Wall clock time and date at job start Tue Mar 31 2020 15:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.58382 * 2 1 4 4 C 1.53186 * 109.58421 * 120.44130 * 2 1 3 5 5 C 1.53044 * 109.31508 * 174.43624 * 4 2 1 6 6 C 1.53040 * 109.52320 * 298.61356 * 5 4 2 7 7 H 1.08995 * 109.49625 * 181.34943 * 6 5 4 8 8 N 1.46492 * 109.50033 * 301.41915 * 6 5 4 9 9 C 1.34780 * 120.00098 * 204.99966 * 8 6 5 10 10 O 1.21280 * 120.00119 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00147 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47336 * 180.02562 * 11 9 8 13 13 C 1.54245 * 108.89266 * 297.88268 * 12 11 9 14 14 C 1.50473 * 108.52355 * 159.26373 * 13 12 11 15 15 C 1.54066 * 112.49944 * 94.15251 * 14 13 12 16 16 C 1.54073 * 112.81250 * 318.27987 * 15 14 13 17 17 C 1.50471 * 112.49579 * 318.28535 * 16 15 14 18 18 C 1.45538 * 108.89770 * 175.00164 * 12 11 9 19 19 C 1.53202 * 109.31228 * 61.37181 * 6 5 4 20 20 N 1.46925 * 109.58424 * 239.71713 * 2 1 3 21 21 C 1.36933 * 120.63226 * 6.58053 * 20 2 1 22 22 H 1.08001 * 120.00426 * 330.19496 * 21 20 2 23 23 C 1.38820 * 119.99791 * 150.19184 * 21 20 2 24 24 N 1.31615 * 119.99827 * 344.49145 * 23 21 20 25 25 Si 1.86798 * 119.99672 * 164.48939 * 23 21 20 26 26 H 1.48499 * 109.47448 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46925 * 120.00521 * 25 23 21 28 28 H 1.48507 * 109.46974 * 240.00008 * 25 23 21 29 29 H 1.09002 * 109.47061 * 180.28400 * 1 2 3 30 30 H 1.09003 * 109.47244 * 300.28832 * 1 2 3 31 31 H 1.09005 * 109.46999 * 60.28439 * 1 2 3 32 32 H 1.09000 * 109.50995 * 54.47606 * 4 2 1 33 33 H 1.09007 * 109.49015 * 294.38145 * 4 2 1 34 34 H 1.09000 * 109.46175 * 178.60087 * 5 4 2 35 35 H 1.08997 * 109.45847 * 58.62271 * 5 4 2 36 36 H 0.97004 * 119.99787 * 25.00108 * 8 6 5 37 37 H 1.09010 * 109.46911 * 300.00400 * 11 9 8 38 38 H 1.08999 * 109.46952 * 59.99491 * 11 9 8 39 39 H 1.09001 * 108.86968 * 56.39110 * 12 11 9 40 40 H 1.08997 * 109.62553 * 278.97667 * 13 12 11 41 41 H 1.08998 * 109.62491 * 39.55304 * 13 12 11 42 42 H 1.09003 * 108.87547 * 333.36912 * 14 13 12 43 43 H 1.08997 * 108.87561 * 214.92844 * 14 13 12 44 44 H 1.09002 * 108.81060 * 197.42495 * 15 14 13 45 45 H 1.09000 * 108.72696 * 79.08232 * 15 14 13 46 46 H 1.08999 * 108.87323 * 197.50547 * 16 15 14 47 47 H 1.08998 * 108.79790 * 79.01323 * 16 15 14 48 48 H 1.08990 * 109.63007 * 334.44513 * 17 16 15 49 49 H 1.09004 * 109.62477 * 213.85949 * 17 16 15 50 50 H 1.08999 * 108.89333 * 303.43860 * 18 12 11 51 51 H 1.08997 * 108.89821 * 61.92580 * 18 12 11 52 52 H 1.08999 * 109.58560 * 65.14667 * 19 6 5 53 53 H 1.08998 * 109.58327 * 185.43343 * 19 6 5 54 54 H 0.97000 * 119.99811 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7312 1.2443 5 6 3.5675 -0.8495 1.1691 6 6 3.9569 -1.6657 -0.0655 7 1 5.0411 -1.7699 -0.1056 8 7 3.3405 -2.9924 0.0110 9 6 3.8971 -4.0327 -0.6406 10 8 4.9084 -3.8705 -1.2901 11 6 3.2633 -5.3977 -0.5614 12 6 4.0872 -6.3910 -1.3832 13 6 4.0781 -5.9459 -2.8601 14 6 5.2521 -6.5784 -3.5572 15 6 4.8818 -7.9029 -4.2517 16 6 3.9510 -8.7852 -3.3980 17 6 4.3473 -8.8042 -1.9465 18 6 3.5342 -7.7251 -1.2026 19 6 3.4651 -0.9453 -1.3249 20 7 2.0225 -0.6980 -1.1954 21 6 1.1536 -1.1108 -2.1699 22 1 0.1397 -1.3781 -1.9115 23 6 1.5761 -1.1855 -3.4902 24 7 2.6867 -0.5842 -3.8607 25 14 0.5683 -2.1395 -4.7406 26 1 -0.6264 -2.7186 -4.0755 27 1 0.1359 -1.2259 -5.8285 28 1 1.3949 -3.2330 -5.3119 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 1.6031 -1.7273 1.2888 33 1 1.7658 -0.1699 2.1365 34 1 3.9378 -1.3474 2.0652 35 1 4.0060 0.1460 1.0994 36 1 2.5318 -3.1222 0.5308 37 1 3.2325 -5.7241 0.4782 38 1 2.2490 -5.3508 -0.9577 39 1 5.1147 -6.3825 -1.0197 40 1 3.1521 -6.2705 -3.3346 41 1 4.1605 -4.8605 -2.9158 42 1 6.0353 -6.7716 -2.8241 43 1 5.6348 -5.8834 -4.3044 44 1 5.7964 -8.4572 -4.4619 45 1 4.3840 -7.6763 -5.1946 46 1 3.9787 -9.8040 -3.7845 47 1 2.9329 -8.4047 -3.4807 48 1 5.4118 -8.5887 -1.8548 49 1 4.1310 -9.7840 -1.5207 50 1 3.5239 -7.9618 -0.1387 51 1 2.5097 -7.7359 -1.5746 52 1 3.9903 0.0038 -1.4316 53 1 3.6541 -1.5679 -2.1994 54 1 2.9817 -0.6361 -4.7833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851073.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:49 Heat of formation + Delta-G solvation = -64.168823 kcal Electronic energy + Delta-G solvation = -30017.643965 eV Core-core repulsion = 26373.725903 eV Total energy + Delta-G solvation = -3643.918063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.25807 -39.96370 -38.77927 -35.72112 -34.56212 -34.47255 -32.92207 -32.23361 -31.73070 -29.11998 -27.74552 -26.68338 -25.67193 -24.54477 -23.86117 -22.21957 -21.68549 -20.96506 -20.31288 -20.15818 -18.26243 -17.92213 -17.14944 -16.73789 -16.55811 -16.15849 -15.77704 -15.62442 -15.37986 -15.30661 -15.03608 -14.69519 -14.48609 -14.09863 -13.99676 -13.82513 -13.70794 -13.53960 -13.19683 -13.01366 -12.97162 -12.85091 -12.62924 -12.54666 -12.43692 -12.39696 -12.09803 -12.04468 -11.66189 -11.56779 -11.45255 -11.40419 -11.25210 -11.20398 -11.18851 -11.03642 -10.95765 -10.57388 -10.41758 -9.80187 -8.55774 -7.81518 -5.27042 1.38815 1.41989 1.50043 1.90773 2.49234 2.53090 3.34710 3.64630 3.67543 3.75181 3.88375 4.01560 4.09647 4.12560 4.19805 4.21965 4.23428 4.37186 4.44186 4.51632 4.53159 4.57464 4.67575 4.72145 4.77302 4.78304 4.84671 4.88076 4.94437 4.97930 5.05087 5.08615 5.12202 5.13176 5.15903 5.25885 5.28324 5.31209 5.33565 5.34939 5.38969 5.43786 5.55778 5.57903 5.59626 5.63527 5.67336 5.72469 5.76059 5.86266 6.45080 6.84643 7.19620 7.56378 7.94092 8.45399 9.23671 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.004642 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.362535 B = 6030.787170 C = 7280.695923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.009 0.991 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.059 0.941 8 N -0.697 5.697 9 C 0.501 3.499 10 O -0.585 6.585 11 C -0.133 4.133 12 C -0.056 4.056 13 C -0.114 4.114 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.111 4.111 19 C 0.175 3.825 20 N -0.594 5.594 21 C -0.233 4.233 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.945 3.055 26 H -0.257 1.257 27 H -0.297 1.297 28 H -0.303 1.303 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.406 0.594 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.031 0.969 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.063 0.937 52 H -0.012 1.012 53 H 0.045 0.955 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -14.136 12.109 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.077 0.923 8 N -0.348 5.348 9 C 0.289 3.711 10 O -0.466 6.466 11 C -0.173 4.173 12 C -0.075 4.075 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.148 4.148 19 C 0.048 3.952 20 N -0.317 5.317 21 C -0.363 4.363 22 H 0.095 0.905 23 C -0.248 4.248 24 N -0.585 5.585 25 Si 0.775 3.225 26 H -0.180 1.180 27 H -0.225 1.225 28 H -0.231 1.231 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.081 0.919 52 H 0.006 0.994 53 H 0.064 0.936 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.292 -13.990 11.526 18.129 hybrid contribution -0.331 0.443 -1.599 1.692 sum -0.039 -13.547 9.927 16.795 Atomic orbital electron populations 1.21721 0.94615 1.01433 1.00730 1.20777 0.94227 0.93057 0.87172 0.97282 1.21938 0.94619 1.01147 0.97893 1.21647 0.97347 0.99675 0.96106 1.21372 0.96039 0.83160 0.97202 0.92297 1.45816 1.29687 1.07827 1.51434 1.21282 0.84172 0.87747 0.77852 1.90637 1.27655 1.86117 1.42198 1.21884 1.00756 0.90576 1.04044 1.19745 0.99366 0.94641 0.93766 1.21394 0.98111 0.99571 0.96043 1.21187 0.97999 0.96385 0.99030 1.21922 1.00025 0.94970 0.98283 1.21345 0.98993 0.99400 0.95702 1.21296 1.00052 0.98908 0.94726 1.20530 0.99672 0.92921 1.01695 1.20803 0.84154 0.94883 0.95400 1.44253 1.02174 1.65516 1.19790 1.19436 0.95343 1.35315 0.86231 0.90525 1.25728 0.98883 1.01247 0.98972 1.70179 1.26088 1.46207 1.16002 0.85511 0.78871 0.78188 0.79894 1.18027 1.22473 1.23081 0.92787 0.90656 0.94776 0.91518 0.89325 0.89654 0.91457 0.75751 0.85922 0.88751 0.92085 0.93014 0.94388 0.92203 0.94981 0.91413 0.93276 0.91009 0.92762 0.92152 0.90035 0.90183 0.91856 0.99376 0.93649 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.95 71.98 0.57 -3.68 16 2 C 0.15 5.75 3.50 44.98 0.16 5.91 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.12 -3.24 5.20 30.67 0.16 -3.08 16 5 C -0.11 -3.18 5.59 30.62 0.17 -3.01 16 6 C 0.13 4.92 2.81 45.07 0.13 5.05 16 7 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 8 N -0.70 -23.65 4.91 -442.17 -2.17 -25.82 16 9 C 0.50 18.16 7.29 87.66 0.64 18.80 16 10 O -0.59 -26.48 13.61 -3.03 -0.04 -26.52 16 11 C -0.13 -3.48 5.11 29.85 0.15 -3.33 16 12 C -0.06 -1.49 1.39 -12.65 -0.02 -1.51 16 13 C -0.11 -3.81 4.61 30.20 0.14 -3.67 16 14 C -0.11 -3.27 5.31 30.14 0.16 -3.11 16 15 C -0.11 -2.70 5.85 31.32 0.18 -2.52 16 16 C -0.12 -2.29 5.32 30.14 0.16 -2.13 16 17 C -0.11 -2.00 5.61 30.20 0.17 -1.83 16 18 C -0.11 -2.14 4.44 28.73 0.13 -2.01 16 19 C 0.17 8.72 4.88 86.37 0.42 9.15 16 20 N -0.59 -28.33 2.90 -675.21 -1.96 -30.29 16 21 C -0.23 -12.30 8.57 84.04 0.72 -11.58 16 22 H 0.08 3.86 6.24 -2.91 -0.02 3.85 16 23 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 24 N -0.94 -58.54 11.23 21.65 0.24 -58.30 16 25 Si 0.95 46.49 29.58 68.60 2.03 48.52 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 28 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 29 H 0.05 1.77 7.44 -2.39 -0.02 1.75 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.30 7.63 -2.38 -0.02 1.28 16 32 H 0.07 1.74 6.40 -2.39 -0.02 1.72 16 33 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 11.53 6.77 -92.70 -0.63 10.90 16 37 H 0.12 2.26 8.07 -2.38 -0.02 2.24 16 38 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.06 1.76 7.31 -2.39 -0.02 1.74 16 40 H 0.05 1.70 6.97 -2.39 -0.02 1.68 16 41 H 0.04 1.66 5.61 -2.39 -0.01 1.65 16 42 H 0.06 1.74 6.63 -2.39 -0.02 1.73 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.15 6.63 -2.39 -0.02 1.13 16 48 H 0.06 1.16 6.97 -2.39 -0.02 1.14 16 49 H 0.08 1.11 8.14 -2.38 -0.02 1.10 16 50 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 51 H 0.06 1.22 7.47 -2.39 -0.02 1.20 16 52 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 53 H 0.05 2.72 6.15 -2.39 -0.01 2.71 16 54 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -71.89 389.88 2.79 -69.09 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.23 Total: 28.53 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 4.46 Total: -5.22 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.89 Total: -114.41 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -71.89 2.79 -69.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851073.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.922 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds