Wall clock time and date at job start Tue Mar 31 2020 15:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.59030 * 2 1 4 4 C 1.53195 * 109.58497 * 120.42555 * 2 1 3 5 5 C 1.53045 * 109.31426 * 174.42341 * 4 2 1 6 6 C 1.53045 * 109.53657 * 298.63733 * 5 4 2 7 7 H 1.09005 * 109.49249 * 301.41182 * 6 5 4 8 8 N 1.46493 * 109.49719 * 181.34917 * 6 5 4 9 9 C 1.34777 * 120.00241 * 154.99755 * 8 6 5 10 10 O 1.21285 * 119.99731 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00104 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.54246 * 108.89794 * 296.39794 * 12 11 9 14 14 C 1.50554 * 108.48476 * 159.17833 * 13 12 11 15 15 C 1.54066 * 112.41314 * 94.26699 * 14 13 12 16 16 C 1.54066 * 112.82142 * 318.27872 * 15 14 13 17 17 C 1.50474 * 112.48963 * 318.28767 * 16 15 14 18 18 C 1.45540 * 108.89652 * 173.60743 * 12 11 9 19 19 C 1.53186 * 109.31485 * 61.36295 * 6 5 4 20 20 N 1.46920 * 109.59159 * 239.71432 * 2 1 3 21 21 C 1.36941 * 120.62601 * 6.32990 * 20 2 1 22 22 H 1.07997 * 120.00415 * 330.18137 * 21 20 2 23 23 C 1.38815 * 119.99857 * 150.18013 * 21 20 2 24 24 N 1.31621 * 119.99984 * 344.61683 * 23 21 20 25 25 Si 1.86800 * 120.00122 * 164.61362 * 23 21 20 26 26 H 1.48503 * 109.47174 * 60.00002 * 25 23 21 27 27 H 1.48497 * 109.47073 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47370 * 300.00248 * 25 23 21 29 29 H 1.09000 * 109.46859 * 180.28205 * 1 2 3 30 30 H 1.09000 * 109.47051 * 300.28778 * 1 2 3 31 31 H 1.09003 * 109.46687 * 60.28301 * 1 2 3 32 32 H 1.09003 * 109.49927 * 294.37606 * 4 2 1 33 33 H 1.09003 * 109.49871 * 54.47351 * 4 2 1 34 34 H 1.08996 * 109.46142 * 58.65396 * 5 4 2 35 35 H 1.09001 * 109.45914 * 178.62945 * 5 4 2 36 36 H 0.96999 * 119.99741 * 334.99936 * 8 6 5 37 37 H 1.08997 * 109.47008 * 300.00124 * 11 9 8 38 38 H 1.09001 * 109.46814 * 60.00520 * 11 9 8 39 39 H 1.09003 * 108.87796 * 54.99906 * 12 11 9 40 40 H 1.09001 * 109.62773 * 278.97598 * 13 12 11 41 41 H 1.09002 * 109.62656 * 39.55146 * 13 12 11 42 42 H 1.08995 * 108.92259 * 333.51108 * 14 13 12 43 43 H 1.09006 * 108.83385 * 214.95967 * 14 13 12 44 44 H 1.09003 * 108.81168 * 197.41545 * 15 14 13 45 45 H 1.09001 * 108.81166 * 79.14106 * 15 14 13 46 46 H 1.08987 * 108.88020 * 197.51241 * 16 15 14 47 47 H 1.08998 * 108.87391 * 79.05662 * 16 15 14 48 48 H 1.09001 * 109.63069 * 334.44082 * 17 16 15 49 49 H 1.09007 * 109.62778 * 213.85931 * 17 16 15 50 50 H 1.08996 * 108.89479 * 303.43958 * 18 12 11 51 51 H 1.09002 * 108.89693 * 62.03093 * 18 12 11 52 52 H 1.08997 * 109.58880 * 185.57718 * 19 6 5 53 53 H 1.09001 * 109.58981 * 65.14779 * 19 6 5 54 54 H 0.97002 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1692 6 6 3.9570 -1.6656 -0.0655 7 1 3.4983 -2.6529 -0.0084 8 7 5.4142 -1.8059 -0.1192 9 6 5.9674 -2.8481 -0.7706 10 8 5.2587 -3.6696 -1.3127 11 6 7.4665 -2.9920 -0.8263 12 6 7.8289 -4.2488 -1.6199 13 6 7.2905 -5.4851 -0.8710 14 6 7.1806 -6.6249 -1.8485 15 6 8.4311 -7.5248 -1.8446 16 6 9.7443 -6.7227 -1.7693 17 6 9.7233 -5.5003 -2.6465 18 6 9.2729 -4.2947 -1.7963 19 6 3.4652 -0.9454 -1.3248 20 7 2.0226 -0.6980 -1.1952 21 6 1.1531 -1.1154 -2.1674 22 1 0.1408 -1.3861 -1.9065 23 6 1.5731 -1.1903 -3.4884 24 7 2.6819 -0.5875 -3.8617 25 14 0.5644 -2.1469 -4.7362 26 1 -0.7974 -1.5613 -4.8254 27 1 1.2223 -2.0732 -6.0655 28 1 0.4660 -3.5660 -4.3100 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5095 -0.8926 32 1 1.7659 -0.1695 2.1367 33 1 1.6029 -1.7269 1.2892 34 1 4.0062 0.1459 1.0996 35 1 3.9377 -1.3476 2.0653 36 1 5.9809 -1.1486 0.3141 37 1 7.8975 -2.1177 -1.3141 38 1 7.8614 -3.0748 0.1863 39 1 7.3550 -4.1959 -2.6001 40 1 7.9766 -5.7542 -0.0679 41 1 6.3070 -5.2628 -0.4570 42 1 7.0413 -6.2190 -2.8505 43 1 6.3109 -7.2285 -1.5889 44 1 8.4364 -8.1232 -2.7557 45 1 8.3790 -8.1952 -0.9867 46 1 10.5683 -7.3652 -2.0794 47 1 9.9099 -6.4134 -0.7373 48 1 9.0229 -5.6511 -3.4680 49 1 10.7222 -5.3164 -3.0423 50 1 9.5981 -3.3766 -2.2856 51 1 9.7464 -4.3589 -0.8166 52 1 3.6519 -1.5690 -2.1990 53 1 3.9903 0.0038 -1.4316 54 1 2.9752 -0.6396 -4.7849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851075.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:53 Heat of formation + Delta-G solvation = -68.782659 kcal Electronic energy + Delta-G solvation = -29138.799198 eV Core-core repulsion = 25494.681064 eV Total energy + Delta-G solvation = -3644.118133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.24926 -39.88649 -38.89962 -35.94594 -34.64787 -34.56969 -32.91622 -32.27545 -31.74389 -29.22548 -27.62843 -26.62623 -25.63874 -24.51606 -23.92751 -22.25924 -21.41686 -21.11173 -20.70966 -20.12377 -18.33447 -17.89179 -17.34496 -16.72475 -16.51605 -16.41669 -15.83320 -15.49095 -15.37142 -15.25923 -15.04840 -14.97452 -14.48171 -14.13984 -14.00878 -13.80473 -13.70148 -13.39461 -13.34714 -13.03281 -12.97732 -12.77252 -12.70189 -12.58181 -12.46425 -12.30544 -12.13316 -11.99404 -11.66494 -11.62924 -11.44266 -11.40351 -11.38787 -11.23860 -11.17700 -11.13194 -10.96310 -10.54862 -10.53369 -9.94010 -8.61601 -7.86658 -5.32988 1.38081 1.43742 1.47692 1.82700 2.34056 2.50231 3.29833 3.64205 3.68783 3.76045 3.86655 3.97929 4.07705 4.09817 4.22201 4.24255 4.27938 4.37030 4.40171 4.45788 4.54557 4.57494 4.64245 4.69597 4.72119 4.78901 4.81729 4.88512 4.89713 4.96521 5.00012 5.06497 5.10012 5.17918 5.18418 5.22124 5.31486 5.33360 5.34524 5.37728 5.39755 5.41880 5.52731 5.54111 5.58130 5.60413 5.64921 5.68243 5.69415 5.83274 6.40694 6.76409 7.15430 7.49975 7.89699 8.38927 9.18285 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.003499 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.546753 B = 8001.009577 C = 9231.796732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.132 3.868 7 H 0.045 0.955 8 N -0.714 5.714 9 C 0.498 3.502 10 O -0.582 6.582 11 C -0.129 4.129 12 C -0.066 4.066 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.109 4.109 19 C 0.182 3.818 20 N -0.604 5.604 21 C -0.253 4.253 22 H 0.072 0.928 23 C -0.051 4.051 24 N -0.933 5.933 25 Si 0.954 3.046 26 H -0.267 1.267 27 H -0.296 1.296 28 H -0.287 1.287 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.412 0.588 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.081 0.919 52 H 0.038 0.962 53 H -0.004 1.004 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.492 -5.531 12.343 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.064 0.936 8 N -0.366 5.366 9 C 0.286 3.714 10 O -0.462 6.462 11 C -0.168 4.168 12 C -0.085 4.085 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.146 4.146 19 C 0.055 3.945 20 N -0.328 5.328 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.192 1.192 27 H -0.222 1.222 28 H -0.214 1.214 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.100 0.900 52 H 0.057 0.943 53 H 0.014 0.986 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.024 -6.084 11.808 20.054 hybrid contribution -0.707 -0.122 -1.417 1.588 sum 14.317 -6.206 10.391 18.747 Atomic orbital electron populations 1.21735 0.94832 1.01072 1.01040 1.20806 0.94258 0.93377 0.86758 0.96058 1.21954 0.94820 1.00713 0.98284 1.21634 0.96889 0.99973 0.95946 1.21419 0.80083 0.98644 0.97329 0.93623 1.45981 1.07241 1.27519 1.55876 1.21530 0.92465 0.80379 0.77003 1.90710 1.65333 1.43800 1.46323 1.21893 0.89335 1.00843 1.04773 1.19813 0.97120 0.93583 0.97962 1.21364 1.00651 0.94159 0.98045 1.21248 0.97778 0.97157 0.99026 1.21909 0.93810 0.97609 1.01740 1.21322 0.96523 0.96660 1.00639 1.21330 1.01251 0.94899 0.98122 1.20514 0.93819 0.98938 1.01367 1.20737 0.83635 0.95057 0.95048 1.44312 1.02586 1.65663 1.20246 1.19426 0.95649 1.36563 0.86701 0.90999 1.25777 0.99095 1.00803 0.98918 1.70153 1.25955 1.45553 1.16227 0.85531 0.78894 0.78923 0.78347 1.19179 1.22247 1.21421 0.93654 0.90228 0.94382 0.88642 0.93152 0.90893 0.89703 0.75133 0.87370 0.85773 0.94433 0.90414 0.93580 0.94287 0.94070 0.92636 0.91697 0.91323 0.91201 0.93513 0.90517 0.91546 0.90020 0.94308 0.98593 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.95 71.98 0.57 -4.18 16 2 C 0.15 6.20 3.50 44.98 0.16 6.36 16 3 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.12 -3.74 5.37 30.67 0.16 -3.58 16 5 C -0.11 -3.16 5.35 30.62 0.16 -3.00 16 6 C 0.13 5.18 2.60 45.07 0.12 5.30 16 7 H 0.05 2.12 7.58 -2.38 -0.02 2.10 16 8 N -0.71 -22.52 5.08 -442.17 -2.25 -24.76 16 9 C 0.50 17.03 7.29 87.66 0.64 17.67 16 10 O -0.58 -26.61 13.71 -3.04 -0.04 -26.65 16 11 C -0.13 -2.90 5.10 29.85 0.15 -2.75 16 12 C -0.07 -1.61 1.39 -12.65 -0.02 -1.63 16 13 C -0.10 -2.70 4.62 30.22 0.14 -2.56 16 14 C -0.11 -3.00 5.32 30.16 0.16 -2.84 16 15 C -0.11 -2.18 5.85 31.32 0.18 -2.00 16 16 C -0.11 -1.79 5.31 30.14 0.16 -1.63 16 17 C -0.12 -2.06 5.61 30.20 0.17 -1.89 16 18 C -0.11 -1.91 4.44 28.74 0.13 -1.78 16 19 C 0.18 9.28 4.87 86.36 0.42 9.70 16 20 N -0.60 -31.21 2.98 -675.23 -2.02 -33.23 16 21 C -0.25 -14.49 8.56 84.03 0.72 -13.77 16 22 H 0.07 3.97 6.24 -2.91 -0.02 3.96 16 23 C -0.05 -3.02 4.94 84.86 0.42 -2.60 16 24 N -0.93 -58.82 11.24 21.65 0.24 -58.58 16 25 Si 0.95 48.48 29.58 68.60 2.03 50.51 16 26 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 H 0.04 1.71 7.43 -2.39 -0.02 1.69 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.55 7.64 -2.39 -0.02 1.53 16 32 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 9.35 8.60 -92.71 -0.80 8.55 16 37 H 0.11 2.07 8.05 -2.39 -0.02 2.05 16 38 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.21 7.26 -2.39 -0.02 1.19 16 40 H 0.08 1.60 6.97 -2.39 -0.02 1.58 16 41 H 0.05 1.51 5.76 -2.39 -0.01 1.49 16 42 H 0.04 1.17 6.63 -2.39 -0.02 1.15 16 43 H 0.04 1.15 8.14 -2.38 -0.02 1.14 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.98 6.62 -2.39 -0.02 0.97 16 48 H 0.05 1.00 6.98 -2.39 -0.02 0.99 16 49 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 51 H 0.08 1.10 7.46 -2.39 -0.02 1.08 16 52 H 0.04 2.38 6.15 -2.39 -0.01 2.37 16 53 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 54 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.66 393.54 2.48 -74.18 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.06 Total: 23.70 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.45 Total: -5.18 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -4.02 Total: -116.57 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.04 Total: -26.65 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -76.66 2.48 -74.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851075.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.396 kcal (2) G-P(sol) polarization free energy of solvation -76.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds