Wall clock time and date at job start Tue Mar 31 2020 15:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.58787 * 2 1 4 4 C 1.53195 * 109.58407 * 239.57439 * 2 1 3 5 5 C 1.53037 * 109.31059 * 185.57945 * 4 2 1 6 6 C 1.53040 * 109.53834 * 61.36476 * 5 4 2 7 7 H 1.09003 * 109.49817 * 58.59074 * 6 5 4 8 8 N 1.46506 * 109.49847 * 178.64958 * 6 5 4 9 9 C 1.34772 * 120.00105 * 205.00287 * 8 6 5 10 10 O 1.21279 * 120.00073 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00261 * 180.02562 * 9 8 6 12 12 C 1.52992 * 109.47411 * 179.97438 * 11 9 8 13 13 C 1.54244 * 108.89702 * 297.87815 * 12 11 9 14 14 C 1.50468 * 108.52535 * 159.26301 * 13 12 11 15 15 C 1.54065 * 112.49852 * 94.15679 * 14 13 12 16 16 C 1.54072 * 112.81553 * 318.28018 * 15 14 13 17 17 C 1.50474 * 112.49363 * 318.28821 * 16 15 14 18 18 C 1.45545 * 108.89710 * 174.99914 * 12 11 9 19 19 C 1.53189 * 109.31394 * 298.63280 * 6 5 4 20 20 N 1.46923 * 109.58508 * 120.28641 * 2 1 3 21 21 C 1.36939 * 120.63046 * 353.11957 * 20 2 1 22 22 H 1.08001 * 120.00055 * 29.07670 * 21 20 2 23 23 C 1.38813 * 119.99779 * 209.07369 * 21 20 2 24 24 N 1.31618 * 120.00339 * 15.11896 * 23 21 20 25 25 Si 1.86809 * 119.99848 * 195.11671 * 23 21 20 26 26 H 1.48498 * 109.47052 * 60.00151 * 25 23 21 27 27 H 1.48502 * 109.46707 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46678 * 300.00139 * 25 23 21 29 29 H 1.09003 * 109.46996 * 299.71381 * 1 2 3 30 30 H 1.08998 * 109.47336 * 59.71354 * 1 2 3 31 31 H 1.09004 * 109.47778 * 179.71375 * 1 2 3 32 32 H 1.09004 * 109.50034 * 305.53004 * 4 2 1 33 33 H 1.09000 * 109.49979 * 65.62539 * 4 2 1 34 34 H 1.09004 * 109.45987 * 181.38618 * 5 4 2 35 35 H 1.08996 * 109.46245 * 301.34492 * 5 4 2 36 36 H 0.97001 * 119.99922 * 24.99777 * 8 6 5 37 37 H 1.09002 * 109.46781 * 300.00287 * 11 9 8 38 38 H 1.09002 * 109.46985 * 59.99131 * 11 9 8 39 39 H 1.09001 * 108.87457 * 56.39501 * 12 11 9 40 40 H 1.08996 * 109.63132 * 278.98234 * 13 12 11 41 41 H 1.09005 * 109.62313 * 39.55349 * 13 12 11 42 42 H 1.08997 * 108.88033 * 333.37573 * 14 13 12 43 43 H 1.09005 * 108.87825 * 214.93144 * 14 13 12 44 44 H 1.09002 * 108.81760 * 197.42436 * 15 14 13 45 45 H 1.08993 * 108.81708 * 79.14394 * 15 14 13 46 46 H 1.08997 * 108.87740 * 197.50851 * 16 15 14 47 47 H 1.08999 * 108.79291 * 79.00893 * 16 15 14 48 48 H 1.08992 * 109.63107 * 334.43778 * 17 16 15 49 49 H 1.09002 * 109.62442 * 213.85841 * 17 16 15 50 50 H 1.09001 * 108.89480 * 303.44180 * 18 12 11 51 51 H 1.09001 * 108.89690 * 61.93263 * 18 12 11 52 52 H 1.08997 * 109.58669 * 294.84842 * 19 6 5 53 53 H 1.09001 * 109.58706 * 174.41960 * 19 6 5 54 54 H 0.96995 * 120.00537 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5674 -0.8495 -1.1691 6 6 3.9568 -1.6657 0.0655 7 1 3.4982 -2.6529 0.0084 8 7 5.4141 -1.8060 0.1193 9 6 5.9672 -2.8482 0.7706 10 8 5.2585 -3.6697 1.3126 11 6 7.4663 -2.9922 0.8265 12 6 7.8287 -4.2490 1.6200 13 6 7.3104 -4.0945 3.0645 14 6 7.1988 -5.4624 3.6813 15 6 8.4573 -5.8539 4.4791 16 6 9.7642 -5.4559 3.7667 17 6 9.7194 -5.7283 2.2875 18 6 9.2704 -4.4414 1.5657 19 6 3.4650 -0.9454 1.3248 20 7 2.0225 -0.6981 1.1953 21 6 1.1542 -1.1055 2.1727 22 1 0.1352 -1.3576 1.9190 23 6 1.5839 -1.1944 3.4897 24 7 2.7086 -0.6169 3.8554 25 14 0.5656 -2.1337 4.7430 26 1 0.4330 -3.5487 4.3125 27 1 1.2366 -2.0791 6.0667 28 1 -0.7823 -1.5192 4.8460 29 1 -0.3633 0.5094 0.8926 30 1 -0.3634 0.5183 -0.8874 31 1 -0.3635 -1.0276 -0.0051 32 1 1.6029 -1.7269 -1.2893 33 1 1.7659 -0.1695 -2.1367 34 1 3.9377 -1.3474 -2.0653 35 1 4.0061 0.1459 -1.0995 36 1 5.9809 -1.1488 -0.3140 37 1 7.8612 -3.0748 -0.1861 38 1 7.8973 -2.1179 1.3143 39 1 7.3403 -5.1088 1.1612 40 1 8.0091 -3.4886 3.6414 41 1 6.3306 -3.6171 3.0528 42 1 7.0415 -6.1946 2.8893 43 1 6.3382 -5.4787 4.3500 44 1 8.4551 -6.9331 4.6322 45 1 8.4237 -5.3631 5.4518 46 1 10.5894 -6.0178 4.2040 47 1 9.9400 -4.3918 3.9242 48 1 9.0088 -6.5293 2.0840 49 1 10.7108 -6.0171 1.9383 50 1 9.5801 -4.4957 0.5220 51 1 9.7585 -3.5861 2.0328 52 1 3.9903 0.0037 1.4316 53 1 3.6517 -1.5692 2.1990 54 1 3.0087 -0.6788 4.7757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851072.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:44 Heat of formation + Delta-G solvation = -67.578082 kcal Electronic energy + Delta-G solvation = -29291.014144 eV Core-core repulsion = 25646.948244 eV Total energy + Delta-G solvation = -3644.065899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.25413 -39.88432 -38.89713 -35.94539 -34.65381 -34.57337 -32.91657 -32.28025 -31.72903 -29.23061 -27.62642 -26.63014 -25.65325 -24.50661 -23.92565 -22.26295 -21.39341 -21.12021 -20.70083 -20.13940 -18.34177 -17.87954 -17.33151 -16.80149 -16.55905 -16.28023 -15.78845 -15.57828 -15.37316 -15.29954 -15.07363 -14.85663 -14.51610 -14.15403 -14.01906 -13.77252 -13.72148 -13.49940 -13.20182 -13.05520 -12.98915 -12.76816 -12.71414 -12.58189 -12.45320 -12.29293 -12.12837 -11.98354 -11.69589 -11.63351 -11.46968 -11.40288 -11.37154 -11.24689 -11.19250 -11.12047 -10.95677 -10.53817 -10.48631 -9.94832 -8.62733 -7.85803 -5.31679 1.37999 1.43627 1.47499 1.83370 2.34683 2.50426 3.30372 3.64841 3.68751 3.75386 3.87159 3.98235 4.06596 4.09671 4.21322 4.23287 4.28016 4.37222 4.39992 4.45030 4.53912 4.57947 4.63950 4.70162 4.73918 4.77884 4.81983 4.88311 4.89685 4.95495 4.99813 5.06447 5.09142 5.16838 5.18420 5.23775 5.31384 5.32478 5.34188 5.37679 5.39788 5.43954 5.52640 5.54369 5.57038 5.61235 5.65091 5.68978 5.69515 5.84747 6.40732 6.76989 7.15678 7.50702 7.90250 8.38811 9.18714 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003831 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.728440 B = 7306.987122 C = 9051.517062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.045 0.955 8 N -0.714 5.714 9 C 0.498 3.502 10 O -0.581 6.581 11 C -0.130 4.130 12 C -0.060 4.060 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.110 4.110 19 C 0.182 3.818 20 N -0.604 5.604 21 C -0.252 4.252 22 H 0.074 0.926 23 C -0.051 4.051 24 N -0.932 5.932 25 Si 0.954 3.046 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.267 1.267 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.070 0.930 52 H -0.005 1.005 53 H 0.042 0.958 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.530 -4.444 -10.513 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.064 0.936 8 N -0.366 5.366 9 C 0.286 3.714 10 O -0.461 6.461 11 C -0.169 4.169 12 C -0.079 4.079 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.147 4.147 19 C 0.055 3.945 20 N -0.328 5.328 21 C -0.383 4.383 22 H 0.091 0.909 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.248 0.752 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.013 0.987 53 H 0.061 0.939 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.061 -5.002 -9.980 18.747 hybrid contribution -0.757 -0.101 1.347 1.548 sum 14.304 -5.103 -8.633 17.469 Atomic orbital electron populations 1.21739 0.94831 1.01085 1.01056 1.20803 0.94261 0.93350 0.86807 0.96113 1.21947 0.94816 1.00716 0.98264 1.21634 0.96894 0.99963 0.95973 1.21420 0.80099 0.98636 0.97347 0.93643 1.45985 1.07233 1.27550 1.55877 1.21534 0.92486 0.80455 0.76944 1.90705 1.65338 1.44084 1.45930 1.21904 0.89313 1.01272 1.04421 1.19776 0.97301 0.96406 0.94419 1.21395 1.00281 0.97165 0.96164 1.21199 0.97382 0.97210 0.99056 1.21915 0.94002 1.00878 0.98369 1.21337 0.96338 1.01730 0.95890 1.21312 1.01645 0.97418 0.94883 1.20519 0.93666 0.98559 1.01942 1.20759 0.83502 0.95095 0.95178 1.44342 1.02715 1.65838 1.19949 1.19451 0.95108 1.36951 0.86779 0.90885 1.25746 0.98977 1.01017 0.98883 1.70145 1.24859 1.46360 1.16521 0.85538 0.78875 0.78927 0.78409 1.21414 1.22294 1.19213 0.94361 0.90227 0.93640 0.93137 0.88649 0.89717 0.90930 0.75160 0.85700 0.87451 0.92800 0.91871 0.94406 0.92844 0.95191 0.91950 0.92834 0.91153 0.92102 0.92658 0.90108 0.90314 0.91127 0.98743 0.93906 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.94 71.98 0.57 -4.19 16 2 C 0.15 6.19 3.50 44.98 0.16 6.35 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.74 5.37 30.67 0.16 -3.58 16 5 C -0.11 -3.18 5.35 30.62 0.16 -3.02 16 6 C 0.13 5.18 2.60 45.07 0.12 5.30 16 7 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 8 N -0.71 -22.59 5.08 -442.16 -2.25 -24.84 16 9 C 0.50 17.02 7.29 87.66 0.64 17.66 16 10 O -0.58 -26.52 13.61 -3.03 -0.04 -26.57 16 11 C -0.13 -2.90 5.10 29.85 0.15 -2.75 16 12 C -0.06 -1.45 1.39 -12.65 -0.02 -1.47 16 13 C -0.11 -3.44 4.61 30.20 0.14 -3.31 16 14 C -0.11 -3.24 5.31 30.14 0.16 -3.08 16 15 C -0.11 -2.53 5.85 31.32 0.18 -2.35 16 16 C -0.12 -2.03 5.32 30.14 0.16 -1.87 16 17 C -0.12 -1.88 5.61 30.20 0.17 -1.71 16 18 C -0.11 -1.83 4.44 28.74 0.13 -1.71 16 19 C 0.18 9.25 4.86 86.36 0.42 9.67 16 20 N -0.60 -31.23 2.99 -675.24 -2.02 -33.25 16 21 C -0.25 -14.46 8.60 84.03 0.72 -13.73 16 22 H 0.07 4.03 6.21 -2.91 -0.02 4.01 16 23 C -0.05 -3.04 4.96 84.86 0.42 -2.62 16 24 N -0.93 -58.72 11.13 21.65 0.24 -58.48 16 25 Si 0.95 48.50 29.58 68.60 2.03 50.53 16 26 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.04 1.55 7.61 -2.39 -0.02 1.53 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.72 7.46 -2.38 -0.02 1.70 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 9.39 8.60 -92.71 -0.80 8.59 16 37 H 0.12 1.87 8.07 -2.39 -0.02 1.85 16 38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.51 7.31 -2.39 -0.02 1.50 16 40 H 0.06 1.76 6.97 -2.39 -0.02 1.74 16 41 H 0.04 1.54 5.61 -2.38 -0.01 1.53 16 42 H 0.05 1.57 6.63 -2.39 -0.02 1.55 16 43 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.08 6.63 -2.39 -0.02 1.06 16 48 H 0.05 1.04 6.98 -2.39 -0.02 1.02 16 49 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 51 H 0.07 1.08 7.47 -2.39 -0.02 1.06 16 52 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 53 H 0.04 2.63 6.06 -2.39 -0.01 2.62 16 54 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -76.53 393.24 2.47 -74.05 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.06 Total: 24.95 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.45 Total: -6.39 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -4.03 Total: -116.57 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -76.53 2.47 -74.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851072.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.475 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds