Wall clock time and date at job start Tue Mar 31 2020 15:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.58567 * 2 1 4 4 C 1.53190 * 109.58511 * 120.43037 * 2 1 3 5 5 C 1.53109 * 109.32818 * 174.42171 * 4 2 1 6 6 C 1.53045 * 109.50262 * 298.65905 * 5 4 2 7 7 H 1.09000 * 109.49579 * 181.32076 * 6 5 4 8 8 N 1.46502 * 109.49603 * 301.38019 * 6 5 4 9 9 C 1.34781 * 119.99896 * 204.93601 * 8 6 5 10 10 O 1.21279 * 119.99834 * 359.97438 * 9 8 6 11 11 C 1.50699 * 119.99736 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.46698 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46897 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47254 * 60.00139 * 13 12 11 15 15 C 1.52999 * 109.47272 * 59.99750 * 14 13 12 16 16 C 1.53002 * 109.47254 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47056 * 299.99764 * 14 13 12 18 18 C 1.52995 * 109.47296 * 60.00197 * 11 9 8 19 19 C 1.53186 * 109.33933 * 61.34716 * 6 5 4 20 20 N 1.46924 * 109.58357 * 239.72157 * 2 1 3 21 21 C 1.36934 * 120.63709 * 6.58304 * 20 2 1 22 22 H 1.08007 * 119.99386 * 330.16805 * 21 20 2 23 23 C 1.38804 * 120.00327 * 150.16503 * 21 20 2 24 24 N 1.31618 * 120.00094 * 344.54828 * 23 21 20 25 25 Si 1.86807 * 119.99922 * 164.55156 * 23 21 20 26 26 H 1.48499 * 109.47382 * 59.99713 * 25 23 21 27 27 H 1.48504 * 109.46984 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46792 * 299.99362 * 25 23 21 29 29 H 1.08994 * 109.47233 * 180.27759 * 1 2 3 30 30 H 1.08999 * 109.46664 * 300.28526 * 1 2 3 31 31 H 1.09004 * 109.46585 * 60.27558 * 1 2 3 32 32 H 1.08997 * 109.50027 * 294.37448 * 4 2 1 33 33 H 1.09006 * 109.49401 * 54.44096 * 4 2 1 34 34 H 1.09000 * 109.50295 * 178.63651 * 5 4 2 35 35 H 1.08996 * 109.44981 * 58.65075 * 5 4 2 36 36 H 0.96998 * 120.00168 * 24.94024 * 8 6 5 37 37 H 1.08995 * 109.47296 * 299.99294 * 11 9 8 38 38 H 1.09004 * 109.47331 * 59.99976 * 12 11 9 39 39 H 1.09004 * 109.47303 * 299.99691 * 12 11 9 40 40 H 1.09003 * 109.47199 * 180.02562 * 13 12 11 41 41 H 1.09004 * 109.46834 * 299.99907 * 13 12 11 42 42 H 1.09003 * 109.46647 * 60.00134 * 15 14 13 43 43 H 1.09001 * 109.47029 * 179.97438 * 15 14 13 44 44 H 1.08997 * 109.47263 * 300.00062 * 15 14 13 45 45 H 1.09004 * 109.46834 * 59.99768 * 16 14 13 46 46 H 1.08995 * 109.47049 * 179.97438 * 16 14 13 47 47 H 1.08994 * 109.46978 * 300.00043 * 16 14 13 48 48 H 1.09004 * 109.47331 * 180.02562 * 17 14 13 49 49 H 1.09004 * 109.47303 * 300.00397 * 17 14 13 50 50 H 1.09004 * 109.47389 * 59.99890 * 18 11 9 51 51 H 1.09003 * 109.47175 * 299.99989 * 18 11 9 52 52 H 1.09004 * 109.58682 * 65.14145 * 19 6 5 53 53 H 1.09005 * 109.58495 * 185.41867 * 19 6 5 54 54 H 0.96999 * 120.00055 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5682 -0.8498 1.1694 6 6 3.9569 -1.6656 -0.0658 7 1 5.0412 -1.7700 -0.1063 8 7 3.3405 -2.9924 0.0108 9 6 3.8960 -4.0322 -0.6426 10 8 4.9058 -3.8694 -1.2942 11 6 3.2615 -5.3969 -0.5643 12 6 4.0835 -6.3895 -1.3890 13 6 3.4391 -7.7749 -1.3101 14 6 2.0149 -7.7073 -1.8649 15 6 2.0570 -7.2467 -3.3233 16 6 1.3702 -9.0926 -1.7853 17 6 1.1929 -6.7148 -1.0401 18 6 1.8374 -5.3299 -1.1193 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6979 -1.1954 21 6 1.1537 -1.1106 -2.1701 22 1 0.1398 -1.3783 -1.9115 23 6 1.5760 -1.1847 -3.4903 24 7 2.6869 -0.5839 -3.8606 25 14 0.5674 -2.1372 -4.7414 26 1 -0.7928 -1.5484 -4.8323 27 1 1.2281 -2.0632 -6.0693 28 1 0.4651 -3.5566 -4.3173 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3632 0.5183 0.8874 31 1 -0.3633 0.5096 -0.8925 32 1 1.7660 -0.1697 2.1366 33 1 1.6025 -1.7268 1.2893 34 1 3.9389 -1.3481 2.0651 35 1 4.0068 0.1456 1.0999 36 1 2.5326 -3.1226 0.5316 37 1 3.2316 -5.7246 0.4748 38 1 5.0984 -6.4373 -0.9941 39 1 4.1131 -6.0616 -2.4282 40 1 4.0249 -8.4821 -1.8973 41 1 3.4092 -8.1030 -0.2710 42 1 2.6426 -7.9539 -3.9108 43 1 1.0423 -7.1990 -3.7186 44 1 2.5160 -6.2597 -3.3795 45 1 1.3402 -9.4202 -0.7461 46 1 0.3555 -9.0443 -2.1802 47 1 1.9557 -9.8000 -2.3726 48 1 0.1780 -6.6669 -1.4351 49 1 1.1629 -7.0428 -0.0011 50 1 1.8674 -5.0023 -2.1585 51 1 1.2515 -4.6227 -0.5321 52 1 3.9904 0.0039 -1.4318 53 1 3.6541 -1.5678 -2.1995 54 1 2.9818 -0.6354 -4.7833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072104827.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:37 Heat of formation + Delta-G solvation = -68.325947 kcal Electronic energy + Delta-G solvation = -30566.392232 eV Core-core repulsion = 26922.293903 eV Total energy + Delta-G solvation = -3644.098329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.45838 -40.05499 -38.86261 -35.74499 -34.53964 -34.27296 -32.15664 -31.73702 -31.51160 -28.22478 -28.15598 -27.52312 -26.60260 -23.93060 -23.57623 -23.37736 -22.06509 -21.15345 -20.33340 -19.31150 -18.32161 -18.09887 -17.09798 -16.66994 -16.14902 -15.84592 -15.79296 -15.71235 -15.40853 -15.05692 -14.85501 -14.68893 -14.51106 -14.20372 -13.93071 -13.85908 -13.47225 -13.38076 -13.16303 -12.96135 -12.86137 -12.81664 -12.60290 -12.57772 -12.53702 -12.42626 -12.29735 -12.13639 -12.07894 -11.86648 -11.85122 -11.57340 -11.34048 -11.20624 -11.09957 -11.03927 -10.84296 -10.56576 -10.44287 -9.86488 -8.55442 -7.81369 -5.26426 1.38474 1.42258 1.46413 1.81606 2.46346 2.50527 3.34993 3.64387 3.66982 3.70773 3.77664 4.02979 4.07643 4.11677 4.16268 4.19230 4.24604 4.42608 4.45734 4.51172 4.55457 4.62050 4.66171 4.69991 4.74932 4.83052 4.83938 4.93306 4.96788 4.97518 5.04692 5.06725 5.08778 5.12021 5.13152 5.15751 5.17354 5.21387 5.28080 5.31009 5.33494 5.39181 5.51412 5.54261 5.58139 5.62665 5.65190 5.71934 5.75261 5.81144 6.45050 6.78621 7.19770 7.48881 7.94403 8.45785 9.23915 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.005422 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.125791 B = 5163.154134 C = 6223.419620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.010 0.990 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.059 0.941 8 N -0.691 5.691 9 C 0.506 3.494 10 O -0.598 6.598 11 C -0.091 4.091 12 C -0.098 4.098 13 C -0.096 4.096 14 C -0.066 4.066 15 C -0.149 4.149 16 C -0.134 4.134 17 C -0.099 4.099 18 C -0.106 4.106 19 C 0.175 3.825 20 N -0.592 5.592 21 C -0.230 4.230 22 H 0.076 0.924 23 C -0.052 4.052 24 N -0.938 5.938 25 Si 0.942 3.058 26 H -0.271 1.271 27 H -0.308 1.308 28 H -0.277 1.277 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.406 0.594 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.090 0.910 50 H 0.032 0.968 51 H 0.070 0.930 52 H -0.010 1.010 53 H 0.043 0.957 54 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -13.751 13.803 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.020 3.980 7 H 0.077 0.923 8 N -0.341 5.341 9 C 0.293 3.707 10 O -0.479 6.479 11 C -0.112 4.112 12 C -0.136 4.136 13 C -0.134 4.134 14 C -0.066 4.066 15 C -0.206 4.206 16 C -0.191 4.191 17 C -0.136 4.136 18 C -0.144 4.144 19 C 0.048 3.952 20 N -0.316 5.316 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.247 4.247 24 N -0.586 5.586 25 Si 0.772 3.228 26 H -0.197 1.197 27 H -0.235 1.235 28 H -0.203 1.203 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.243 0.757 37 H 0.143 0.857 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.051 0.949 51 H 0.089 0.911 52 H 0.008 0.992 53 H 0.062 0.938 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.042 -13.593 13.208 19.196 hybrid contribution -0.220 0.400 -1.757 1.816 sum -3.262 -13.193 11.451 17.771 Atomic orbital electron populations 1.21719 0.94606 1.01444 1.00721 1.20772 0.94214 0.93075 0.87100 0.97203 1.21953 0.94557 1.01121 0.97996 1.21662 0.97401 0.99712 0.95972 1.21430 0.96050 0.83075 0.97459 0.92331 1.45767 1.29600 1.07762 1.50989 1.21331 0.83761 0.87839 0.77728 1.90635 1.28142 1.86218 1.42953 1.21305 0.96060 0.90497 1.03318 1.21332 0.98340 0.95014 0.98958 1.21567 0.94616 0.94862 1.02334 1.20578 0.95632 0.96200 0.94183 1.22002 1.01177 1.00395 0.97022 1.21795 1.00226 0.94401 1.02658 1.21572 0.98253 0.92411 1.01352 1.21464 0.93617 0.99085 1.00211 1.20786 0.84299 0.94895 0.95230 1.44214 1.02059 1.65493 1.19784 1.19321 0.95285 1.35284 0.86144 0.90610 1.25696 0.98839 1.01229 0.98954 1.70161 1.26098 1.46254 1.16056 0.85700 0.78728 0.79741 0.78620 1.19695 1.23470 1.20284 0.92763 0.90648 0.94806 0.89217 0.91629 0.89604 0.91283 0.75679 0.85741 0.92186 0.94384 0.91251 0.89598 0.92250 0.93173 0.94911 0.91092 0.92696 0.92361 0.91746 0.89156 0.94948 0.91149 0.99195 0.93813 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.95 71.98 0.57 -3.66 16 2 C 0.15 5.75 3.50 44.98 0.16 5.91 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.25 5.21 30.69 0.16 -3.09 16 5 C -0.11 -3.18 5.59 30.65 0.17 -3.01 16 6 C 0.13 4.88 2.81 45.07 0.13 5.01 16 7 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 8 N -0.69 -24.03 4.81 -442.16 -2.13 -26.16 16 9 C 0.51 19.16 7.12 87.66 0.62 19.79 16 10 O -0.60 -28.59 15.65 -3.03 -0.05 -28.64 16 11 C -0.09 -2.55 2.53 -11.54 -0.03 -2.58 16 12 C -0.10 -2.79 4.22 30.60 0.13 -2.66 16 13 C -0.10 -1.95 4.73 30.59 0.14 -1.80 16 14 C -0.07 -1.36 0.77 -52.18 -0.04 -1.40 16 15 C -0.15 -3.91 7.78 71.98 0.56 -3.35 16 16 C -0.13 -2.07 8.47 71.98 0.61 -1.46 16 17 C -0.10 -2.07 4.73 30.58 0.14 -1.93 16 18 C -0.11 -3.01 4.82 30.58 0.15 -2.87 16 19 C 0.18 8.79 4.88 86.36 0.42 9.21 16 20 N -0.59 -28.19 2.90 -675.23 -1.96 -30.15 16 21 C -0.23 -12.12 8.57 84.03 0.72 -11.40 16 22 H 0.08 3.81 6.24 -2.91 -0.02 3.79 16 23 C -0.05 -3.01 4.94 84.86 0.42 -2.59 16 24 N -0.94 -58.83 11.23 21.65 0.24 -58.59 16 25 Si 0.94 46.68 29.58 68.60 2.03 48.71 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 27 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 28 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 29 H 0.05 1.76 7.44 -2.39 -0.02 1.75 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.28 7.63 -2.38 -0.02 1.27 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.71 6.40 -2.38 -0.02 1.70 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 36 H 0.41 11.88 6.19 -92.71 -0.57 11.30 16 37 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.06 1.73 8.10 -2.38 -0.02 1.71 16 39 H 0.04 1.34 6.38 -2.39 -0.02 1.32 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.03 1.08 4.81 -2.39 -0.01 1.07 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.03 1.21 6.43 -2.39 -0.02 1.19 16 51 H 0.07 1.95 7.56 -2.39 -0.02 1.93 16 52 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 53 H 0.04 2.65 6.15 -2.38 -0.01 2.64 16 54 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -72.82 393.60 3.46 -69.36 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.28 Total: 27.35 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.04 Total: -1.88 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -3.84 Total: -114.89 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -72.82 3.46 -69.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072104827.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.034 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds