263 0.86142 0.80358 0.76882 0.81652 1.18523 1.24752 1.22814 0.92744 0.91119 0.94716 0.91669 0.89705 0.90019 0.91534 0.75698 0.90975 0.89108 0.92814 0.91031 0.90249 0.94040 0.92017 0.98142 0.88848 0.92265 0.95300 0.92912 0.87003 0.89976 0.89683 0.91130 0.99546 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.00 71.98 0.58 -3.47 16 2 C 0.15 5.47 3.51 45.12 0.16 5.63 16 3 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.12 -3.11 5.23 30.82 0.16 -2.95 16 5 C -0.11 -3.08 5.58 30.62 0.17 -2.91 16 6 C 0.12 4.43 2.84 45.07 0.13 4.55 16 7 H 0.06 2.29 7.53 -2.39 -0.02 2.27 16 8 N -0.70 -22.32 2.98 -442.15 -1.32 -23.63 16 9 C 0.53 18.20 3.30 87.66 0.29 18.48 16 10 O -0.58 -24.97 12.04 -3.03 -0.04 -25.00 16 11 C -0.07 -1.95 0.73 -53.32 -0.04 -1.99 16 12 C -0.13 -2.43 8.15 71.99 0.59 -1.85 16 13 C -0.09 -2.52 4.62 30.14 0.14 -2.38 16 14 C -0.12 -4.37 5.06 31.31 0.16 -4.21 16 15 C -0.13 -5.59 4.72 30.14 0.14 -5.45 16 16 C -0.10 -4.08 5.12 30.19 0.15 -3.93 16 17 C -0.16 -5.22 4.18 28.74 0.12 -5.10 16 18 C -0.10 -2.45 3.80 28.73 0.11 -2.34 16 19 C 0.16 7.57 4.44 86.36 0.38 7.95 16 20 N -0.59 -25.75 2.45 -674.43 -1.65 -27.40 16 21 C -0.21 -10.06 5.69 84.03 0.48 -9.58 16 22 H 0.07 3.26 6.39 -2.91 -0.02 3.24 16 23 C -0.02 -0.99 4.32 84.86 0.37 -0.62 16 24 N -0.93 -54.45 11.09 21.65 0.24 -54.21 16 25 Si 0.92 45.72 25.64 68.60 1.76 47.48 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 28 H -0.30 -15.49 6.95 99.48 0.69 -14.80 16 29 H 0.05 1.69 7.42 -2.39 -0.02 1.68 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.27 7.67 -2.39 -0.02 1.25 16 32 H 0.06 1.61 6.40 -2.39 -0.02 1.60 16 33 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.40 11.14 5.05 -92.71 -0.47 10.67 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.10 8.11 -2.39 -0.02 1.09 16 40 H 0.07 1.82 7.69 -2.39 -0.02 1.80 16 41 H 0.08 1.94 6.63 -2.39 -0.02 1.93 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 2.61 6.06 -2.39 -0.01 2.59 16 44 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.09 4.36 1.52 -2.39 0.00 4.35 16 46 H 0.06 2.05 6.98 -2.39 -0.02 2.04 16 47 H 0.03 1.29 2.79 -2.38 -0.01 1.28 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 49 H 0.11 4.10 1.89 -2.38 0.00 4.10 16 50 H 0.08 1.72 7.47 -2.39 -0.02 1.70 16 51 H 0.08 1.63 7.63 -2.39 -0.02 1.61 16 52 H 0.07 3.84 3.87 -2.39 -0.01 3.83 16 53 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 54 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -65.69 353.64 3.50 -62.19 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.42 Total: 30.75 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.08 Total: -10.17 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -2.73 Total: -105.25 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.76 Total: 47.48 kcal Total: -65.69 3.50 -62.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071576614.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.644 kcal (2) G-P(sol) polarization free energy of solvation -65.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds