Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.58698 * 2 1 4 4 C 1.53192 * 109.70177 * 239.64569 * 2 1 3 5 5 C 1.53107 * 109.33143 * 185.50918 * 4 2 1 6 6 C 1.53040 * 109.50514 * 61.34088 * 5 4 2 7 7 H 1.08999 * 109.49955 * 178.68262 * 6 5 4 8 8 N 1.46505 * 109.49616 * 58.61797 * 6 5 4 9 9 C 1.34782 * 119.99507 * 155.06214 * 8 6 5 10 10 O 1.21277 * 119.99994 * 0.02562 * 9 8 6 11 11 C 1.50707 * 119.99521 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46633 * 180.02562 * 11 9 8 13 13 C 1.54240 * 108.89015 * 184.99976 * 12 11 9 14 14 C 1.50478 * 108.68237 * 159.16191 * 13 12 11 15 15 C 1.54260 * 112.38798 * 93.93095 * 14 13 12 16 16 C 1.54059 * 112.95139 * 318.58276 * 15 14 13 17 17 C 1.50480 * 112.49941 * 318.16912 * 16 15 14 18 18 C 1.45548 * 108.89562 * 62.11761 * 12 11 9 19 19 C 1.53191 * 109.33900 * 298.65496 * 6 5 4 20 20 N 1.46925 * 108.77837 * 54.64727 * 19 6 5 21 21 C 1.36943 * 120.63006 * 126.41122 * 20 19 6 22 22 H 1.08005 * 119.99995 * 221.22098 * 21 20 19 23 23 C 1.38807 * 120.00029 * 41.22395 * 21 20 19 24 24 N 1.31616 * 120.00008 * 214.83042 * 23 21 20 25 25 Si 1.86802 * 120.00075 * 34.82760 * 23 21 20 26 26 H 1.48502 * 109.46880 * 84.62964 * 25 23 21 27 27 H 1.48498 * 109.47276 * 204.62942 * 25 23 21 28 28 H 1.48502 * 109.47099 * 324.63048 * 25 23 21 29 29 H 1.08996 * 109.46781 * 299.71284 * 1 2 3 30 30 H 1.08999 * 109.47007 * 59.71477 * 1 2 3 31 31 H 1.08999 * 109.47194 * 179.71765 * 1 2 3 32 32 H 1.09005 * 109.49883 * 305.45663 * 4 2 1 33 33 H 1.08991 * 109.49951 * 65.52135 * 4 2 1 34 34 H 1.08996 * 109.44780 * 301.35019 * 5 4 2 35 35 H 1.08997 * 109.50323 * 181.36794 * 5 4 2 36 36 H 0.97000 * 120.00554 * 335.07055 * 8 6 5 37 37 H 1.09004 * 109.46918 * 60.00487 * 11 9 8 38 38 H 1.08999 * 109.46928 * 300.00183 * 11 9 8 39 39 H 1.08998 * 108.79426 * 303.55618 * 12 11 9 40 40 H 1.09003 * 109.63008 * 278.96683 * 13 12 11 41 41 H 1.08997 * 109.63106 * 39.35493 * 13 12 11 42 42 H 1.08995 * 108.88035 * 215.02913 * 14 13 12 43 43 H 1.09009 * 108.87362 * 333.47251 * 14 13 12 44 44 H 1.08998 * 108.83243 * 197.61830 * 15 14 13 45 45 H 1.09004 * 108.65248 * 79.42396 * 15 14 13 46 46 H 1.08999 * 108.87690 * 197.39161 * 16 15 14 47 47 H 1.08996 * 108.88163 * 78.94805 * 16 15 14 48 48 H 1.09001 * 109.62356 * 334.44188 * 17 16 15 49 49 H 1.08992 * 109.62752 * 213.86420 * 17 16 15 50 50 H 1.09009 * 108.89068 * 303.44034 * 18 12 11 51 51 H 1.08997 * 108.89716 * 62.02717 * 18 12 11 52 52 H 1.09003 * 109.59025 * 174.43791 * 19 6 5 53 53 H 1.08997 * 109.58836 * 294.72368 * 19 6 5 54 54 H 0.97001 * 119.99657 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5712 -0.8447 -1.1678 6 6 3.9602 -1.6608 0.0669 7 1 5.0446 -1.7631 0.1087 8 7 3.3465 -2.9888 -0.0115 9 6 3.9034 -4.0281 0.6415 10 8 4.9122 -3.8638 1.2943 11 6 3.2724 -5.3943 0.5604 12 6 4.0954 -6.3858 1.3852 13 6 3.5127 -7.8008 1.1920 14 6 4.5688 -8.8104 1.5522 15 6 4.4629 -9.2733 3.0199 16 6 4.1590 -8.1187 3.9935 17 6 4.9451 -6.8755 3.6758 18 6 4.0814 -5.9656 2.7787 19 6 3.4655 -0.9426 1.3263 20 7 2.0226 -0.6980 1.1953 21 6 1.1535 -1.1126 2.1690 22 1 0.2068 -1.5546 1.8953 23 6 1.4892 -0.9647 3.5077 24 7 1.1084 -1.8686 4.3854 25 14 2.4814 0.5171 4.0637 26 1 1.5674 1.6624 4.3053 27 1 3.2035 0.1868 5.3186 28 1 3.4619 0.8802 3.0092 29 1 -0.3633 0.5094 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 -1.0276 -0.0051 32 1 1.6080 -1.7257 -1.2906 33 1 1.7683 -0.1676 -2.1365 34 1 4.0078 0.1516 -1.0969 35 1 3.9440 -1.3413 -2.0636 36 1 2.5395 -3.1202 -0.5334 37 1 3.2451 -5.7207 -0.4793 38 1 2.2570 -5.3495 0.9540 39 1 5.1236 -6.3751 1.0236 40 1 2.6455 -7.9313 1.8395 41 1 3.2166 -7.9360 0.1518 42 1 4.4689 -9.6748 0.8959 43 1 5.5511 -8.3638 1.3970 44 1 5.4042 -9.7397 3.3105 45 1 3.6677 -10.0150 3.0950 46 1 4.4005 -8.4392 5.0070 47 1 3.0954 -7.8858 3.9435 48 1 5.8607 -7.1458 3.1497 49 1 5.1912 -6.3519 4.5995 50 1 4.4589 -4.9451 2.8433 51 1 3.0543 -5.9853 3.1430 52 1 3.6525 -1.5666 2.2003 53 1 3.9904 0.0064 1.4359 54 1 1.3433 -1.7654 5.3209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851076.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -61.178457 kcal Electronic energy + Delta-G solvation = -29852.369151 eV Core-core repulsion = 26208.580761 eV Total energy + Delta-G solvation = -3643.788391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.33039 -40.01122 -38.81911 -35.77385 -34.48257 -34.43999 -32.93890 -32.50366 -32.24243 -29.12915 -27.82151 -26.53598 -25.57202 -24.59680 -24.02639 -22.22814 -21.74333 -20.94762 -20.46884 -20.10883 -18.35341 -18.05852 -17.09563 -16.85445 -16.52629 -16.31074 -16.00228 -15.53556 -15.43346 -15.28636 -15.06206 -14.70887 -14.52753 -14.31783 -14.15100 -13.97916 -13.75546 -13.59328 -13.42198 -13.04427 -12.96134 -12.91935 -12.72261 -12.59280 -12.51016 -12.40180 -12.14240 -11.81139 -11.67478 -11.58449 -11.55630 -11.34620 -11.31000 -11.21146 -11.16721 -11.12704 -11.06879 -10.49171 -10.35203 -9.82743 -8.54003 -8.24734 -5.46849 1.31370 1.38222 1.44363 1.85227 2.46126 2.49420 2.96375 3.45048 3.69057 3.74419 3.93142 3.99411 4.06539 4.12972 4.16448 4.21952 4.26170 4.38291 4.41151 4.45441 4.52828 4.56344 4.62840 4.66701 4.73695 4.77074 4.80885 4.84489 4.91153 4.97294 5.02080 5.04468 5.10923 5.13135 5.13965 5.16602 5.22509 5.26447 5.30946 5.34678 5.39585 5.43517 5.47436 5.56886 5.59710 5.62822 5.66136 5.68573 5.81608 5.96268 6.29609 6.78784 7.05999 7.50337 7.71243 8.21818 8.94730 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.004208 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.404210 B = 6652.021029 C = 7733.978813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.029 0.971 4 C -0.119 4.119 5 C -0.109 4.109 6 C 0.132 3.868 7 H 0.071 0.929 8 N -0.698 5.698 9 C 0.505 3.495 10 O -0.585 6.585 11 C -0.133 4.133 12 C -0.055 4.055 13 C -0.107 4.107 14 C -0.116 4.116 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.123 4.123 19 C 0.137 3.863 20 N -0.598 5.598 21 C -0.239 4.239 22 H 0.052 0.948 23 C 0.000 4.000 24 N -0.923 5.923 25 Si 0.885 3.115 26 H -0.290 1.290 27 H -0.313 1.313 28 H -0.250 1.250 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.406 0.594 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.048 0.952 51 H 0.035 0.965 52 H 0.023 0.977 53 H 0.024 0.976 54 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -10.166 -14.074 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.046 0.954 4 C -0.158 4.158 5 C -0.147 4.147 6 C 0.025 3.975 7 H 0.089 0.911 8 N -0.349 5.349 9 C 0.293 3.707 10 O -0.466 6.466 11 C -0.173 4.173 12 C -0.074 4.074 13 C -0.144 4.144 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.161 4.161 19 C 0.011 3.989 20 N -0.323 5.323 21 C -0.369 4.369 22 H 0.070 0.930 23 C -0.198 4.198 24 N -0.566 5.566 25 Si 0.714 3.286 26 H -0.218 1.218 27 H -0.241 1.241 28 H -0.174 1.174 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.243 0.757 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.054 0.946 52 H 0.042 0.958 53 H 0.042 0.958 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.332 -10.079 -13.482 17.657 hybrid contribution -0.047 1.192 1.491 1.910 sum 5.285 -8.887 -11.991 15.833 Atomic orbital electron populations 1.21687 0.94887 1.01117 1.00708 1.20901 0.94100 0.93637 0.86663 0.95350 1.21948 0.94865 1.01077 0.97934 1.21674 0.97008 1.00074 0.95959 1.21332 0.96641 0.82934 0.96615 0.91111 1.45856 1.29888 1.07873 1.51288 1.21238 0.83930 0.87788 0.77710 1.90579 1.27817 1.86109 1.42109 1.21875 1.00619 0.90758 1.04037 1.19766 0.99030 0.94395 0.94232 1.21382 0.98525 0.92278 1.02212 1.21341 0.98910 0.99004 0.96103 1.21917 1.01923 0.96892 0.94236 1.21335 0.99756 0.95083 0.99315 1.21196 0.98825 0.95954 0.98526 1.20681 0.98882 1.00245 0.96276 1.21531 0.85098 0.95945 0.96361 1.44418 1.01651 1.65932 1.20344 1.18406 1.01352 1.32356 0.84767 0.93013 1.26017 0.98526 0.98642 0.96653 1.70159 1.50263 1.32995 1.03174 0.86659 0.79749 0.84747 0.77461 1.21751 1.24076 1.17401 0.94783 0.90459 0.93713 0.92025 0.88986 0.90404 0.89409 0.75736 0.85921 0.89443 0.91791 0.92118 0.89904 0.90500 0.92686 0.91746 0.91500 0.92180 0.93082 0.91447 0.93851 0.93304 0.94587 0.95787 0.95802 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.08 71.98 0.58 -3.62 16 2 C 0.15 5.23 3.49 44.98 0.16 5.38 16 3 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.12 -3.01 5.21 30.69 0.16 -2.85 16 5 C -0.11 -2.72 5.59 30.64 0.17 -2.55 16 6 C 0.13 4.47 2.81 45.07 0.13 4.59 16 7 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 8 N -0.70 -22.69 4.92 -442.14 -2.17 -24.86 16 9 C 0.50 17.94 7.45 87.66 0.65 18.59 16 10 O -0.58 -25.35 13.37 -3.02 -0.04 -25.39 16 11 C -0.13 -3.64 5.08 29.85 0.15 -3.48 16 12 C -0.06 -1.51 1.45 -12.65 -0.02 -1.53 16 13 C -0.11 -2.18 4.97 30.20 0.15 -2.03 16 14 C -0.12 -2.12 5.34 30.21 0.16 -1.96 16 15 C -0.11 -2.11 5.85 31.38 0.18 -1.93 16 16 C -0.12 -2.83 5.31 30.14 0.16 -2.67 16 17 C -0.11 -3.13 5.61 30.20 0.17 -2.96 16 18 C -0.12 -4.22 4.29 28.74 0.12 -4.10 16 19 C 0.14 6.03 4.19 86.36 0.36 6.39 16 20 N -0.60 -26.54 2.38 -675.23 -1.61 -28.15 16 21 C -0.24 -12.87 8.42 84.03 0.71 -12.16 16 22 H 0.05 3.00 6.83 -2.91 -0.02 2.99 16 23 C 0.00 0.01 4.82 84.86 0.41 0.42 16 24 N -0.92 -57.95 13.97 21.65 0.30 -57.65 16 25 Si 0.89 46.56 27.40 68.60 1.88 48.44 16 26 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 27 H -0.31 -17.11 7.11 99.48 0.71 -16.40 16 28 H -0.25 -12.43 5.24 99.48 0.52 -11.91 16 29 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.56 7.42 -2.39 -0.02 1.54 16 32 H 0.06 1.55 6.40 -2.38 -0.02 1.53 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 11.39 6.77 -92.71 -0.63 10.76 16 37 H 0.12 2.37 8.02 -2.38 -0.02 2.35 16 38 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.06 1.84 7.32 -2.39 -0.02 1.83 16 40 H 0.06 1.34 6.98 -2.39 -0.02 1.32 16 41 H 0.08 1.35 7.89 -2.39 -0.02 1.33 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.08 6.65 -2.38 -0.02 1.07 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.34 6.63 -2.39 -0.02 1.32 16 48 H 0.07 1.84 6.99 -2.39 -0.02 1.82 16 49 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.05 2.11 5.32 -2.38 -0.01 2.10 16 51 H 0.04 1.33 7.46 -2.39 -0.02 1.31 16 52 H 0.02 1.27 7.02 -2.39 -0.02 1.25 16 53 H 0.02 1.07 6.70 -2.39 -0.02 1.05 16 54 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.72 386.99 2.82 -67.90 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.05 Total: 26.18 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.41 Total: -6.47 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.48 Total: -110.66 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -70.72 2.82 -67.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851076.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.721 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds