Wall clock time and date at job start Tue Mar 31 2020 15:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.57976 * 2 1 4 4 C 1.53195 * 109.70266 * 239.64547 * 2 1 3 5 5 C 1.53047 * 109.31100 * 185.50342 * 4 2 1 6 6 C 1.53038 * 109.53354 * 61.36415 * 5 4 2 7 7 H 1.09001 * 109.52248 * 178.66053 * 6 5 4 8 8 N 1.46502 * 109.49895 * 58.59023 * 6 5 4 9 9 C 1.34774 * 120.00393 * 155.15682 * 8 6 5 10 10 O 1.21279 * 119.99747 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00092 * 179.97438 * 9 8 6 12 12 C 1.52991 * 109.46900 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.49681 * 127.06797 * 12 11 9 14 14 C 1.53006 * 109.46750 * 44.01561 * 13 12 11 15 15 C 1.53010 * 109.46643 * 75.94052 * 14 13 12 16 16 C 1.52995 * 109.46211 * 284.04929 * 15 14 13 17 17 C 1.52982 * 109.50170 * 315.99277 * 16 15 14 18 18 C 1.53000 * 109.47001 * 59.99334 * 11 9 8 19 19 C 1.53186 * 109.31692 * 298.63485 * 6 5 4 20 20 N 1.46921 * 109.58758 * 120.28280 * 2 1 3 21 21 C 1.36936 * 120.63289 * 353.52308 * 20 2 1 22 22 H 1.08002 * 120.00184 * 29.03656 * 21 20 2 23 23 C 1.38814 * 120.00001 * 209.04065 * 21 20 2 24 24 N 1.31618 * 120.00123 * 15.00615 * 23 21 20 25 25 Si 1.86802 * 120.00041 * 195.00483 * 23 21 20 26 26 H 1.48497 * 109.47105 * 90.00115 * 25 23 21 27 27 H 1.48498 * 109.46899 * 210.00317 * 25 23 21 28 28 H 1.48500 * 109.46864 * 329.99741 * 25 23 21 29 29 H 1.08994 * 109.47266 * 299.70928 * 1 2 3 30 30 H 1.09001 * 109.47285 * 59.71816 * 1 2 3 31 31 H 1.09007 * 109.46497 * 179.71374 * 1 2 3 32 32 H 1.08997 * 109.49809 * 305.45525 * 4 2 1 33 33 H 1.09003 * 109.49854 * 65.55773 * 4 2 1 34 34 H 1.08994 * 109.45854 * 301.34705 * 5 4 2 35 35 H 1.08999 * 109.45875 * 181.38410 * 5 4 2 36 36 H 0.97003 * 119.99527 * 335.15940 * 8 6 5 37 37 H 1.08997 * 109.46996 * 299.99939 * 11 9 8 38 38 H 1.08997 * 109.46514 * 7.05989 * 12 11 9 39 39 H 1.08998 * 109.46238 * 247.07401 * 12 11 9 40 40 H 1.09005 * 109.46597 * 164.01261 * 13 12 11 41 41 H 1.09004 * 109.47137 * 284.01146 * 13 12 11 42 42 H 1.09001 * 109.47127 * 195.94131 * 14 13 12 43 43 H 1.08998 * 109.47040 * 315.93984 * 14 13 12 44 44 H 1.09006 * 109.47218 * 164.05717 * 15 14 13 45 45 H 1.09000 * 109.47805 * 44.04802 * 15 14 13 46 46 H 1.08998 * 109.46737 * 195.98053 * 16 15 14 47 47 H 1.08997 * 109.45648 * 75.99768 * 16 15 14 48 48 H 1.08999 * 109.46967 * 352.93717 * 17 16 15 49 49 H 1.08998 * 109.47538 * 232.93572 * 17 16 15 50 50 H 1.09007 * 109.47843 * 315.94737 * 18 11 9 51 51 H 1.08997 * 109.48255 * 75.95665 * 18 11 9 52 52 H 1.09008 * 109.58685 * 174.42216 * 19 6 5 53 53 H 1.08998 * 109.58709 * 294.70733 * 19 6 5 54 54 H 0.96992 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5707 -0.8442 -1.1675 6 6 3.9602 -1.6606 0.0670 7 1 5.0446 -1.7628 0.1087 8 7 3.3468 -2.9887 -0.0115 9 6 3.9028 -4.0276 0.6426 10 8 4.9109 -3.8630 1.2965 11 6 3.2714 -5.3936 0.5623 12 6 4.0943 -6.3850 1.3873 13 6 3.1786 -7.1117 2.3743 14 6 1.8894 -7.5273 1.6627 15 6 2.1659 -8.7429 0.7754 16 6 2.9079 -8.2954 -0.4855 17 6 2.2586 -7.0243 -1.0362 18 6 3.2332 -5.8528 -0.8967 19 6 3.4654 -0.9424 1.3263 20 7 2.0226 -0.6980 1.1953 21 6 1.1535 -1.1126 2.1689 22 1 0.1366 -1.3694 1.9114 23 6 1.5795 -1.2028 3.4870 24 7 2.7012 -0.6222 3.8573 25 14 0.5609 -2.1482 4.7353 26 1 0.9977 -3.5673 4.7577 27 1 0.7490 -1.5510 6.0818 28 1 -0.8738 -2.0776 4.3586 29 1 -0.3633 0.5093 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3632 -1.0278 -0.0051 32 1 1.6080 -1.7257 -1.2905 33 1 1.7689 -0.1672 -2.1365 34 1 4.0071 0.1520 -1.0965 35 1 3.9430 -1.3407 -2.0635 36 1 2.5403 -3.1202 -0.5342 37 1 2.2558 -5.3480 0.9555 38 1 4.8667 -5.8471 1.9368 39 1 4.5609 -7.1116 0.7221 40 1 3.6856 -7.9984 2.7549 41 1 2.9377 -6.4467 3.2037 42 1 1.1317 -7.7829 2.4034 43 1 1.5319 -6.7019 1.0471 44 1 1.2219 -9.2102 0.4949 45 1 2.7782 -9.4601 1.3220 46 1 2.8567 -9.0840 -1.2362 47 1 3.9508 -8.0939 -0.2409 48 1 1.3488 -6.8091 -0.4759 49 1 2.0121 -7.1686 -2.0880 50 1 2.9029 -5.0284 -1.5287 51 1 4.2297 -6.1697 -1.2042 52 1 3.6525 -1.5665 2.2003 53 1 3.9904 0.0065 1.4359 54 1 2.9987 -0.6848 4.7783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:23 Heat of formation + Delta-G solvation = -47.632538 kcal Electronic energy + Delta-G solvation = -30477.523104 eV Core-core repulsion = 26834.322109 eV Total energy + Delta-G solvation = -3643.200995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.49535 -39.94743 -38.73280 -35.77305 -34.53743 -34.03258 -33.63347 -31.98033 -31.68144 -28.05419 -27.45585 -27.34122 -26.54298 -23.92751 -23.42345 -22.57222 -21.97447 -21.07058 -20.34385 -20.12857 -18.52965 -18.13630 -17.18583 -16.60705 -16.38288 -16.00439 -15.89078 -15.61985 -15.47299 -14.99438 -14.98209 -14.72942 -14.43412 -14.40657 -14.18099 -13.98877 -13.67177 -13.51439 -13.00346 -12.90024 -12.83015 -12.63013 -12.55423 -12.42978 -12.39578 -12.23835 -12.10211 -12.06100 -11.95269 -11.83096 -11.63781 -11.56406 -11.27978 -11.19291 -11.03857 -10.85999 -10.67369 -10.56340 -10.45055 -9.85991 -8.57071 -7.81279 -5.26692 1.39501 1.41961 1.49024 1.83594 2.44520 2.50348 3.34415 3.64163 3.67111 3.75393 3.90532 4.04366 4.11388 4.15051 4.18213 4.21477 4.23625 4.29188 4.35700 4.37592 4.49367 4.51831 4.66558 4.74435 4.83199 4.84078 4.88533 4.95463 4.97300 5.02713 5.05552 5.07570 5.10465 5.12236 5.14041 5.18341 5.24774 5.27668 5.29851 5.34316 5.39609 5.43572 5.53167 5.57975 5.62443 5.63530 5.71237 5.71988 5.76427 5.82473 6.44739 6.78858 7.19178 7.49273 7.93990 8.44708 9.23725 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.005242 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.471196 B = 5340.692195 C = 6448.662045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.059 0.941 8 N -0.690 5.690 9 C 0.505 3.495 10 O -0.596 6.596 11 C -0.104 4.104 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.140 4.140 15 C -0.111 4.111 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.101 4.101 19 C 0.172 3.828 20 N -0.593 5.593 21 C -0.233 4.233 22 H 0.078 0.922 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.948 3.052 26 H -0.294 1.294 27 H -0.303 1.303 28 H -0.259 1.259 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.406 0.594 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.047 0.953 53 H -0.009 1.009 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -13.315 -15.568 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.020 3.980 7 H 0.077 0.923 8 N -0.340 5.340 9 C 0.293 3.707 10 O -0.477 6.477 11 C -0.125 4.125 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.177 4.177 15 C -0.149 4.149 16 C -0.166 4.166 17 C -0.159 4.159 18 C -0.138 4.138 19 C 0.045 3.955 20 N -0.317 5.317 21 C -0.363 4.363 22 H 0.096 0.904 23 C -0.251 4.251 24 N -0.586 5.586 25 Si 0.778 3.222 26 H -0.222 1.222 27 H -0.230 1.230 28 H -0.183 1.183 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.243 0.757 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.089 0.911 52 H 0.065 0.935 53 H 0.009 0.991 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.179 -13.152 -14.979 20.053 hybrid contribution -0.246 0.193 1.759 1.786 sum -2.424 -12.959 -13.221 18.671 Atomic orbital electron populations 1.21721 0.94588 1.01443 1.00773 1.20779 0.94226 0.93112 0.87098 0.97157 1.21945 0.94576 1.01129 0.97996 1.21650 0.97382 0.99720 0.95992 1.21427 0.96065 0.83011 0.97449 0.92317 1.45731 1.29748 1.07678 1.50890 1.21296 0.83823 0.87975 0.77600 1.90607 1.28222 1.85934 1.42975 1.21618 1.00827 0.90212 0.99821 1.21816 0.97959 0.97299 0.98313 1.21601 0.96912 0.99607 0.97295 1.22082 0.96525 0.99778 0.99309 1.21573 1.00751 0.96531 0.96012 1.21876 1.00087 0.97469 0.97123 1.21787 0.98369 0.93683 1.02015 1.21687 1.01096 0.99310 0.91745 1.20836 0.84206 0.95055 0.95408 1.44245 1.02073 1.65500 1.19859 1.19438 0.95113 1.35394 0.86395 0.90397 1.25741 0.98880 1.01465 0.99009 1.70166 1.25403 1.46848 1.16190 0.85533 0.79578 0.78239 0.78879 1.22212 1.23042 1.18345 0.94750 0.90594 0.92804 0.91649 0.89171 0.91273 0.89589 0.75700 0.88073 0.93289 0.88869 0.90793 0.95148 0.92492 0.90016 0.91240 0.91853 0.90932 0.91514 0.90827 0.90184 0.90902 0.91129 0.93487 0.99147 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.95 71.98 0.57 -3.67 16 2 C 0.15 5.73 3.49 44.98 0.16 5.89 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -3.25 5.21 30.68 0.16 -3.09 16 5 C -0.11 -3.17 5.59 30.62 0.17 -3.00 16 6 C 0.13 4.91 2.81 45.07 0.13 5.03 16 7 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 8 N -0.69 -24.04 4.68 -442.18 -2.07 -26.11 16 9 C 0.51 19.23 7.12 87.66 0.62 19.85 16 10 O -0.60 -28.50 14.80 -3.03 -0.04 -28.54 16 11 C -0.10 -2.95 2.08 -11.54 -0.02 -2.98 16 12 C -0.12 -3.34 5.07 30.59 0.16 -3.19 16 13 C -0.12 -3.09 5.71 30.59 0.17 -2.91 16 14 C -0.14 -3.02 5.33 30.60 0.16 -2.86 16 15 C -0.11 -1.81 5.71 30.60 0.17 -1.64 16 16 C -0.13 -1.94 5.48 30.59 0.17 -1.77 16 17 C -0.12 -1.89 5.48 30.60 0.17 -1.72 16 18 C -0.10 -2.01 4.92 30.60 0.15 -1.86 16 19 C 0.17 8.65 4.89 86.36 0.42 9.07 16 20 N -0.59 -28.34 2.91 -675.23 -1.96 -30.31 16 21 C -0.23 -12.34 8.60 84.03 0.72 -11.61 16 22 H 0.08 3.92 6.21 -2.91 -0.02 3.91 16 23 C -0.06 -3.24 4.96 84.86 0.42 -2.82 16 24 N -0.94 -58.79 11.14 21.65 0.24 -58.55 16 25 Si 0.95 46.64 29.58 68.60 2.03 48.67 16 26 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 27 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 28 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 29 H 0.03 1.30 7.62 -2.39 -0.02 1.28 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.76 7.44 -2.38 -0.02 1.74 16 32 H 0.06 1.71 6.40 -2.39 -0.02 1.69 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.41 11.91 6.11 -92.71 -0.57 11.34 16 37 H 0.10 2.97 5.47 -2.39 -0.01 2.95 16 38 H 0.05 1.80 6.30 -2.39 -0.02 1.79 16 39 H 0.09 2.21 4.69 -2.39 -0.01 2.20 16 40 H 0.07 1.71 7.82 -2.38 -0.02 1.69 16 41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.82 2.83 -2.39 -0.01 1.81 16 44 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.06 1.00 7.82 -2.39 -0.02 0.98 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 1.12 4.69 -2.39 -0.01 1.11 16 48 H 0.07 1.22 5.47 -2.39 -0.01 1.20 16 49 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 50 H 0.07 1.33 7.20 -2.38 -0.02 1.31 16 51 H 0.07 1.39 7.47 -2.39 -0.02 1.38 16 52 H 0.05 2.85 6.06 -2.38 -0.01 2.84 16 53 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 54 H 0.24 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -72.23 379.87 3.02 -69.21 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.33 Total: 28.90 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.51 Total: -3.27 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -3.79 Total: -114.97 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -72.23 3.02 -69.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.574 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds