Wall clock time and date at job start Tue Mar 31 2020 15:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.58694 * 2 1 4 4 C 1.53196 * 109.58384 * 239.57492 * 2 1 3 5 5 C 1.53041 * 109.31026 * 185.57853 * 4 2 1 6 6 C 1.53035 * 109.53888 * 61.36206 * 5 4 2 7 7 H 1.09005 * 109.52520 * 58.60234 * 6 5 4 8 8 N 1.46503 * 109.49752 * 178.67955 * 6 5 4 9 9 C 1.34777 * 119.99826 * 204.83561 * 8 6 5 10 10 O 1.21283 * 120.00368 * 0.02562 * 9 8 6 11 11 C 1.50699 * 119.99503 * 180.02562 * 9 8 6 12 12 C 1.53016 * 109.47577 * 300.00365 * 11 9 8 13 13 C 1.52988 * 109.45863 * 164.04593 * 12 11 9 14 14 C 1.52984 * 109.51316 * 315.98725 * 13 12 11 15 15 C 1.53011 * 109.46584 * 112.94003 * 14 13 12 16 16 C 1.53009 * 109.43186 * 284.04260 * 15 14 13 17 17 C 1.52988 * 109.48297 * 75.96288 * 16 15 14 18 18 C 1.52995 * 109.50416 * 247.06499 * 17 16 15 19 19 C 1.53192 * 109.31453 * 298.63688 * 6 5 4 20 20 N 1.46918 * 109.58853 * 120.28510 * 2 1 3 21 21 C 1.36943 * 120.63166 * 353.37248 * 20 2 1 22 22 H 1.08005 * 119.99483 * 41.20080 * 21 20 2 23 23 C 1.38807 * 120.00159 * 221.20417 * 21 20 2 24 24 N 1.31613 * 119.99871 * 214.88513 * 23 21 20 25 25 Si 1.86803 * 120.00078 * 34.88512 * 23 21 20 26 26 H 1.48508 * 109.46998 * 84.62791 * 25 23 21 27 27 H 1.48492 * 109.47195 * 204.62409 * 25 23 21 28 28 H 1.48499 * 109.47226 * 324.62831 * 25 23 21 29 29 H 1.09007 * 109.46899 * 299.71776 * 1 2 3 30 30 H 1.09002 * 109.47168 * 59.71511 * 1 2 3 31 31 H 1.08993 * 109.47188 * 179.71724 * 1 2 3 32 32 H 1.08996 * 109.49895 * 305.52930 * 4 2 1 33 33 H 1.08997 * 109.49553 * 65.62946 * 4 2 1 34 34 H 1.09002 * 109.45996 * 301.34013 * 5 4 2 35 35 H 1.08999 * 109.45947 * 181.38894 * 5 4 2 36 36 H 0.97001 * 119.99714 * 24.84459 * 8 6 5 37 37 H 1.09004 * 109.47221 * 60.01001 * 11 9 8 38 38 H 1.08994 * 109.47553 * 284.04508 * 12 11 9 39 39 H 1.09003 * 109.46699 * 44.05264 * 12 11 9 40 40 H 1.09009 * 109.46518 * 195.97731 * 13 12 11 41 41 H 1.09002 * 109.46859 * 76.00415 * 13 12 11 42 42 H 1.09001 * 109.47009 * 352.94065 * 14 13 12 43 43 H 1.09002 * 109.47409 * 232.93596 * 14 13 12 44 44 H 1.08996 * 109.47748 * 164.06000 * 15 14 13 45 45 H 1.08997 * 109.48956 * 44.03559 * 15 14 13 46 46 H 1.09005 * 109.46956 * 315.96424 * 16 15 14 47 47 H 1.08991 * 109.47322 * 195.96976 * 16 15 14 48 48 H 1.08996 * 109.46279 * 127.06190 * 17 16 15 49 49 H 1.09001 * 109.45902 * 7.07237 * 17 16 15 50 50 H 1.09002 * 109.48005 * 284.01847 * 18 17 16 51 51 H 1.09000 * 109.47633 * 164.00775 * 18 17 16 52 52 H 1.09003 * 109.58454 * 294.84303 * 19 6 5 53 53 H 1.09000 * 109.58776 * 174.42148 * 19 6 5 54 54 H 0.97009 * 120.00099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5675 -0.8495 -1.1692 6 6 3.9569 -1.6656 0.0654 7 1 3.4987 -2.6531 0.0088 8 7 5.4142 -1.8052 0.1196 9 6 5.9677 -2.8455 0.7739 10 8 5.2593 -3.6662 1.3175 11 6 7.4668 -2.9887 0.8300 12 6 8.0214 -3.1085 -0.5911 13 6 9.5301 -2.8556 -0.5723 14 6 9.8346 -1.6466 0.3142 15 6 10.6061 -2.1046 1.5537 16 6 9.6433 -2.7818 2.5311 17 6 9.3058 -4.1855 2.0249 18 6 7.8298 -4.2438 1.6266 19 6 3.4650 -0.9453 1.3248 20 7 2.0226 -0.6980 1.1953 21 6 1.1538 -1.1100 2.1704 22 1 0.2056 -1.5497 1.8981 23 6 1.4917 -0.9624 3.5085 24 7 1.1109 -1.8655 4.3869 25 14 2.4870 0.5180 4.0628 26 1 1.5752 1.6648 4.3055 27 1 3.2104 0.1869 5.3166 28 1 3.4666 0.8794 3.0068 29 1 -0.3633 0.5095 0.8926 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 -1.0276 -0.0051 32 1 1.6029 -1.7269 -1.2893 33 1 1.7660 -0.1694 -2.1366 34 1 4.0061 0.1460 -1.0996 35 1 3.9378 -1.3473 -2.0653 36 1 5.9808 -1.1489 -0.3154 37 1 7.8975 -2.1130 1.3156 38 1 7.8255 -4.1098 -0.9744 39 1 7.5375 -2.3724 -1.2331 40 1 9.8781 -2.6591 -1.5865 41 1 10.0408 -3.7337 -0.1770 42 1 8.9003 -1.1764 0.6209 43 1 10.4364 -0.9292 -0.2438 44 1 11.0654 -1.2414 2.0354 45 1 11.3815 -2.8115 1.2588 46 1 8.7289 -2.1934 2.6069 47 1 10.1120 -2.8526 3.5126 48 1 9.4979 -4.9122 2.8142 49 1 9.9253 -4.4177 1.1585 50 1 7.2130 -4.2956 2.5238 51 1 7.6535 -5.1272 1.0129 52 1 3.9904 0.0038 1.4316 53 1 3.6518 -1.5690 2.1990 54 1 1.3467 -1.7622 5.3222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673751.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:10 Heat of formation + Delta-G solvation = -51.208643 kcal Electronic energy + Delta-G solvation = -29653.623660 eV Core-core repulsion = 26010.267593 eV Total energy + Delta-G solvation = -3643.356067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.57171 -39.95682 -38.90265 -36.07304 -34.67523 -34.03495 -33.66637 -32.57297 -32.02719 -28.49294 -27.58159 -26.82693 -26.39441 -24.27786 -23.20079 -22.38050 -21.81774 -21.54027 -21.10563 -19.98778 -18.49350 -18.38502 -17.45074 -16.73924 -16.65073 -16.28211 -15.88003 -15.41606 -15.28775 -15.08501 -15.02849 -14.95129 -14.65349 -14.58219 -14.38220 -14.11551 -13.83968 -13.60368 -13.38398 -12.98861 -12.85280 -12.76166 -12.62906 -12.56780 -12.47744 -12.26109 -12.09324 -12.02239 -11.95892 -11.82022 -11.68134 -11.64672 -11.47136 -11.28124 -11.24028 -10.93800 -10.63123 -10.55383 -10.52513 -10.07050 -8.62756 -8.29083 -5.54383 1.30718 1.35385 1.44220 1.69597 2.19456 2.44131 2.93275 3.44193 3.60901 3.75563 3.83647 3.89899 4.04767 4.05962 4.14606 4.17249 4.24020 4.27258 4.31784 4.34662 4.38658 4.43321 4.50267 4.65531 4.70875 4.79434 4.85354 4.86600 4.97096 4.97591 5.01390 5.01834 5.04101 5.06099 5.08523 5.15708 5.16471 5.20673 5.25821 5.27662 5.29506 5.38030 5.42967 5.51144 5.52699 5.55004 5.62349 5.66692 5.68471 5.91903 6.24419 6.64228 7.00271 7.37514 7.65618 8.14272 8.91195 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.003910 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.206885 B = 7158.841039 C = 8087.124588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.043 0.957 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.135 3.865 7 H 0.047 0.953 8 N -0.711 5.711 9 C 0.501 3.499 10 O -0.591 6.591 11 C -0.114 4.114 12 C -0.103 4.103 13 C -0.120 4.120 14 C -0.131 4.131 15 C -0.116 4.116 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.101 4.101 19 C 0.144 3.856 20 N -0.605 5.605 21 C -0.260 4.260 22 H 0.044 0.956 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.283 1.283 27 H -0.307 1.307 28 H -0.243 1.243 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.414 0.586 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.036 0.964 51 H 0.059 0.941 52 H 0.032 0.968 53 H 0.018 0.982 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 3.242 -15.492 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.061 0.939 4 C -0.159 4.159 5 C -0.144 4.144 6 C 0.028 3.972 7 H 0.065 0.935 8 N -0.363 5.363 9 C 0.289 3.711 10 O -0.471 6.471 11 C -0.135 4.135 12 C -0.141 4.141 13 C -0.157 4.157 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.155 4.155 18 C -0.139 4.139 19 C 0.018 3.982 20 N -0.331 5.331 21 C -0.390 4.390 22 H 0.061 0.939 23 C -0.204 4.204 24 N -0.571 5.571 25 Si 0.731 3.269 26 H -0.210 1.210 27 H -0.234 1.234 28 H -0.167 1.167 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.055 0.945 51 H 0.078 0.922 52 H 0.050 0.950 53 H 0.036 0.964 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.087 2.615 -14.970 25.992 hybrid contribution -0.254 0.376 1.394 1.466 sum 20.833 2.990 -13.576 25.045 Atomic orbital electron populations 1.21713 0.95116 1.00722 1.01067 1.20947 0.94140 0.93986 0.86193 0.93944 1.21947 0.94851 1.00673 0.98402 1.21649 0.96734 1.00350 0.95629 1.21359 0.79896 0.98951 0.96990 0.93511 1.45960 1.07164 1.27603 1.55552 1.21624 0.92291 0.80345 0.76835 1.90742 1.65399 1.44207 1.46771 1.21955 0.88484 1.02522 1.00495 1.21626 0.97381 1.02682 0.92437 1.21833 0.94001 0.99025 1.00812 1.21858 1.00562 0.98012 0.96379 1.21704 0.97560 1.00439 0.95588 1.21865 0.99600 0.96195 0.99408 1.21844 0.94515 0.97321 1.01836 1.21427 0.97185 0.96284 0.99001 1.21490 0.84746 0.96082 0.95916 1.44433 1.01954 1.66111 1.20564 1.18477 1.01425 1.33736 0.85347 0.93893 1.26148 0.98889 0.99068 0.96312 1.70208 1.50347 1.33160 1.03417 0.86366 0.79659 0.83365 0.77508 1.21031 1.23434 1.16723 0.94356 0.89955 0.94673 0.93646 0.88152 0.89776 0.89432 0.74830 0.85269 0.91877 0.90459 0.90299 0.90439 0.91773 0.90717 0.91774 0.90686 0.92639 0.92051 0.92133 0.88997 0.94502 0.92227 0.94990 0.96350 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.07 71.98 0.58 -4.12 16 2 C 0.15 5.66 3.50 44.98 0.16 5.82 16 3 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -3.48 5.37 30.67 0.16 -3.32 16 5 C -0.11 -2.76 5.35 30.62 0.16 -2.59 16 6 C 0.13 4.86 2.60 45.07 0.12 4.98 16 7 H 0.05 2.09 7.58 -2.38 -0.02 2.08 16 8 N -0.71 -20.48 4.84 -442.16 -2.14 -22.62 16 9 C 0.50 16.70 7.11 87.66 0.62 17.32 16 10 O -0.59 -27.38 15.35 -3.04 -0.05 -27.43 16 11 C -0.11 -2.60 1.93 -11.53 -0.02 -2.63 16 12 C -0.10 -1.63 5.04 30.60 0.15 -1.48 16 13 C -0.12 -1.32 5.48 30.59 0.17 -1.15 16 14 C -0.13 -1.46 5.47 30.59 0.17 -1.29 16 15 C -0.12 -1.38 5.59 30.60 0.17 -1.21 16 16 C -0.13 -2.21 5.47 30.59 0.17 -2.05 16 17 C -0.12 -2.08 5.48 30.59 0.17 -1.92 16 18 C -0.10 -2.51 4.60 30.60 0.14 -2.37 16 19 C 0.14 6.57 4.17 86.36 0.36 6.93 16 20 N -0.61 -29.28 2.47 -675.24 -1.67 -30.95 16 21 C -0.26 -15.28 8.42 84.03 0.71 -14.57 16 22 H 0.04 2.76 6.83 -2.91 -0.02 2.74 16 23 C -0.01 -0.34 4.82 84.86 0.41 0.07 16 24 N -0.93 -61.27 13.97 21.65 0.30 -60.97 16 25 Si 0.90 47.16 27.40 68.60 1.88 49.04 16 26 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 27 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 28 H -0.24 -11.71 5.24 99.48 0.52 -11.19 16 29 H 0.04 1.56 7.68 -2.38 -0.02 1.54 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.40 7.42 -2.39 -0.02 1.38 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 8.15 7.94 -92.71 -0.74 7.41 16 37 H 0.13 2.63 2.83 -2.38 -0.01 2.63 16 38 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 39 H 0.08 1.04 7.20 -2.39 -0.02 1.02 16 40 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.08 0.84 4.69 -2.39 -0.01 0.83 16 42 H 0.06 0.83 5.47 -2.39 -0.01 0.82 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.75 7.47 -2.39 -0.02 0.74 16 46 H 0.06 1.11 5.47 -2.38 -0.01 1.10 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.26 4.69 -2.39 -0.01 1.25 16 50 H 0.04 1.19 7.52 -2.39 -0.02 1.17 16 51 H 0.06 1.51 7.82 -2.39 -0.02 1.50 16 52 H 0.03 1.39 6.71 -2.39 -0.02 1.37 16 53 H 0.02 1.00 7.02 -2.39 -0.02 0.98 16 54 H 0.26 16.36 8.31 -92.70 -0.77 15.59 16 Total: -1.00 -79.57 381.99 2.69 -76.88 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.04 Total: 19.62 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.40 Total: -3.58 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -3.50 Total: -114.53 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.88 Total: 49.04 kcal Total: -79.57 2.69 -76.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673751.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.676 kcal (2) G-P(sol) polarization free energy of solvation -79.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds