Wall clock time and date at job start Tue Mar 31 2020 15:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58365 * 2 1 4 4 C 1.53194 * 109.58291 * 120.42358 * 2 1 3 5 5 C 1.53038 * 109.31270 * 174.42644 * 4 2 1 6 6 C 1.53041 * 109.53935 * 298.63539 * 5 4 2 7 7 H 1.09003 * 109.49930 * 301.41593 * 6 5 4 8 8 N 1.46498 * 109.50006 * 181.31514 * 6 5 4 9 9 C 1.34777 * 119.99927 * 155.16134 * 8 6 5 10 10 O 1.21286 * 119.99962 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00031 * 179.97438 * 9 8 6 12 12 C 1.53017 * 109.47214 * 299.99883 * 11 9 8 13 13 C 1.52993 * 109.45877 * 164.04565 * 12 11 9 14 14 C 1.52981 * 109.50994 * 315.98964 * 13 12 11 15 15 C 1.53001 * 109.46951 * 112.93795 * 14 13 12 16 16 C 1.53007 * 109.43402 * 284.04378 * 15 14 13 17 17 C 1.52983 * 109.48576 * 75.95790 * 16 15 14 18 18 C 1.52998 * 109.50655 * 247.06482 * 17 16 15 19 19 C 1.53201 * 109.31100 * 61.36117 * 6 5 4 20 20 N 1.46919 * 109.59150 * 239.71288 * 2 1 3 21 21 C 1.36944 * 120.62961 * 6.63130 * 20 2 1 22 22 H 1.07998 * 119.99686 * 331.52058 * 21 20 2 23 23 C 1.38814 * 119.99903 * 151.52675 * 21 20 2 24 24 N 1.31617 * 119.99628 * 160.53761 * 23 21 20 25 25 Si 1.86793 * 120.00010 * 340.53413 * 23 21 20 26 26 H 1.48497 * 109.47260 * 94.84153 * 25 23 21 27 27 H 1.48503 * 109.47116 * 214.84123 * 25 23 21 28 28 H 1.48504 * 109.47419 * 334.83841 * 25 23 21 29 29 H 1.09007 * 109.47253 * 180.28137 * 1 2 3 30 30 H 1.09000 * 109.47392 * 300.28523 * 1 2 3 31 31 H 1.09008 * 109.47045 * 60.28905 * 1 2 3 32 32 H 1.09005 * 109.49884 * 294.37872 * 4 2 1 33 33 H 1.09004 * 109.49618 * 54.47468 * 4 2 1 34 34 H 1.08998 * 109.46607 * 178.61699 * 5 4 2 35 35 H 1.09000 * 109.45961 * 58.65469 * 5 4 2 36 36 H 0.96994 * 120.00443 * 335.16197 * 8 6 5 37 37 H 1.08997 * 109.47280 * 60.00161 * 11 9 8 38 38 H 1.08995 * 109.47673 * 284.04538 * 12 11 9 39 39 H 1.08999 * 109.46628 * 44.05182 * 12 11 9 40 40 H 1.08998 * 109.46177 * 195.98256 * 13 12 11 41 41 H 1.08998 * 109.45937 * 75.99744 * 13 12 11 42 42 H 1.08998 * 109.47331 * 352.93761 * 14 13 12 43 43 H 1.08997 * 109.47336 * 232.93966 * 14 13 12 44 44 H 1.09007 * 109.48086 * 164.05401 * 15 14 13 45 45 H 1.09002 * 109.48174 * 44.02858 * 15 14 13 46 46 H 1.09002 * 109.46749 * 315.95573 * 16 15 14 47 47 H 1.08996 * 109.46976 * 195.96854 * 16 15 14 48 48 H 1.09004 * 109.46212 * 127.05882 * 17 16 15 49 49 H 1.08995 * 109.46089 * 7.07434 * 17 16 15 50 50 H 1.08992 * 109.47651 * 284.02233 * 18 17 16 51 51 H 1.09000 * 109.47587 * 164.00905 * 18 17 16 52 52 H 1.09001 * 109.57877 * 65.15915 * 19 6 5 53 53 H 1.08997 * 109.58341 * 185.57983 * 19 6 5 54 54 H 0.96999 * 119.99703 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 3.5674 -0.8493 1.1693 6 6 3.9569 -1.6656 -0.0653 7 1 3.4983 -2.6528 -0.0083 8 7 5.4143 -1.8051 -0.1194 9 6 5.9678 -2.8453 -0.7735 10 8 5.2594 -3.6657 -1.3178 11 6 7.4669 -2.9885 -0.8297 12 6 8.0716 -1.7592 -1.5114 13 6 9.5730 -1.7033 -1.2229 14 6 9.8211 -2.0112 0.2549 15 6 10.5601 -3.3450 0.3809 16 6 9.5798 -4.4949 0.1398 17 6 9.2901 -4.6130 -1.3577 18 6 7.8299 -4.2436 -1.6262 19 6 3.4651 -0.9452 -1.3247 20 7 2.0226 -0.6981 -1.1952 21 6 1.1538 -1.1100 -2.1704 22 1 0.1336 -1.3562 -1.9157 23 6 1.5846 -1.2113 -3.4861 24 7 0.9112 -1.9479 -4.3441 25 14 3.1199 -0.3021 -4.0388 26 1 4.2910 -1.2112 -3.9544 27 1 2.9472 0.1538 -5.4415 28 1 3.3421 0.8742 -3.1599 29 1 -0.3634 -1.0277 0.0050 30 1 -0.3634 0.5182 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 1.7658 -0.1694 2.1367 33 1 1.6028 -1.7269 1.2892 34 1 3.9377 -1.3473 2.0654 35 1 4.0060 0.1461 1.0997 36 1 5.9808 -1.1488 0.3156 37 1 7.8620 -3.0738 0.1826 38 1 7.9105 -1.8243 -2.5874 39 1 7.5938 -0.8584 -1.1262 40 1 9.9506 -0.7075 -1.4547 41 1 10.0888 -2.4399 -1.8389 42 1 8.8670 -2.0736 0.7783 43 1 10.4256 -1.2180 0.6949 44 1 10.9841 -3.4326 1.3813 45 1 11.3601 -3.3886 -0.3582 46 1 8.6508 -4.2985 0.6752 47 1 10.0167 -5.4262 0.5000 48 1 9.4713 -5.6375 -1.6829 49 1 9.9432 -3.9361 -1.9084 50 1 7.1846 -5.0671 -1.3206 51 1 7.6936 -4.0507 -2.6903 52 1 3.9904 0.0038 -1.4314 53 1 3.6519 -1.5690 -2.1988 54 1 1.2120 -2.0184 -5.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673753.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:19 Heat of formation + Delta-G solvation = -50.155567 kcal Electronic energy + Delta-G solvation = -29803.350949 eV Core-core repulsion = 26160.040547 eV Total energy + Delta-G solvation = -3643.310402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.63601 -40.05116 -38.97309 -36.14183 -34.71172 -34.06615 -33.70314 -32.61924 -32.12177 -28.53927 -27.61000 -26.86979 -26.43791 -24.52479 -23.24971 -22.40701 -21.90664 -21.56502 -21.07465 -20.02202 -18.61958 -18.40586 -17.59183 -16.98160 -16.54114 -16.40203 -15.95976 -15.54327 -15.28439 -15.13547 -15.03526 -14.92236 -14.80030 -14.66170 -14.32185 -14.15502 -13.87323 -13.66644 -13.46174 -13.05270 -12.92309 -12.73363 -12.60000 -12.55551 -12.50571 -12.30679 -12.09814 -12.05002 -11.98930 -11.78404 -11.70747 -11.67191 -11.42461 -11.33008 -11.27726 -10.96012 -10.79394 -10.68133 -10.55685 -10.14169 -8.89671 -8.19418 -5.50083 1.22747 1.26346 1.36325 1.62119 2.15296 2.37595 3.04214 3.31406 3.55344 3.71174 3.78524 3.84023 4.00674 4.02630 4.09936 4.15659 4.20536 4.23519 4.25584 4.31047 4.35146 4.36122 4.41032 4.57473 4.65683 4.76024 4.81274 4.84071 4.85411 4.91281 4.96102 4.98116 4.99223 5.01054 5.06840 5.11435 5.13760 5.15745 5.22219 5.24785 5.27468 5.38451 5.41588 5.47657 5.48588 5.49537 5.62246 5.63100 5.64611 5.88343 6.15376 6.58365 6.90618 7.31585 7.62849 8.01527 9.00330 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.003951 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.267884 B = 7085.747429 C = 7909.786652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 H 0.047 0.953 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.135 3.865 7 H 0.050 0.950 8 N -0.711 5.711 9 C 0.499 3.501 10 O -0.591 6.591 11 C -0.111 4.111 12 C -0.112 4.112 13 C -0.120 4.120 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.102 4.102 19 C 0.122 3.878 20 N -0.614 5.614 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.037 4.037 24 N -0.958 5.958 25 Si 0.940 3.060 26 H -0.303 1.303 27 H -0.310 1.310 28 H -0.250 1.250 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.416 0.584 37 H 0.145 0.855 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.043 0.957 52 H 0.034 0.966 53 H 0.030 0.970 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.056 3.278 16.559 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.065 0.935 4 C -0.160 4.160 5 C -0.144 4.144 6 C 0.028 3.972 7 H 0.068 0.932 8 N -0.364 5.364 9 C 0.287 3.713 10 O -0.471 6.471 11 C -0.131 4.131 12 C -0.150 4.150 13 C -0.157 4.157 14 C -0.165 4.165 15 C -0.154 4.154 16 C -0.166 4.166 17 C -0.156 4.156 18 C -0.140 4.140 19 C -0.004 4.004 20 N -0.340 5.340 21 C -0.366 4.366 22 H 0.086 0.914 23 C -0.231 4.231 24 N -0.605 5.605 25 Si 0.771 3.229 26 H -0.231 1.231 27 H -0.239 1.239 28 H -0.174 1.174 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.253 0.747 37 H 0.162 0.838 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.052 0.948 53 H 0.048 0.952 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.509 2.689 16.055 26.974 hybrid contribution 0.087 0.021 -1.417 1.420 sum 21.596 2.710 14.638 26.230 Atomic orbital electron populations 1.21767 0.94957 1.00880 1.01353 1.20890 0.94201 0.94084 0.85530 0.93514 1.21975 0.94774 1.00839 0.98405 1.21668 0.96832 1.00410 0.95495 1.21348 0.79930 0.99139 0.96767 0.93178 1.45961 1.07193 1.27646 1.55570 1.21685 0.92401 0.80364 0.76848 1.90739 1.65440 1.44277 1.46669 1.21951 0.88194 0.98007 1.04926 1.21678 0.97898 0.95721 0.99713 1.21835 0.93431 1.02711 0.97697 1.21844 1.01107 0.97827 0.95756 1.21713 0.97600 0.93695 1.02356 1.21840 0.99840 0.99531 0.95406 1.21852 0.94323 1.01831 0.97643 1.21437 0.97787 0.96012 0.98803 1.21597 0.85079 0.96676 0.97059 1.44585 1.01719 1.66476 1.21205 1.18942 0.95072 1.35997 0.86558 0.91400 1.25885 1.00467 1.00291 0.96504 1.69946 1.43663 1.41880 1.05034 0.85973 0.80412 0.80147 0.76340 1.23123 1.23880 1.17395 0.94510 0.89611 0.94300 0.87798 0.93463 0.89141 0.89597 0.74658 0.83772 0.93471 0.90880 0.90799 0.90533 0.91129 0.90616 0.91063 0.91192 0.91823 0.91439 0.91891 0.89787 0.93380 0.93779 0.94798 0.95197 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.94 71.98 0.57 -4.16 16 2 C 0.16 5.77 3.50 44.98 0.16 5.93 16 3 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -3.42 5.37 30.67 0.16 -3.26 16 5 C -0.11 -2.71 5.35 30.62 0.16 -2.55 16 6 C 0.13 4.87 2.60 45.07 0.12 4.98 16 7 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 8 N -0.71 -20.70 4.84 -442.14 -2.14 -22.84 16 9 C 0.50 16.95 7.11 87.66 0.62 17.57 16 10 O -0.59 -27.77 15.35 -3.05 -0.05 -27.82 16 11 C -0.11 -2.58 1.93 -11.53 -0.02 -2.60 16 12 C -0.11 -2.25 5.04 30.60 0.15 -2.10 16 13 C -0.12 -1.61 5.48 30.59 0.17 -1.44 16 14 C -0.13 -1.34 5.47 30.59 0.17 -1.17 16 15 C -0.12 -1.18 5.59 30.60 0.17 -1.01 16 16 C -0.13 -1.76 5.47 30.59 0.17 -1.59 16 17 C -0.12 -2.06 5.48 30.59 0.17 -1.89 16 18 C -0.10 -2.61 4.60 30.60 0.14 -2.47 16 19 C 0.12 5.58 3.76 86.37 0.32 5.91 16 20 N -0.61 -29.74 2.76 -675.24 -1.86 -31.60 16 21 C -0.24 -13.92 9.06 84.03 0.76 -13.15 16 22 H 0.07 4.26 6.37 -2.91 -0.02 4.24 16 23 C -0.04 -2.34 5.24 84.86 0.45 -1.90 16 24 N -0.96 -64.57 13.97 21.65 0.30 -64.27 16 25 Si 0.94 51.17 24.35 68.60 1.67 52.84 16 26 H -0.30 -16.97 6.72 99.48 0.67 -16.30 16 27 H -0.31 -16.88 7.11 99.48 0.71 -16.17 16 28 H -0.25 -12.48 6.44 99.48 0.64 -11.84 16 29 H 0.04 1.44 7.45 -2.38 -0.02 1.42 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.56 7.61 -2.38 -0.02 1.54 16 32 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.42 8.15 7.94 -92.71 -0.74 7.41 16 37 H 0.15 2.54 2.83 -2.39 -0.01 2.53 16 38 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 39 H 0.07 1.35 7.20 -2.39 -0.02 1.33 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.03 4.69 -2.39 -0.01 1.02 16 42 H 0.07 0.75 5.47 -2.39 -0.01 0.74 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.07 0.66 7.47 -2.39 -0.02 0.65 16 46 H 0.06 0.97 5.47 -2.39 -0.01 0.96 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.08 1.27 4.69 -2.39 -0.01 1.26 16 50 H 0.05 1.46 7.52 -2.39 -0.02 1.44 16 51 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 52 H 0.03 1.47 6.95 -2.39 -0.02 1.45 16 53 H 0.03 1.66 4.61 -2.39 -0.01 1.65 16 54 H 0.26 16.66 8.31 -92.71 -0.77 15.89 16 Total: -1.00 -82.25 377.92 2.42 -79.83 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.05 Total: 18.75 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 4.44 Total: -4.90 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -3.70 Total: -118.71 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 1.67 Total: 52.84 kcal Total: -82.25 2.42 -79.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673753.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.676 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds