Wall clock time and date at job start Tue Mar 31 2020 15:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58978 * 2 1 4 4 C 1.53199 * 109.58439 * 120.28238 * 2 1 3 5 5 C 1.53036 * 109.31267 * 174.42021 * 4 2 1 6 6 C 1.53040 * 109.53877 * 298.63068 * 5 4 2 7 7 H 1.09001 * 109.50048 * 181.34662 * 6 5 4 8 8 N 1.46491 * 109.50057 * 301.41876 * 6 5 4 9 9 C 1.34779 * 119.99999 * 204.93273 * 8 6 5 10 10 O 1.21286 * 119.99993 * 359.97438 * 9 8 6 11 11 C 1.50707 * 120.00256 * 179.97438 * 9 8 6 12 12 C 1.52988 * 109.46437 * 300.03313 * 11 9 8 13 13 C 1.53013 * 109.46126 * 195.97863 * 12 11 9 14 14 C 1.53015 * 109.46663 * 284.05268 * 13 12 11 15 15 C 1.52987 * 109.46122 * 75.94064 * 14 13 12 16 16 C 1.52985 * 109.50542 * 44.01565 * 15 14 13 17 17 C 1.53005 * 109.48219 * 247.07014 * 16 15 14 18 18 C 1.52979 * 109.46776 * 180.02562 * 11 9 8 19 19 C 1.53200 * 109.33725 * 61.38473 * 6 5 4 20 20 N 1.46929 * 109.58819 * 239.56798 * 2 1 3 21 21 C 1.36937 * 120.62764 * 6.58880 * 20 2 1 22 22 H 1.08006 * 119.99993 * 330.16067 * 21 20 2 23 23 C 1.38815 * 120.00011 * 150.16940 * 21 20 2 24 24 N 1.31617 * 119.99731 * 344.50675 * 23 21 20 25 25 Si 1.86800 * 119.99946 * 164.50606 * 23 21 20 26 26 H 1.48497 * 109.47090 * 60.00335 * 25 23 21 27 27 H 1.48507 * 109.46752 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47225 * 300.00101 * 25 23 21 29 29 H 1.08999 * 109.47126 * 299.72137 * 1 2 3 30 30 H 1.09005 * 109.46593 * 59.71727 * 1 2 3 31 31 H 1.08997 * 109.47413 * 179.71338 * 1 2 3 32 32 H 1.09003 * 109.49350 * 54.46591 * 4 2 1 33 33 H 1.08996 * 109.52188 * 294.39118 * 4 2 1 34 34 H 1.09001 * 109.46017 * 178.61348 * 5 4 2 35 35 H 1.08998 * 109.45219 * 58.64859 * 5 4 2 36 36 H 0.96999 * 120.00642 * 24.93201 * 8 6 5 37 37 H 1.08993 * 109.46325 * 60.01222 * 11 9 8 38 38 H 1.09006 * 109.47731 * 315.98047 * 12 11 9 39 39 H 1.09010 * 109.47529 * 75.98106 * 12 11 9 40 40 H 1.09002 * 109.47391 * 164.04725 * 13 12 11 41 41 H 1.09006 * 109.46940 * 44.04601 * 13 12 11 42 42 H 1.08994 * 109.46939 * 315.94452 * 14 13 12 43 43 H 1.09005 * 109.46901 * 195.93791 * 14 13 12 44 44 H 1.09005 * 109.46301 * 164.02048 * 15 14 13 45 45 H 1.08998 * 109.46986 * 284.00244 * 15 14 13 46 46 H 1.09004 * 109.46747 * 7.06600 * 16 15 14 47 47 H 1.08994 * 109.47204 * 127.06101 * 16 15 14 48 48 H 1.08997 * 109.47915 * 195.94261 * 17 16 15 49 49 H 1.09007 * 109.47094 * 315.95231 * 17 16 15 50 50 H 1.09000 * 109.47572 * 112.94376 * 18 11 9 51 51 H 1.09007 * 109.47198 * 352.94956 * 18 11 9 52 52 H 1.08999 * 109.58474 * 65.13254 * 19 6 5 53 53 H 1.08993 * 109.58627 * 185.55731 * 19 6 5 54 54 H 0.97005 * 119.99790 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5674 -0.8466 1.1713 6 6 3.9568 -1.6660 -0.0612 7 1 5.0411 -1.7705 -0.1010 8 7 3.3404 -2.9925 0.0188 9 6 3.8961 -4.0342 -0.6313 10 8 4.9064 -3.8732 -1.2829 11 6 3.2623 -5.3990 -0.5486 12 6 3.2198 -5.8537 0.9115 13 6 2.9578 -7.3602 0.9688 14 6 1.4814 -7.6326 0.6729 15 6 1.2262 -7.4823 -0.8280 16 6 2.3469 -8.1720 -1.6083 17 6 3.1694 -7.1209 -2.3565 18 6 4.0853 -6.3938 -1.3692 19 6 3.4657 -0.9491 -1.3229 20 7 2.0226 -0.7011 -1.1935 21 6 1.1537 -1.1163 -2.1671 22 1 0.1398 -1.3833 -1.9079 23 6 1.5760 -1.1940 -3.4872 24 7 2.6866 -0.5936 -3.8592 25 14 0.5681 -2.1506 -4.7355 26 1 -0.7924 -1.5627 -4.8282 27 1 1.2288 -2.0801 -6.0636 28 1 0.4664 -3.5688 -4.3073 29 1 -0.3633 0.5095 0.8925 30 1 -0.3633 0.5183 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6028 -1.7237 1.2936 33 1 1.7659 -0.1646 2.1373 34 1 3.9377 -1.3423 2.0687 35 1 4.0060 0.1487 1.0991 36 1 2.5322 -3.1213 0.5395 37 1 2.2478 -5.3528 -0.9443 38 1 4.1744 -5.6325 1.3890 39 1 2.4215 -5.3259 1.4334 40 1 3.2044 -7.7343 1.9624 41 1 3.5762 -7.8650 0.2266 42 1 0.8639 -6.9201 1.2197 43 1 1.2295 -8.6463 0.9847 44 1 0.2709 -7.9418 -1.0818 45 1 1.2006 -6.4241 -1.0880 46 1 2.9921 -8.7127 -0.9159 47 1 1.9144 -8.8715 -2.3235 48 1 3.7737 -7.6090 -3.1211 49 1 2.4985 -6.4022 -2.8274 50 1 4.5492 -7.1197 -0.7013 51 1 4.8599 -5.8587 -1.9185 52 1 3.9910 -0.0004 -1.4319 53 1 3.6530 -1.5753 -2.1952 54 1 2.9820 -0.6482 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673752.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:14 Heat of formation + Delta-G solvation = -48.620603 kcal Electronic energy + Delta-G solvation = -30542.826996 eV Core-core repulsion = 26899.583155 eV Total energy + Delta-G solvation = -3643.243841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.48398 -39.94795 -38.72945 -35.76605 -34.52475 -33.96670 -33.68812 -32.00228 -31.70286 -28.28362 -27.62424 -26.79902 -26.57912 -23.93428 -23.29484 -22.83381 -22.03660 -20.88630 -20.35301 -20.21741 -18.48247 -18.13499 -17.18681 -16.67114 -16.37633 -16.09270 -15.76617 -15.58133 -15.36110 -15.03780 -15.00865 -14.67393 -14.58279 -14.40088 -14.18327 -13.98141 -13.76241 -13.50254 -12.97287 -12.94418 -12.85323 -12.60930 -12.57243 -12.50432 -12.41475 -12.14109 -12.09962 -12.01114 -11.95771 -11.69902 -11.65853 -11.57017 -11.24424 -11.19623 -11.05540 -10.93463 -10.78519 -10.54507 -10.39022 -9.86744 -8.56289 -7.82134 -5.27622 1.39005 1.42163 1.47161 1.83919 2.45406 2.50032 3.33593 3.63547 3.64832 3.76445 3.90673 4.04505 4.10996 4.12907 4.17716 4.21076 4.23987 4.32698 4.33807 4.37634 4.50368 4.56275 4.65955 4.74944 4.81001 4.83188 4.93185 4.96530 4.97325 5.00273 5.03241 5.05570 5.10198 5.11721 5.14730 5.17937 5.19914 5.27406 5.33240 5.36723 5.41603 5.46243 5.50997 5.57309 5.61263 5.62187 5.70587 5.71329 5.74305 5.82237 6.44292 6.78562 7.18757 7.48867 7.93349 8.44799 9.22959 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005408 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.863729 B = 5176.099480 C = 6203.227629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.127 3.873 7 H 0.059 0.941 8 N -0.690 5.690 9 C 0.505 3.495 10 O -0.596 6.596 11 C -0.105 4.105 12 C -0.100 4.100 13 C -0.133 4.133 14 C -0.113 4.113 15 C -0.134 4.134 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.174 3.826 20 N -0.592 5.592 21 C -0.235 4.235 22 H 0.076 0.924 23 C -0.055 4.055 24 N -0.938 5.938 25 Si 0.948 3.052 26 H -0.271 1.271 27 H -0.305 1.305 28 H -0.280 1.280 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.094 0.906 51 H 0.050 0.950 52 H -0.009 1.009 53 H 0.044 0.956 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -13.479 15.389 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.020 3.980 7 H 0.077 0.923 8 N -0.340 5.340 9 C 0.293 3.707 10 O -0.477 6.477 11 C -0.126 4.126 12 C -0.137 4.137 13 C -0.170 4.170 14 C -0.150 4.150 15 C -0.172 4.172 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.154 4.154 19 C 0.047 3.953 20 N -0.316 5.316 21 C -0.366 4.366 22 H 0.094 0.906 23 C -0.249 4.249 24 N -0.585 5.585 25 Si 0.777 3.223 26 H -0.196 1.196 27 H -0.232 1.232 28 H -0.206 1.206 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.242 0.758 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.056 0.944 50 H 0.113 0.887 51 H 0.068 0.932 52 H 0.009 0.991 53 H 0.062 0.938 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.067 -13.316 14.800 20.015 hybrid contribution -0.375 0.303 -1.688 1.756 sum -2.442 -13.013 13.112 18.633 Atomic orbital electron populations 1.21717 0.94627 1.01396 1.00746 1.20778 0.94215 0.93101 0.87131 0.97125 1.21944 0.94609 1.01095 0.97992 1.21646 0.97365 0.99704 0.96012 1.21428 0.96056 0.83059 0.97422 0.92279 1.45730 1.29547 1.07654 1.51066 1.21320 0.83886 0.87920 0.77555 1.90607 1.28109 1.85966 1.43066 1.21653 1.00750 0.90198 0.99964 1.21575 1.02355 0.97868 0.91932 1.22053 0.97434 0.94464 1.03041 1.21604 0.96207 1.02236 0.95000 1.21891 0.98496 1.00443 0.96333 1.21790 0.97374 0.97231 0.99197 1.21707 0.98151 0.98075 0.97817 1.21784 0.97953 0.97502 0.98176 1.20825 0.84266 0.94991 0.95253 1.44233 1.02086 1.65322 1.19975 1.19366 0.95381 1.35542 0.86302 0.90601 1.25750 0.98939 1.01244 0.99005 1.70166 1.26068 1.46100 1.16147 0.85624 0.78704 0.79444 0.78519 1.19613 1.23217 1.20590 0.90586 0.94797 0.92860 0.91728 0.89187 0.89618 0.91244 0.75781 0.88208 0.92041 0.90372 0.90305 0.89578 0.91663 0.90780 0.91839 0.92943 0.89381 0.91837 0.91819 0.94355 0.88735 0.93176 0.99056 0.93757 0.94953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.95 71.98 0.57 -3.70 16 2 C 0.15 5.77 3.50 44.98 0.16 5.93 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -3.28 5.21 30.67 0.16 -3.12 16 5 C -0.11 -3.19 5.59 30.62 0.17 -3.02 16 6 C 0.13 4.92 2.81 45.07 0.13 5.04 16 7 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 8 N -0.69 -24.21 4.82 -442.15 -2.13 -26.34 16 9 C 0.51 19.28 7.05 87.66 0.62 19.90 16 10 O -0.60 -28.41 14.80 -3.05 -0.05 -28.46 16 11 C -0.10 -3.00 2.08 -11.55 -0.02 -3.02 16 12 C -0.10 -2.01 4.87 30.59 0.15 -1.86 16 13 C -0.13 -2.08 5.33 30.60 0.16 -1.92 16 14 C -0.11 -1.72 5.71 30.59 0.17 -1.55 16 15 C -0.13 -2.60 5.48 30.58 0.17 -2.43 16 16 C -0.12 -2.28 5.47 30.59 0.17 -2.12 16 17 C -0.12 -3.10 5.60 30.61 0.17 -2.93 16 18 C -0.12 -3.30 5.07 30.60 0.16 -3.14 16 19 C 0.17 8.75 4.89 86.35 0.42 9.17 16 20 N -0.59 -28.43 2.90 -675.02 -1.96 -30.39 16 21 C -0.24 -12.53 8.58 84.03 0.72 -11.81 16 22 H 0.08 3.85 6.23 -2.91 -0.02 3.83 16 23 C -0.05 -3.14 4.94 84.86 0.42 -2.72 16 24 N -0.94 -58.77 11.23 21.65 0.24 -58.53 16 25 Si 0.95 46.72 29.58 68.60 2.03 48.75 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 28 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.29 7.67 -2.38 -0.02 1.28 16 31 H 0.05 1.76 7.40 -2.39 -0.02 1.74 16 32 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.41 12.09 6.60 -92.71 -0.61 11.48 16 37 H 0.10 3.00 4.69 -2.39 -0.01 2.99 16 38 H 0.06 1.29 8.03 -2.38 -0.02 1.27 16 39 H 0.08 1.39 7.75 -2.38 -0.02 1.37 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.40 2.83 -2.38 -0.01 1.39 16 42 H 0.06 0.97 7.82 -2.39 -0.02 0.96 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.05 1.26 4.69 -2.39 -0.01 1.25 16 46 H 0.09 1.41 5.47 -2.38 -0.01 1.40 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.04 1.18 7.47 -2.38 -0.02 1.17 16 50 H 0.09 2.16 5.47 -2.39 -0.01 2.15 16 51 H 0.05 1.81 6.30 -2.38 -0.02 1.80 16 52 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 53 H 0.04 2.68 6.15 -2.39 -0.01 2.67 16 54 H 0.24 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -72.05 381.20 2.91 -69.15 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.28 Total: 29.13 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.49 Total: -3.31 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.85 Total: -115.26 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -72.05 2.91 -69.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673752.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.525 kcal (2) G-P(sol) polarization free energy of solvation -72.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds